rna5300, rna5300 (mRNA) Nannochloropsis gaditana

Overview
Namerna5300
Unique Namerna5300
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2427
Alignment locationCM002465.1:656430..658711 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g93.6661.mrna
Orig protein idgnl|cribi|Naga_100005g93.6661
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:656430..658711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g93gene5120Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5300rna5300-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25367.1cds5287Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5300 ID=rna5300|Name=rna5300|organism=Nannochloropsis gaditana|type=mRNA|length=2427bp
ACGCGCGTCCTAGCCCGTACATTTCCCTCCTGTCGTCATGATACATTATG
CACGGCTTAGTTGAGGTACCAAGGAAAGCGCATGCTCGCCTTCTCGTGCA
CTTCTAGAAATAGGCCGGTTTACAATCACGCGACGTGCTTCAAGTCCCTC
GTTAGTGACGAGGCGGGCGCTTGCACTGCTCAATAAGGACAAGGCCGTGC
TTGTCTCCCGTAGATTCCTTTTATTATCACGACAAACACATAGAATGGAC
ACTTCACAGCACAGGACGCCTTTGGGCATGGAGGCGGCCGATAAAAATGC
ACCGTCCTCCTAAGTCGATGCGCCCACCCGCTGCATTCCTCCTCCCCGTC
CTCCTCCACGCCTGTTTGAACATTCCCCATGTCACTGCCGATGACATTAT
CACGATCCGGGTTCCGACCATGGGTTTGGAAATACAAGGGCTTTCAAGCA
AATGCGGTTCTGATCAATTTTGGGGCATTCCATACGCCCAAAGGCCCGTC
GAGCGCTGGAAGCGGGGGCAACCCTCGTGGGCGGAGCCCTCCACGATGCC
TGAAGGCTTCGCACAATTTGACGCAAGCGGGCACATGCCGCAGGAGCGCT
GCCCTCAGCTATGCGATGGCGTTGTAGTGGGCTCGGAGGACTGTCTCCTG
CTGAACGTCTTTCGGCCTGCCTCTCCGGGGAGCCCGATGCCCGTGATGGT
CTTTATCCACGGCGGCTCCTTTACTGAAGGAGGCATCGACTCCCCTCTCT
TAGATGGCAGCTCCCTCGCGGCGGAAGAGGGCATCGTGATTGTCACTATC
AATTACCGATTGGGGGCCCTCGGGTTCCTGACAGACCCGACCTTGCCTGG
GAATGGCAACTTGGGCATGCTCGACCAGCAGCTGGCCCTAGAGTGGGTCC
GCGACAACATCGGTTTCTTCGGGGGGGACGCAGAGGCTGTCACATTGGCG
GGGCAGTCAGCAGGAGCCTTTAGTGCCTGCTTGCACATGCTGGCCCCCAA
GAGCCGCGCCATGCTGCAGGCCCTGGTGATGGAGAGCGGAGCGTGCGTGG
CCTTGCCCTTGCAGGAGGCGAGGACCCGGACAGAGACCTTCGCGGCTGGC
