rna5305, rna5305 (mRNA) Nannochloropsis gaditana

Overview
Namerna5305
Unique Namerna5305
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1487
Alignment locationCM002465.1:671715..672746 +

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Properties
Property NameValue
Productlight-harvesting protein
Orig transcript idgnl|cribi|Naga_100005g99.6653.mrna
Orig protein idgnl|cribi|Naga_100005g99.6653
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:671715..672746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g99gene5125Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5305rna5305-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25359.1cds5292Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5305 ID=rna5305|Name=rna5305|organism=Nannochloropsis gaditana|type=mRNA|length=1487bp
TCCAGTCCTCATCGATCGTGCAGAAGCGTCGAAAACAGTTTACACACTTG
CCTCAGGACCCAACAAGTAAGAGGCGGGGAGCTCGAGGTTCACCATCGTC
GCACGACCCGGTGACCCCAACAGCATGGGCCTGCCGGGCCACGAAGAGCT
AATAAATGCAGTGAAGTTCACGCCGAACGGCCGATTAATTGCCTCTGCCA
GTGATGATCGGACTGTAAGTAGCAACGTTGAGGCAGTGCATATGAAGGCA
AATGAAGTAAGGTACTAGCATCTTTTAAGGACATAATCTTTTCTAGTGCT
CAAATGCACGCAATTTACGTATGATCAAGCGTCAGATGAGCAAGTTACTC
GGAGTACGAACTGTTCAAAGCAAGCAACAAGACATAGCTGACGTTTAAGG
GGAGCGGATCTTGCACGACACCAGGCTGACCTTACTGTGTCCCCATATAT
GACAATAATCACCCATTGGGGTCCTTGTAATTTTTTTTCTCTCTTATTAG
GTGCGCATATGGAATGCGAACACAGGATCCTGCGTACGTGTCCTTAGTGG
CCACACCTCAATGGTGCGAAGCGTGGGGGTGATGCCGGACGGCAACCGCA
TCATCTCGGGAGGCACCGATGGGACGCTGAGGCTATGGGACATCGAGACT
GGTCAAAATCTAGCGGTTGTGGGTGGTCATCTGGGCCACGTATTGTCCCT
TGTAGCTTTGCCCGACGGGCGCAGCGTCGTATCTGGAGATTTCGACAGGC
AAGTCAAGGTGTGGGACCTATCTGCCTCCACTTCGTTCGTCGCAAAGGTC
GGTGCGAGCATGCACCCGGCCGAAATCCGCGCCATGGCAATATTTCCAGG
CACCGGACGGATAGCTGTGGGGTACATGGGCAACGAGGAGTGCACGGAGA
TTCGCGTTTGGGACGTGGCGCAGGGAGGCATCCCGGCGGGAGAAGGAGCG
AAGCCTACTGAGGTCCCCCCGCTCTGGAGCGTCCCAGGTCACGATGACAC
GGTGGTTAGTCTGGGCGTGCTGGGCGAGAACGGATTGGTGTCCTCCGGCT
TTGATCGCACGGTCCGCGTATGGAGTCAGTTGTCATGCATCGAGGCATCT
GACAAAGAGGCTAGTCTCGTCATAGACTCGGGCGAGAACATTGCCATGGC
GGTGATGGCTTGGGAGGACGGTCGCGGTCTTGCGTACGGTTGTGACGACG
GGAGCTTGCACGTGTGGGACTTGAAGCGTCGCCGCGAGGCGTTGAGCCAT
CCTCACAGGCACCCTGATGGTGTGAAAGCCCTGGACATCTCCAAGGACGG
