Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100005g93.6661.mrna |
Orig protein id | gnl|cribi|Naga_100005g93.6661 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002465.1 | supercontig | CM002465.1:656430..658711 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5300 ID=rna5300|Name=rna5300|organism=Nannochloropsis gaditana|type=mRNA|length=2427bp ACGCGCGTCCTAGCCCGTACATTTCCCTCCTGTCGTCATGATACATTATG CACGGCTTAGTTGAGGTACCAAGGAAAGCGCATGCTCGCCTTCTCGTGCA CTTCTAGAAATAGGCCGGTTTACAATCACGCGACGTGCTTCAAGTCCCTC GTTAGTGACGAGGCGGGCGCTTGCACTGCTCAATAAGGACAAGGCCGTGC TTGTCTCCCGTAGATTCCTTTTATTATCACGACAAACACATAGAATGGAC ACTTCACAGCACAGGACGCCTTTGGGCATGGAGGCGGCCGATAAAAATGC ACCGTCCTCCTAAGTCGATGCGCCCACCCGCTGCATTCCTCCTCCCCGTC CTCCTCCACGCCTGTTTGAACATTCCCCATGTCACTGCCGATGACATTAT CACGATCCGGGTTCCGACCATGGGTTTGGAAATACAAGGGCTTTCAAGCA AATGCGGTTCTGATCAATTTTGGGGCATTCCATACGCCCAAAGGCCCGTC GAGCGCTGGAAGCGGGGGCAACCCTCGTGGGCGGAGCCCTCCACGATGCC TGAAGGCTTCGCACAATTTGACGCAAGCGGGCACATGCCGCAGGAGCGCT GCCCTCAGCTATGCGATGGCGTTGTAGTGGGCTCGGAGGACTGTCTCCTG CTGAACGTCTTTCGGCCTGCCTCTCCGGGGAGCCCGATGCCCGTGATGGT CTTTATCCACGGCGGCTCCTTTACTGAAGGAGGCATCGACTCCCCTCTCT TAGATGGCAGCTCCCTCGCGGCGGAAGAGGGCATCGTGATTGTCACTATC AATTACCGATTGGGGGCCCTCGGGTTCCTGACAGACCCGACCTTGCCTGG GAATGGCAACTTGGGCATGCTCGACCAGCAGCTGGCCCTAGAGTGGGTCC GCGACAACATCGGTTTCTTCGGGGGGGACGCAGAGGCTGTCACATTGGCG GGGCAGTCAGCAGGAGCCTTTAGTGCCTGCTTGCACATGCTGGCCCCCAA GAGCCGCGCCATGCTGCAGGCCCTGGTGATGGAGAGCGGAGCGTGCGTGG CCTTGCCCTTGCAGGAGGCGAGGACCCGGACAGAGACCTTCGCGGCTGGC CTGGGGTGCCGGCCGGGTCCCGGTAGGCGCAGCCCCAGCAACGGCTCGAG CGAGGGTGCGGATGACGGCGGGCTGGTCGCCTGCCTGACCCGTCTCTCCC TGGAGGTCCTGATCCCCGAGTCCTCCGAGAGGGGCCGGGAGATGTACCAC TACTGGGCGCCCGCCCTCGACGGCGACCTTTTCCTCCCTGCCTCGCCCGC AACGCTACTCGACCCCTCCGTCACGCCCCCCCTTGCACCCGCGTCACCGC TAAACGTCCTCCTGGGCTGCAACCGCGACGAGGGCAGTGTCTTCGTCGCC TCCACAGGGCTGGGGGGCGCCGGCGGGACGGACGCGGCCTATGCCTCCTG