rna5306, rna5306 (mRNA) Nannochloropsis gaditana

Overview
Namerna5306
Unique Namerna5306
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length912
Alignment locationCM002465.1:672798..673448 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g100.6736.mrna
Orig protein idgnl|cribi|Naga_100005g100.6736
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:672798..673448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g100gene5126Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5306rna5306-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25442.1cds5293Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5306 ID=rna5306|Name=rna5306|organism=Nannochloropsis gaditana|type=mRNA|length=912bp
ATGGAGTCTTGCAAAGTGGTTACACCCCCTCCTACAATGAAGACCTCCCT
TGTTACCCTGGCGCTGGCCACAGTCCCCGCCACTGCCTTCATGGGCGGCT
TCATGGGCAAGAACTTCGCCGCCCCCGCTAAGGTAGCCTCCACCACCACC
ACCACCATGTTCCTGAACTTCGGCTCCAAGAAGGCAGCGCCCGCCCCCAA
GACCGCGCCCAAGACCGCCCCTGCCAAGAAGGGCGGGGTCTCTATCCCCA
AACCCGCGGGCAAAGTTGCCGCCAAGCCTGCGGCCAAGCCCGCTTCCAAG
CCGGTGTCCAAAGTGGCGCCCAAGAAAGCTGCCCCCGCGCCTAAGAAAGC
TGCCCCCGCGCCCAAGAAAGCCGCCCCGACAAGGGCCGCAGCCAAGCCGG
CCGCCCCCCTATCCAACCCTGATTTCGCCGGCGGCTTGATCGGCTCGGAT
GTGGAGGCGATCCGATTCGATCCCTGGAACCTGGCCAGTGAGCGAGACCC
CGAAGGCCTCGCATGGTACCGATCCGCCGAGCTCAAGCACGGCCGCATCT
GCATGCTCGCCGCCCTGGGTCTCCTCGTGCAGTCCTCCTACCACCTCCCC
GACGAGGTCTTCAGCAACTCCAAGGGCCTCGACGCGCTCTTCCAGGTCTC
AGCGGAGCGGCCTCAGGCCATCGCCCAGATCCTCATCGCCATCGGCGCCA
TCGAGGTTGCGGGGCTGGCAGCCAGCGAGGGCAAGGCCCCCGGGGACTTC
GGCTTCGACCCCCTGAACCTGAAGCCCAAGACGGAGGAGGCTTTCAACGA
GCTGCAGCTGAAGGAGATCAAGAACGGACGGTTGGCGATGGTGGGAGTGG
CGGGGATGCTCATTCAGGAGACCCTGACCAACCAGGGCGTGCTCGAGCAG
ATCAACAGGTGA
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protein sequence of rna5306

>rna5306-protein ID=rna5306-protein|Name=rna5306|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MEASCLGGEWSLEPFQRRPGRVLGCHAADRYPSESEVDVKENDNKYEERG
FKEARGWWGPGPHATASMEGHRTSPARATGPGGGRRDPSRIVLAGRERGG
RGCSTRGFGPEVAPSVFRPVARRALPSVACCGVGALQAGWVNGGAWRAGV
ERKREKELTCDI
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mRNA from alignment at CM002465.1:672798..673448+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5306 ID=rna5306|Name=rna5306|organism=Nannochloropsis gaditana|type=mRNA|length=651bp|location=Sequence derived from alignment at CM002465.1:672798..673448+ (Nannochloropsis gaditana)
ATGGAGGCATCCTGTCTCGGGGGAGAAGTCAGACGGCGTAAAGAGAGAGG
GCCTCGGAGCTCGCAGATATTCGATTATCGTTCAACTGTACTGACGCTCC
CCGATCTcgattccctccctgtccttacAGTGGTCACTTGAGCCCTTTCA
ACGACGGCCAGGGCGTGTTCTAGGCTGTCATGCCGCCGACAGATATCCTT
CAGAAAGTGAAGTAGATGTGAAGGAGAATGACAATAAGTACGAAGAGCGA
GGGTTTAAGGAAGCTCGAGGTTGGTGGGGCCCTGGTCCGCACGCCACTGC
CTCTATGGAGGGCCACCGCACGTCGCCAGCAAGGGCAACaggaccgggag
gaggacggagagaccCCTCCCGAATCGTATTagcagggagagagaggggt
tgAGCAGGGCGCATGGCGTGAGGGGGGTTCCGAGGGAAGTTGAGTGGGGG
CagacaggggggagggggtgttCCACTAGAGGCTTCGGGCCTGAGGTGGC
GCCGAGCGTTTTCAGACCAGTAGCTCGCAGGGCTCTGCCCTCAGTGGCGT
GCTGCGGAGTCGGTGCTTTGCAAGCTGGTTGGGTGAACGGGGGTGCCTGG
AGGGCCGGAGTGGAgcggaaaagagaaaaggaactGACATGTGACATTTG
A
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Coding sequence (CDS) from alignment at CM002465.1:672798..673448+