CAGCTTACTTTGCTCGGCAGGTGCTGACCATGCCCTTAGATTGCTTCGTA
TGGACAGTGCAAGCGGCGTGGCTCCTTGAAAGTGTGTGCTGTTGCCCGAC
ACTATTAATTCCTGGGGTTGGGGGGTAATTAGGCCGAGGAAACAGGAGCG
TAGGACTGCTTGTAAAAAAACTAAACTCTTTGCCAGA
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protein sequence of rna5305

>rna5305-protein ID=rna5305-protein|Name=rna5305|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MESCKVVTPPPTMKTSLVTLALATVPATAFMGGFMGKNFAAPAKVASTTT
TTMFLNFGSKKAAPAPKTAPKTAPAKKGGVSIPKPAGKVAAKPAAKPASK
PVSKVAPKKAAPAPKKAAPAPKKAAPTRAAAKPAAPLSNPDFAGGLIGSD
VEAIRFDPWNLASERDPEGLAWYRSAELKHGRICMLAALGLLVQSSYHLP
DEVFSNSKGLDALFQVSAERPQAIAQILIAIGAIEVAGLAASEGKAPGDF
GFDPLNLKPKTEEAFNELQLKEIKNGRLAMVGVAGMLIQETLTNQGVLEQ
INR
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mRNA from alignment at CM002465.1:671715..672746+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5305 ID=rna5305|Name=rna5305|organism=Nannochloropsis gaditana|type=mRNA|length=1032bp|location=Sequence derived from alignment at CM002465.1:671715..672746+ (Nannochloropsis gaditana)
ATGGAGTCTTGCAAAGTGGTGTAGGCACTGAAACGGTTTACTCGgggact
tcctcccctgaTCTTCTCGTGGTACTTGtactcttccccttgtcttccct
tctcacTGAAATTCATATTGTCCATCACATTCTTCCATAGTACACCCCCT
CCTACAATGAAGACCTCCCTTGTTACCCTGGCGCTGGCCACAGTCCCCGC
CACTGCCTTCATGGGCGGCTTCATGGGCAAGAACTTCGCCGCCCCCGCTA
AGGtagcctccaccaccaccaccaccatgtTCCTGAACTTCGGCTCCAAG
AAGGCAGCGCCCGCCCCCAAGACCGCGCCCAAGACCGCCCCTgccaagaa
gggcggggtcTCTATCCCCAAACCCGCGGGCAAAGTTGCCGCCAAGCCTG
CGGCCAAGCCCGCTTCCAAGCCGGTGTCCAAAGTGGCGCCCAAGAAAGCT
GCCCCCGCGCCTAAGAAAGCTGCCCCCGCGCCCAAGAAAGCCGCCCCGAC
AAGGGCCGCAGCCAAGCCGGCCGCCCCCCTATCCAACCCTGATTTCGCCG
GCGGCTTGATCGGCTCGGATGTGGAGGCGATCCGATTCGATCCCTGGAAC
CTGGCCAGTGAGCGAGACCCCGAAGGCCTCGCATGGTACCGATCCGCCGA
GCTCAAGCACGGCCGCATCTGCATGCTCGCCGCCCTGGGTCTCCTCGTGC
AGTCCTCCTACCACCTCCCCGACGAGGTCTTCAGCAACTCCAAGGGCCTC
GACGCGCTCTTCCAGGTCTCAGCGGAGCGGCCTCAGGCCATCGCCCAGAT
CCTCATCGCCATCGGCGCCATCGAGGTTGCGGGGCTGGCAGCCAGCGAGG
GCAAGGCCCCCGGGGACTTCGGCTTCGACCCCCTGAACCTGAAGcccaag
acggaggaggctttcAACGAGCTGCAGCTGAAGGAGATCAAGAACGGACG
GTTGGCGatggtgggagtggcggggATGCTCATTCAGGAGACCCTGACCA
ACCAGGGCGTGCTCGAGCAGATCAACAGGTGA
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Coding sequence (CDS) from alignment at CM002465.1:671715..672746+