GGTGCGCACTGGAGCGATGGAGTACGGGCAAGGCCTTCCCCCTCTATCGC TCGCCCAGCGCGAAGAGCTCCTTCGCGTCTACCCTCCCCGGGGGGACGGG AAAAACGCCGAGAACGTCGCGGCCATCATTGCCCACGTCCGCTACGCCTG CCCCAGCCTGTTCTTGGCCTCTCACTACGGAGGCGGGCGCCAGGACGCGT CTGAGGGGGTTTCGGTGTGGCACGTGCAGCAAGCGGGGAGGCGTAGACAT AACATTGAGATGCGCCCGCCCTCGGCGTATTACTATACCTTCCAGTACGT CCAACCGCAAGAGTGCAACCCCGGATCCGAGGAGCTGGGCTGCTACCACG GGAGTGAGATGCCCTACTTGTGGGCCAAGCCCGGCTTGACCCCATGCGGA GACGGGGAAACGAACGGCCCGGAGACGGCGATGGCGCGGGCGATGCGGAG CTACTGGGGCGCCTTCGTTCGCTCGGGGGGCGCGAGTCCGAGTAGGCTCG AGTTGCGCGAAGCGGAGGGGCTTGGAACCGCGGTGGTGCGGAGGGCGAGC GAGGGGCCATCGCTAGGATCGCATGGCGTTCTGCGCGAGGACGTGGAGTG GCCCGCTTACGACGACGAGGGGGGGGGTGCGCTCGTTCTGCAGCTCGACG CGGGCAACGTAACTGCTGTGCCGCGAGACCTGAGGAAACAGTGTGCATTT TGGGACTCAATTGATGTATATAGCAAGTAAGGAAACGAGCGGGACGACAG CAAAAATTGTCGCACTTACGATTTTTTGAGTATTCTTTCGGGCTTGCGAT TGATCCGAGTTCGATTTCGAAATCCTTTTTTATCGCATTCAATGTTAAGC GCTGCAATTTCCCACTCAAAGATTCCAAATTTCATGTATATGTGCATTAC AGCATGCAGAACATCCCTTCTTGCCCCCCTTGCCTCTTTCTGTTCTCTTC GTCCCGACCAGCGCCCGCTCTGACCCC back to topprotein sequence of rna5300 >rna5300-protein ID=rna5300-protein|Name=rna5300|organism=Nannochloropsis gaditana|type=polypeptide|length=652bp MGQQQISWQLKIELLALFLAGYFASLSSAFVSRPHGPHAPVPSRRGTGRR AVSLPQEFASLDILLSESSLDIDIPVLSPTSALEAFAVLAVPLLLFAGLQ LTRQGEGTGNTEKDDPINDMSTNDILSKLFKEVEGKEPTSMFSSSASPLA SAKLDARGGAGGRGLLERPPAPAPVDEELRLRKARALEEDDRARTAAARA REEEDKALIAAAAEKAAAAKSAQEKERLRLEAAAKAMEARVAEEAKAREE AAAEALKKKEEEKEREEELRRQRETRMKEEAAKARAAAEARAAAAKAKRE EEKEREQKRKLLARMIREDAAKKQEEHEKRLLEAWKEQELARRAERAQKE RQPTKGVSVTSTERGRGKKSRAGKKESKISVDPVVSAAVAPAEKPMVAGE KEGKEWEEMRRLEEESAKLLELSPSARGNKRAFVPEGEFVKRGGRASVPV GVQTADLAEPAIERKVSKAEAEKERKELLMGLDAVMQDLQRRAEEKKGQL TAVREKKIAASDPASPPGPKKTGRTKGKAASAPAAGGVPPTPGKGDDLTV VARKLTVPKLKAILQAQQVKPSSSRAKKDELVRLVVALAVENPTILAEEG ARRDVLHAVMHIYMKFGIFEWEIAALNIECDKKGFRNRTRINRKPERILK KS back to