CTGGGGTGCCGGCCGGGTCCCGGTAGGCGCAGCCCCAGCAACGGCTCGAG
CGAGGGTGCGGATGACGGCGGGCTGGTCGCCTGCCTGACCCGTCTCTCCC
TGGAGGTCCTGATCCCCGAGTCCTCCGAGAGGGGCCGGGAGATGTACCAC
TACTGGGCGCCCGCCCTCGACGGCGACCTTTTCCTCCCTGCCTCGCCCGC
AACGCTACTCGACCCCTCCGTCACGCCCCCCCTTGCACCCGCGTCACCGC
TAAACGTCCTCCTGGGCTGCAACCGCGACGAGGGCAGTGTCTTCGTCGCC
TCCACAGGGCTGGGGGGCGCCGGCGGGACGGACGCGGCCTATGCCTCCTG
GGTGCGCACTGGAGCGATGGAGTACGGGCAAGGCCTTCCCCCTCTATCGC
TCGCCCAGCGCGAAGAGCTCCTTCGCGTCTACCCTCCCCGGGGGGACGGG
AAAAACGCCGAGAACGTCGCGGCCATCATTGCCCACGTCCGCTACGCCTG
CCCCAGCCTGTTCTTGGCCTCTCACTACGGAGGCGGGCGCCAGGACGCGT
CTGAGGGGGTTTCGGTGTGGCACGTGCAGCAAGCGGGGAGGCGTAGACAT
AACATTGAGATGCGCCCGCCCTCGGCGTATTACTATACCTTCCAGTACGT
CCAACCGCAAGAGTGCAACCCCGGATCCGAGGAGCTGGGCTGCTACCACG
GGAGTGAGATGCCCTACTTGTGGGCCAAGCCCGGCTTGACCCCATGCGGA
GACGGGGAAACGAACGGCCCGGAGACGGCGATGGCGCGGGCGATGCGGAG
CTACTGGGGCGCCTTCGTTCGCTCGGGGGGCGCGAGTCCGAGTAGGCTCG
AGTTGCGCGAAGCGGAGGGGCTTGGAACCGCGGTGGTGCGGAGGGCGAGC
GAGGGGCCATCGCTAGGATCGCATGGCGTTCTGCGCGAGGACGTGGAGTG
GCCCGCTTACGACGACGAGGGGGGGGGTGCGCTCGTTCTGCAGCTCGACG
CGGGCAACGTAACTGCTGTGCCGCGAGACCTGAGGAAACAGTGTGCATTT
TGGGACTCAATTGATGTATATAGCAAGTAAGGAAACGAGCGGGACGACAG
CAAAAATTGTCGCACTTACGATTTTTTGAGTATTCTTTCGGGCTTGCGAT
TGATCCGAGTTCGATTTCGAAATCCTTTTTTATCGCATTCAATGTTAAGC
GCTGCAATTTCCCACTCAAAGATTCCAAATTTCATGTATATGTGCATTAC
AGCATGCAGAACATCCCTTCTTGCCCCCCTTGCCTCTTTCTGTTCTCTTC
GTCCCGACCAGCGCCCGCTCTGACCCC
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protein sequence of rna5300

>rna5300-protein ID=rna5300-protein|Name=rna5300|organism=Nannochloropsis gaditana|type=polypeptide|length=652bp
MGQQQISWQLKIELLALFLAGYFASLSSAFVSRPHGPHAPVPSRRGTGRR
AVSLPQEFASLDILLSESSLDIDIPVLSPTSALEAFAVLAVPLLLFAGLQ
LTRQGEGTGNTEKDDPINDMSTNDILSKLFKEVEGKEPTSMFSSSASPLA
SAKLDARGGAGGRGLLERPPAPAPVDEELRLRKARALEEDDRARTAAARA
REEEDKALIAAAAEKAAAAKSAQEKERLRLEAAAKAMEARVAEEAKAREE
AAAEALKKKEEEKEREEELRRQRETRMKEEAAKARAAAEARAAAAKAKRE