>rna5305 ID=rna5305|Name=rna5305|organism=Nannochloropsis gaditana|type=CDS|length=1824bp|location=Sequence derived from alignment at CM002465.1:671715..672746+ (Nannochloropsis gaditana)
ATGGAGTCTTGCAAAGTGGTTACACCCCCTCCTACAATGAAGACCTCCCT
TGTTACCCTGGCGCTGGCCACAGTCCCCGCCACTGCCTTCATGGGCGGCT
TCATGGGCAAGAACTTCGCCGCCCCCGCTAAGGtagcctccaccaccacc
accaccatgtTCCTGAACTTCGGCTCCAAGAAGGCAGCGCCCGCCCCCAA
GACCGCGCCCAAGACCGCCCCTgccaagaagggcggggtcTCTATCCCCA
AACCCGCGGGCAAAGTTGCCGCCAAGCCTGCGGCCAAGCCCGCTTCCAAG
CCGGTGTCCAAAGTGGCGCCCAAGAAAGCTGCCCCCGCGCCTAAGAAAGC
TGCCCCCGCGCCCAAGAAAGCCGCCCCGACAAGGGCCGCAGCCAAGCCGG
CCGCCCCCCTATCCAACCCTGATTTCGCCGGCGGCTTGATCGGCTCGGAT
GTGGAGGCGATCCGATTCGATCCCTGGAACCTGGCCAGTGAGCGAGACCC
CGAAGGCCTCGCATGGTACCGATCCGCCGAGCTCAAGCACGGCCGCATCT
GCATGCTCGCCGCCCTGGGTCTCCTCGTGCAGTCCTCCTACCACCTCCCC
GACGAGGTCTTCAGCAACTCCAAGGGCCTCGACGCGCTCTTCCAGGTCTC
AGCGGAGCGGCCTCAGGCCATCGCCCAGATCCTCATCGCCATCGGCGCCA
TCGAGGTTGCGGGGCTGGCAGCCAGCGAGGGCAAGGCCCCCGGGGACTTC
GGCTTCGACCCCCTGAACCTGAAGcccaagacggaggaggctttcAACGA
GCTGCAGCTGAAGGAGATCAAGAACGGACGGTTGGCGatggtgggagtgg
cggggATGCTCATTCAGGAGACCCTGACCAACCAGGGCGTGCTCGAGCAG
ATCAACAGGTGAATGGAGTCTTGCAAAGTGGTTACACCCCCTCCTACAAT
GAAGACCTCCCTTGTTACCCTGGCGCTGGCCACAGTCCCCGCCACTGCCT
TCATGGGCGGCTTCATGGGCAAGAACTTCGCCGCCCCCGCTAAGGtagcc
tccaccaccaccaccaccatgtTCCTGAACTTCGGCTCCAAGAAGGCAGC
GCCCGCCCCCAAGACCGCGCCCAAGACCGCCCCTgccaagaagggcgggg
tcTCTATCCCCAAACCCGCGGGCAAAGTTGCCGCCAAGCCTGCGGCCAAG
CCCGCTTCCAAGCCGGTGTCCAAAGTGGCGCCCAAGAAAGCTGCCCCCGC
GCCTAAGAAAGCTGCCCCCGCGCCCAAGAAAGCCGCCCCGACAAGGGCCG
CAGCCAAGCCGGCCGCCCCCCTATCCAACCCTGATTTCGCCGGCGGCTTG
ATCGGCTCGGATGTGGAGGCGATCCGATTCGATCCCTGGAACCTGGCCAG
TGAGCGAGACCCCGAAGGCCTCGCATGGTACCGATCCGCCGAGCTCAAGC
ACGGCCGCATCTGCATGCTCGCCGCCCTGGGTCTCCTCGTGCAGTCCTCC
TACCACCTCCCCGACGAGGTCTTCAGCAACTCCAAGGGCCTCGACGCGCT
CTTCCAGGTCTCAGCGGAGCGGCCTCAGGCCATCGCCCAGATCCTCATCG
CCATCGGCGCCATCGAGGTTGCGGGGCTGGCAGCCAGCGAGGGCAAGGCC
CCCGGGGACTTCGGCTTCGACCCCCTGAACCTGAAGcccaagacggagga
ggctttcAACGAGCTGCAGCTGAAGGAGATCAAGAACGGACGGTTGGCGa
tggtgggagtggcggggATGCTCATTCAGGAGACCCTGACCAACCAGGGC
GTGCTCGAGCAGATCAACAGGTGA
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Synonyms
Publications