topmRNA from alignment at CM002465.1:656430..658711- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5300 ID=rna5300|Name=rna5300|organism=Nannochloropsis gaditana|type=mRNA|length=2282bp|location=Sequence derived from alignment at CM002465.1:656430..658711- (Nannochloropsis gaditana) CGTCTCAGCGAATAGTGTCTGGGAGCGAACGGATGTCTGACTGCGCTGCT
GCGTACATTACACCCTGTCACTGAAAACGTTAGTCAATACAATTGCCGAC
CTCCACTCTTACATATGCATTCAAAGCTAACAGAAATTGAACTGGCAAAT
TTTAGAGCGCGTAAAAAACTTCCTGTGTCAGACGCTTTTGGAAGCTCTTT
CCCTCAAAGAAGCGTCTTTCTGCATTTTTTCGTACTACTGGCCCGTCTCC
ATTAGCTTTTAGAATACCATGGGGCAGCAACAAATATCTTGGCAACTCAA
AATTGAACTTTTGGCATTGTTTTTAGCCGGATATTTTGCCAGCTTGTCGT
CTGCCTTTGTGAGCCGGCCTCACGGCCCCCATGCCCCTGTTCCATCTCGG
CGGGGGACTGGAAGACGCGCCGTCTCGCTCCCGCAGGAGTTCGCTTCCCT
GGACATCCTGCTGTCGGAATCGAGCCTGGACATTGACATCCCCGTCTTGT
CACCGACCTCAGCATTGGAGGCGTTTGCGGTGCTGGCGGTGCCCCTCCTC
CTGTTCGCAGGCCTCCAACTCACCCGTCAGGGCGAGGGGACGGGAAACAC
GGAGAAAGACGACCCCATCAACGACATGAGCACCAACGACATACTCAGCA
AACTATTCAAGGAGGTGGAAGGGAAAGAGCCCACATCCATGTTCTCTTCC
TCCGCCTCGCCCCTCGCGTCCGCCAAGCTGGATGCCCGGGGCGGGGCGGG
GGGGCGGGGCCTCCTGGAAAGACCTCCAGCCCCAGCGCCTGTGGATGAGG
AATTGAGATTAAGGAAGGCGAGGGCCTTGGAGGAGGACGATCGGGCCAGA
ACGGCGGCGGCGAGGGCCAGAGAAGAGGAAGACAAGGCCCTCATCGCGGC
TGCGGCGGAGAAGGCAGCCGCCGCCAAGTCCGCCCAGGAGAAGGAGCGGC
TCCGCCTGGAGGCCGCGGCGAAGGCGATGGAAGCGAGAGTCGCGGAGGAA
GCGAAGGCTCGAGAGGAAGCAGCTGCGGAGGCTCTAAAGAAAAAAGAGGA
GGAGAAGGAACGGGAGGAAGAGCTGCGAAGACAACGGGAGACGAGGATGA
AGGAGGAGGCCGCGAAGGCCCGGGCTGCTGCGGAAGCCCGGGCTGCGGCC
GCGAAAGCGAAACGTGAGGAGGAGAAGGAGAGGGAGCAGAAGCGTAAGCT
TCTTGCGCGGATGATACGGGAGGATGCGGCCAAGAAGCAGGAAGAGCACG
AGAAGCGTCTGCTCGAGGCATGGAAGGAGCAGGAGCTGGCCCGGCGCGCC
GAACGGGCTCAAAAGGAGAGGCAGCCCACGAAGGGAGTTTCCGTGACGAG
CACTGAAAGGGGGAGGGGAAAGAAAAGCAGGGCGGGGAAAAAGGAAAGTA
AAATCTCTGTCGACCCGGTCGTGTCCGCTGCAGTGGCTCCCGCCGAGAAG
CCGATGGTGGCGGGCGAGAAGGAGGGCAAAGAGTGGGAGGAGATGCGCCG