EEKEREQKRKLLARMIREDAAKKQEEHEKRLLEAWKEQELARRAERAQKE
RQPTKGVSVTSTERGRGKKSRAGKKESKISVDPVVSAAVAPAEKPMVAGE
KEGKEWEEMRRLEEESAKLLELSPSARGNKRAFVPEGEFVKRGGRASVPV
GVQTADLAEPAIERKVSKAEAEKERKELLMGLDAVMQDLQRRAEEKKGQL
TAVREKKIAASDPASPPGPKKTGRTKGKAASAPAAGGVPPTPGKGDDLTV
VARKLTVPKLKAILQAQQVKPSSSRAKKDELVRLVVALAVENPTILAEEG
ARRDVLHAVMHIYMKFGIFEWEIAALNIECDKKGFRNRTRINRKPERILK
KS
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mRNA from alignment at CM002465.1:656430..658711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5300 ID=rna5300|Name=rna5300|organism=Nannochloropsis gaditana|type=mRNA|length=2282bp|location=Sequence derived from alignment at CM002465.1:656430..658711- (Nannochloropsis gaditana)
CGTCTCAGCGAATAGTGTCTGGGAGCGAACGGATGTCTGACTGCGCTGCT GCGTACATTACACCCTGTCACTGAAAACGTTAGTCAATACAATTGCCGAC CTCCACTCTTACATATGCATTCAAAGCTAACAGAAATTGAACTGGCAAAT TTTAGAGCGCGTAAAAAACTTCCTGTGTCAGACGCTTTTGGAAGCTCTTT CCCTCAAAGAAGCGTCTTTCTGCATTTTTTCGTACTACTGGCCCGTCTCC ATTAGCTTTTAGAATACCATGGGGCAGCAACAAATATCTTGGCAACTCAA AATTGAACTTTTGGCATTGTTTTTAGCCGGATATTTTGCCAGCTTGTCGT CTGCCTTTGTGAGCCGGCCTCACGGCCCCCATGCCCCTGTTCCATCTCGG CGGGGGACTGGAAGACGCGCCGTCTCGCTCCCGCAGGAGTTCGCTTCCCT GGACATCCTGCTGTCGGAATCGAGCCTGGACATTGACATCCCCGTCTTGT CACCGACCTCAGCATTGGAGGCGTTTGCGGTGCTGGCGGTGCCCCTCCTC CTGTTCGCAGGCCTCCAACTCACCCGTCAGGGCGAGGGGACGGGAAACAC GGAGAAAGACGACCCCATCAACGACATGAGCACCAACGACATACTCAGCA AACTATTCAAGGAGGTGGAAGGGAAAGAGCCCACATCCATGTTCTCTTCC TCCGCCTCGCCCCTCGCGTCCGCCAAGCTGGATGCCCGGGGCGGGGCGGG GGGGCGGGGCCTCCTGGAAAGACCTCCAGCCCCAGCGCCTGTGGATGAGG AATTGAGATTAAGGAAGGCGAGGGCCTTGGAGGAGGACGATCGGGCCAGA ACGGCGGCGGCGAGGGCCAGAGAAGAGGAAGACAAGGCCCTCATCGCGGC TGCGGCGGAGAAGGCAGCCGCCGCCAAGTCCGCCCAGGAGAAGGAGCGGC TCCGCCTGGAGGCCGCGGCGAAGGCGATGGAAGCGAGAGTCGCGGAGGAA GCGAAGGCTCGAGAGGAAGCAGCTGCGGAGGCTCTAAAGAAAAAAGAGGA GGAGAAGGAACGGGAGGAAGAGCTGCGAAGACAACGGGAGACGAGGATGA AGGAGGAGGCCGCGAAGGCCCGGGCTGCTGCGGAAGCCCGGGCTGCGGCC