>rna5306 ID=rna5306|Name=rna5306|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002465.1:672798..673448+ (Nannochloropsis gaditana)
ATGGAGGCATCCTGTCTCGGGGGAGAATGGTCACTTGAGCCCTTTCAACG
ACGGCCAGGGCGTGTTCTAGGCTGTCATGCCGCCGACAGATATCCTTCAG
AAAGTGAAGTAGATGTGAAGGAGAATGACAATAAGTACGAAGAGCGAGGG
TTTAAGGAAGCTCGAGGTTGGTGGGGCCCTGGTCCGCACGCCACTGCCTC
TATGGAGGGCCACCGCACGTCGCCAGCAAGGGCAACaggaccgggaggag
gacggagagaccCCTCCCGAATCGTATTagcagggagagagagggggggg
agggggtgttCCACTAGAGGCTTCGGGCCTGAGGTGGCGCCGAGCGTTTT
CAGACCAGTAGCTCGCAGGGCTCTGCCCTCAGTGGCGTGCTGCGGAGTCG
GTGCTTTGCAAGCTGGTTGGGTGAACGGGGGTGCCTGGAGGGCCGGAGTG
GAgcggaaaagagaaaaggaactGACATGTGACATTTGAATGGAGGCATC
CTGTCTCGGGGGAGAATGGTCACTTGAGCCCTTTCAACGACGGCCAGGGC
GTGTTCTAGGCTGTCATGCCGCCGACAGATATCCTTCAGAAAGTGAAGTA
GATGTGAAGGAGAATGACAATAAGTACGAAGAGCGAGGGTTTAAGGAAGC
TCGAGGTTGGTGGGGCCCTGGTCCGCACGCCACTGCCTCTATGGAGGGCC
ACCGCACGTCGCCAGCAAGGGCAACaggaccgggaggaggacggagagac
cCCTCCCGAATCGTATTagcagggagagagaggggggggagggggtgttC
CACTAGAGGCTTCGGGCCTGAGGTGGCGCCGAGCGTTTTCAGACCAGTAG
CTCGCAGGGCTCTGCCCTCAGTGGCGTGCTGCGGAGTCGGTGCTTTGCAA
GCTGGTTGGGTGAACGGGGGTGCCTGGAGGGCCGGAGTGGAgcggaaaag
agaaaaggaactGACATGTGACATTTGAATGGAGGCATCCTGTCTCGGGG
GAGAATGGTCACTTGAGCCCTTTCAACGACGGCCAGGGCGTGTTCTAGGC
TGTCATGCCGCCGACAGATATCCTTCAGAAAGTGAAGTAGATGTGAAGGA
GAATGACAATAAGTACGAAGAGCGAGGGTTTAAGGAAGCTCGAGGTTGGT
GGGGCCCTGGTCCGCACGCCACTGCCTCTATGGAGGGCCACCGCACGTCG
CCAGCAAGGGCAACaggaccgggaggaggacggagagaccCCTCCCGAAT
CGTATTagcagggagagagaggggggggagggggtgttCCACTAGAGGCT
TCGGGCCTGAGGTGGCGCCGAGCGTTTTCAGACCAGTAGCTCGCAGGGCT
CTGCCCTCAGTGGCGTGCTGCGGAGTCGGTGCTTTGCAAGCTGGTTGGGT
GAACGGGGGTGCCTGGAGGGCCGGAGTGGAgcggaaaagagaaaaggaac
tGACATGTGACATTTGA
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Synonyms
Publications