CCTGGAGGAAGAGAGCGCGAAGCTCTTAGAGTTGTCTCCCTCCGCCCGCG
GCAACAAAAGAGCCTTTGTTCCCGAGGGAGAATTTGTGAAGAGGGGGGGC
AGGGCTTCGGTCCCGGTGGGCGTGCAGACGGCGGACTTGGCGGAGCCCGC
GATCGAGAGAAAGGTGAGCAAAGCCGAGGCAGAGAAAGAGCGGAAGGAGC
TTCTCATGGGCCTGGATGCGGTGATGCAGGACCTGCAGCGACGGGCGGAG
GAGAAGAAGGGGCAGCTCACAGCTGTCAGGGAGAAGAAAATCGCTGCCAG
CGACCCGGCCTCGCCTCCCGGCCCCAAGAAGACCGGACGGACGAAGGGCA
AAGCCGCGTCGGCGCCGGCGGCGGGAGGAGTGCCACCGACACCGGGGAAA
GGCGATGATTTGACCGTAGTCGCCAGGAAGCTCACAGTGCCCAAGCTCAA
GGCGATCCTGCAGGCGCAGCAGGTCAAGCCATCCTCGAGCCGTGCCAAGA
AGGACGAGCTCGTGCGCCTGGTGGTCGCTCTAGCGGTGGAGAACCCAACG
ATCTTGGCAGAGGAGTGAGGGGGGTCAGAGCGGGCGCTGGTCGGGACGAA
GAGAACAGAAAGAGGCAAGGGGGGCAAGAAGGGATGTTCTGCATGCTGTA
ATGCACATATACATGAAATTTGGAATCTTTGAGTGGGAAATTGCAGCGCT
TAACATTGAATGCGATAAAAAAGGATTTCGAAATCGAACTCGGATCAATC
GCAAGCCCGAAAGAATACTCAAAAAATCGTAA back to topCoding sequence (CDS) from alignment at CM002465.1:656430..658711- >rna5300 ID=rna5300|Name=rna5300|organism=Nannochloropsis gaditana|type=CDS|length=3918bp|location=Sequence derived from alignment at CM002465.1:656430..658711- (Nannochloropsis gaditana) GGGGGCAAGAAGGGATGTTCTGCATGCTGTAATGCACATATACATGAAAT TTGGAATCTTTGAGTGGGAAATTGCAGCGCTTAACATTGAATGCGATAAA AAAGGATTTCGAAATCGAACTCGGATCAATCGCAAGCCCGAAAGAATACT CAAAAAATCGTAAATGGGGCAGCAACAAATATCTTGGCAACTCAAAATTG AACTTTTGGCATTGTTTTTAGCCGGATATTTTGCCAGCTTGTCGTCTGCC TTTGTGAGCCGGCCTCACGGCCCCCATGCCCCTGTTCCATCTCGGCGGGG GACTGGAAGACGCGCCGTCTCGCTCCCGCAGGAGTTCGCTTCCCTGGACA TCCTGCTGTCGGAATCGAGCCTGGACATTGACATCCCCGTCTTGTCACCG ACCTCAGCATTGGAGGCGTTTGCGGTGCTGGCGGTGCCCCTCCTCCTGTT CGCAGGCCTCCAACTCACCCGTCAGGGCGAGGGGACGGGAAACACGGAGA AAGACGACCCCATCAACGACATGAGCACCAACGACATACTCAGCAAACTA TTCAAGGAGGTGGAAGGGAAAGAGCCCACATCCATGTTCTCTTCCTCCGC CTCGCCCCTCGCGTCCGCCAAGCTGGATGCCCGGGGCGGGGCGGGGGGGC GGGGCCTCCTGGAAAGACCTCCAGCCCCAGCGCCTGTGGATGAGGAATTG AGATTAAGGAAGGCGAGGGCCTTGGAGGAGGACGATCGGGCCAGAACGGC