GCGAAAGCGAAACGTGAGGAGGAGAAGGAGAGGGAGCAGAAGCGTAAGCT TCTTGCGCGGATGATACGGGAGGATGCGGCCAAGAAGCAGGAAGAGCACG AGAAGCGTCTGCTCGAGGCATGGAAGGAGCAGGAGCTGGCCCGGCGCGCC GAACGGGCTCAAAAGGAGAGGCAGCCCACGAAGGGAGTTTCCGTGACGAG CACTGAAAGGGGGAGGGGAAAGAAAAGCAGGGCGGGGAAAAAGGAAAGTA AAATCTCTGTCGACCCGGTCGTGTCCGCTGCAGTGGCTCCCGCCGAGAAG CCGATGGTGGCGGGCGAGAAGGAGGGCAAAGAGTGGGAGGAGATGCGCCG CCTGGAGGAAGAGAGCGCGAAGCTCTTAGAGTTGTCTCCCTCCGCCCGCG GCAACAAAAGAGCCTTTGTTCCCGAGGGAGAATTTGTGAAGAGGGGGGGC AGGGCTTCGGTCCCGGTGGGCGTGCAGACGGCGGACTTGGCGGAGCCCGC GATCGAGAGAAAGGTGAGCAAAGCCGAGGCAGAGAAAGAGCGGAAGGAGC TTCTCATGGGCCTGGATGCGGTGATGCAGGACCTGCAGCGACGGGCGGAG GAGAAGAAGGGGCAGCTCACAGCTGTCAGGGAGAAGAAAATCGCTGCCAG CGACCCGGCCTCGCCTCCCGGCCCCAAGAAGACCGGACGGACGAAGGGCA AAGCCGCGTCGGCGCCGGCGGCGGGAGGAGTGCCACCGACACCGGGGAAA GGCGATGATTTGACCGTAGTCGCCAGGAAGCTCACAGTGCCCAAGCTCAA GGCGATCCTGCAGGCGCAGCAGGTCAAGCCATCCTCGAGCCGTGCCAAGA AGGACGAGCTCGTGCGCCTGGTGGTCGCTCTAGCGGTGGAGAACCCAACG ATCTTGGCAGAGGAGTGAGGGGGGTCAGAGCGGGCGCTGGTCGGGACGAA GAGAACAGAAAGAGGCAAGGGGGGCAAGAAGGGATGTTCTGCATGCTGTA ATGCACATATACATGAAATTTGGAATCTTTGAGTGGGAAATTGCAGCGCT TAACATTGAATGCGATAAAAAAGGATTTCGAAATCGAACTCGGATCAATC GCAAGCCCGAAAGAATACTCAAAAAATCGTAA
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Coding sequence (CDS) from alignment at CM002465.1:656430..658711-

>rna5300 ID=rna5300|Name=rna5300|organism=Nannochloropsis gaditana|type=CDS|length=3918bp|location=Sequence derived from alignment at CM002465.1:656430..658711- (Nannochloropsis gaditana)
GGGGGCAAGAAGGGATGTTCTGCATGCTGTAATGCACATATACATGAAAT
TTGGAATCTTTGAGTGGGAAATTGCAGCGCTTAACATTGAATGCGATAAA
AAAGGATTTCGAAATCGAACTCGGATCAATCGCAAGCCCGAAAGAATACT
CAAAAAATCGTAAATGGGGCAGCAACAAATATCTTGGCAACTCAAAATTG
AACTTTTGGCATTGTTTTTAGCCGGATATTTTGCCAGCTTGTCGTCTGCC
TTTGTGAGCCGGCCTCACGGCCCCCATGCCCCTGTTCCATCTCGGCGGGG
GACTGGAAGACGCGCCGTCTCGCTCCCGCAGGAGTTCGCTTCCCTGGACA
TCCTGCTGTCGGAATCGAGCCTGGACATTGACATCCCCGTCTTGTCACCG
ACCTCAGCATTGGAGGCGTTTGCGGTGCTGGCGGTGCCCCTCCTCCTGTT
CGCAGGCCTCCAACTCACCCGTCAGGGCGAGGGGACGGGAAACACGGAGA
AAGACGACCCCATCAACGACATGAGCACCAACGACATACTCAGCAAACTA
TTCAAGGAGGTGGAAGGGAAAGAGCCCACATCCATGTTCTCTTCCTCCGC
CTCGCCCCTCGCGTCCGCCAAGCTGGATGCCCGGGGCGGGGCGGGGGGGC
GGGGCCTCCTGGAAAGACCTCCAGCCCCAGCGCCTGTGGATGAGGAATTG
AGATTAAGGAAGGCGAGGGCCTTGGAGGAGGACGATCGGGCCAGAACGGC
GGCGGCGAGGGCCAGAGAAGAGGAAGACAAGGCCCTCATCGCGGCTGCGG
CGGAGAAGGCAGCCGCCGCCAAGTCCGCCCAGGAGAAGGAGCGGCTCCGC
CTGGAGGCCGCGGCGAAGGCGATGGAAGCGAGAGTCGCGGAGGAAGCGAA
GGCTCGAGAGGAAGCAGCTGCGGAGGCTCTAAAGAAAAAAGAGGAGGAGA
AGGAACGGGAGGAAGAGCTGCGAAGACAACGGGAGACGAGGATGAAGGAG
GAGGCCGCGAAGGCCCGGGCTGCTGCGGAAGCCCGGGCTGCGGCCGCGAA
AGCGAAACGTGAGGAGGAGAAGGAGAGGGAGCAGAAGCGTAAGCTTCTTG
CGCGGATGATACGGGAGGATGCGGCCAAGAAGCAGGAAGAGCACGAGAAG
CGTCTGCTCGAGGCATGGAAGGAGCAGGAGCTGGCCCGGCGCGCCGAACG
GGCTCAAAAGGAGAGGCAGCCCACGAAGGGAGTTTCCGTGACGAGCACTG
AAAGGGGGAGGGGAAAGAAAAGCAGGGCGGGGAAAAAGGAAAGTAAAATC
TCTGTCGACCCGGTCGTGTCCGCTGCAGTGGCTCCCGCCGAGAAGCCGAT
GGTGGCGGGCGAGAAGGAGGGCAAAGAGTGGGAGGAGATGCGCCGCCTGG
AGGAAGAGAGCGCGAAGCTCTTAGAGTTGTCTCCCTCCGCCCGCGGCAAC
AAAAGAGCCTTTGTTCCCGAGGGAGAATTTGTGAAGAGGGGGGGCAGGGC
TTCGGTCCCGGTGGGCGTGCAGACGGCGGACTTGGCGGAGCCCGCGATCG
AGAGAAAGGTGAGCAAAGCCGAGGCAGAGAAAGAGCGGAAGGAGCTTCTC
ATGGGCCTGGATGCGGTGATGCAGGACCTGCAGCGACGGGCGGAGGAGAA
GAAGGGGCAGCTCACAGCTGTCAGGGAGAAGAAAATCGCTGCCAGCGACC
CGGCCTCGCCTCCCGGCCCCAAGAAGACCGGACGGACGAAGGGCAAAGCC
GCGTCGGCGCCGGCGGCGGGAGGAGTGCCACCGACACCGGGGAAAGGCGA
TGATTTGACCGTAGTCGCCAGGAAGCTCACAGTGCCCAAGCTCAAGGCGA
TCCTGCAGGCGCAGCAGGTCAAGCCATCCTCGAGCCGTGCCAAGAAGGAC
GAGCTCGTGCGCCTGGTGGTCGCTCTAGCGGTGGAGAACCCAACGATCTT
GGCAGAGGAGGGGGCAAGAAGGGATGTTCTGCATGCTGTAATGCACATAT
ACATGAAATTTGGAATCTTTGAGTGGGAAATTGCAGCGCTTAACATTGAA
TGCGATAAAAAAGGATTTCGAAATCGAACTCGGATCAATCGCAAGCCCGA
AAGAATACTCAAAAAATCGTAAATGGGGCAGCAACAAATATCTTGGCAAC
TCAAAATTGAACTTTTGGCATTGTTTTTAGCCGGATATTTTGCCAGCTTG
TCGTCTGCCTTTGTGAGCCGGCCTCACGGCCCCCATGCCCCTGTTCCATC
TCGGCGGGGGACTGGAAGACGCGCCGTCTCGCTCCCGCAGGAGTTCGCTT
CCCTGGACATCCTGCTGTCGGAATCGAGCCTGGACATTGACATCCCCGTC
TTGTCACCGACCTCAGCATTGGAGGCGTTTGCGGTGCTGGCGGTGCCCCT
CCTCCTGTTCGCAGGCCTCCAACTCACCCGTCAGGGCGAGGGGACGGGAA
ACACGGAGAAAGACGACCCCATCAACGACATGAGCACCAACGACATACTC
AGCAAACTATTCAAGGAGGTGGAAGGGAAAGAGCCCACATCCATGTTCTC
TTCCTCCGCCTCGCCCCTCGCGTCCGCCAAGCTGGATGCCCGGGGCGGGG
CGGGGGGGCGGGGCCTCCTGGAAAGACCTCCAGCCCCAGCGCCTGTGGAT
GAGGAATTGAGATTAAGGAAGGCGAGGGCCTTGGAGGAGGACGATCGGGC
CAGAACGGCGGCGGCGAGGGCCAGAGAAGAGGAAGACAAGGCCCTCATCG
CGGCTGCGGCGGAGAAGGCAGCCGCCGCCAAGTCCGCCCAGGAGAAGGAG
CGGCTCCGCCTGGAGGCCGCGGCGAAGGCGATGGAAGCGAGAGTCGCGGA
GGAAGCGAAGGCTCGAGAGGAAGCAGCTGCGGAGGCTCTAAAGAAAAAAG
AGGAGGAGAAGGAACGGGAGGAAGAGCTGCGAAGACAACGGGAGACGAGG
ATGAAGGAGGAGGCCGCGAAGGCCCGGGCTGCTGCGGAAGCCCGGGCTGC
GGCCGCGAAAGCGAAACGTGAGGAGGAGAAGGAGAGGGAGCAGAAGCGTA
AGCTTCTTGCGCGGATGATACGGGAGGATGCGGCCAAGAAGCAGGAAGAG
CACGAGAAGCGTCTGCTCGAGGCATGGAAGGAGCAGGAGCTGGCCCGGCG
CGCCGAACGGGCTCAAAAGGAGAGGCAGCCCACGAAGGGAGTTTCCGTGA
CGAGCACTGAAAGGGGGAGGGGAAAGAAAAGCAGGGCGGGGAAAAAGGAA
AGTAAAATCTCTGTCGACCCGGTCGTGTCCGCTGCAGTGGCTCCCGCCGA
GAAGCCGATGGTGGCGGGCGAGAAGGAGGGCAAAGAGTGGGAGGAGATGC
GCCGCCTGGAGGAAGAGAGCGCGAAGCTCTTAGAGTTGTCTCCCTCCGCC
CGCGGCAACAAAAGAGCCTTTGTTCCCGAGGGAGAATTTGTGAAGAGGGG
GGGCAGGGCTTCGGTCCCGGTGGGCGTGCAGACGGCGGACTTGGCGGAGC
CCGCGATCGAGAGAAAGGTGAGCAAAGCCGAGGCAGAGAAAGAGCGGAAG
GAGCTTCTCATGGGCCTGGATGCGGTGATGCAGGACCTGCAGCGACGGGC
GGAGGAGAAGAAGGGGCAGCTCACAGCTGTCAGGGAGAAGAAAATCGCTG
CCAGCGACCCGGCCTCGCCTCCCGGCCCCAAGAAGACCGGACGGACGAAG
GGCAAAGCCGCGTCGGCGCCGGCGGCGGGAGGAGTGCCACCGACACCGGG
GAAAGGCGATGATTTGACCGTAGTCGCCAGGAAGCTCACAGTGCCCAAGC
TCAAGGCGATCCTGCAGGCGCAGCAGGTCAAGCCATCCTCGAGCCGTGCC
AAGAAGGACGAGCTCGTGCGCCTGGTGGTCGCTCTAGCGGTGGAGAACCC
AACGATCTTGGCAGAGGA
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Synonyms
Publications