GGCGGCGAGGGCCAGAGAAGAGGAAGACAAGGCCCTCATCGCGGCTGCGG CGGAGAAGGCAGCCGCCGCCAAGTCCGCCCAGGAGAAGGAGCGGCTCCGC CTGGAGGCCGCGGCGAAGGCGATGGAAGCGAGAGTCGCGGAGGAAGCGAA GGCTCGAGAGGAAGCAGCTGCGGAGGCTCTAAAGAAAAAAGAGGAGGAGA AGGAACGGGAGGAAGAGCTGCGAAGACAACGGGAGACGAGGATGAAGGAG GAGGCCGCGAAGGCCCGGGCTGCTGCGGAAGCCCGGGCTGCGGCCGCGAA AGCGAAACGTGAGGAGGAGAAGGAGAGGGAGCAGAAGCGTAAGCTTCTTG CGCGGATGATACGGGAGGATGCGGCCAAGAAGCAGGAAGAGCACGAGAAG CGTCTGCTCGAGGCATGGAAGGAGCAGGAGCTGGCCCGGCGCGCCGAACG GGCTCAAAAGGAGAGGCAGCCCACGAAGGGAGTTTCCGTGACGAGCACTG AAAGGGGGAGGGGAAAGAAAAGCAGGGCGGGGAAAAAGGAAAGTAAAATC TCTGTCGACCCGGTCGTGTCCGCTGCAGTGGCTCCCGCCGAGAAGCCGAT GGTGGCGGGCGAGAAGGAGGGCAAAGAGTGGGAGGAGATGCGCCGCCTGG AGGAAGAGAGCGCGAAGCTCTTAGAGTTGTCTCCCTCCGCCCGCGGCAAC AAAAGAGCCTTTGTTCCCGAGGGAGAATTTGTGAAGAGGGGGGGCAGGGC TTCGGTCCCGGTGGGCGTGCAGACGGCGGACTTGGCGGAGCCCGCGATCG AGAGAAAGGTGAGCAAAGCCGAGGCAGAGAAAGAGCGGAAGGAGCTTCTC ATGGGCCTGGATGCGGTGATGCAGGACCTGCAGCGACGGGCGGAGGAGAA GAAGGGGCAGCTCACAGCTGTCAGGGAGAAGAAAATCGCTGCCAGCGACC CGGCCTCGCCTCCCGGCCCCAAGAAGACCGGACGGACGAAGGGCAAAGCC GCGTCGGCGCCGGCGGCGGGAGGAGTGCCACCGACACCGGGGAAAGGCGA TGATTTGACCGTAGTCGCCAGGAAGCTCACAGTGCCCAAGCTCAAGGCGA TCCTGCAGGCGCAGCAGGTCAAGCCATCCTCGAGCCGTGCCAAGAAGGAC GAGCTCGTGCGCCTGGTGGTCGCTCTAGCGGTGGAGAACCCAACGATCTT GGCAGAGGAGGGGGCAAGAAGGGATGTTCTGCATGCTGTAATGCACATAT ACATGAAATTTGGAATCTTTGAGTGGGAAATTGCAGCGCTTAACATTGAA TGCGATAAAAAAGGATTTCGAAATCGAACTCGGATCAATCGCAAGCCCGA AAGAATACTCAAAAAATCGTAAATGGGGCAGCAACAAATATCTTGGCAAC TCAAAATTGAACTTTTGGCATTGTTTTTAGCCGGATATTTTGCCAGCTTG TCGTCTGCCTTTGTGAGCCGGCCTCACGGCCCCCATGCCCCTGTTCCATC TCGGCGGGGGACTGGAAGACGCGCCGTCTCGCTCCCGCAGGAGTTCGCTT CCCTGGACATCCTGCTGTCGGAATCGAGCCTGGACATTGACATCCCCGTC TTGTCACCGACCTCAGCATTGGAGGCGTTTGCGGTGCTGGCGGTGCCCCT CCTCCTGTTCGCAGGCCTCCAACTCACCCGTCAGGGCGAGGGGACGGGAA ACACGGAGAAAGACGACCCCATCAACGACATGAGCACCAACGACATACTC AGCAAACTATTCAAGGAGGTGGAAGGGAAAGAGCCCACATCCATGTTCTC TTCCTCCGCCTCGCCCCTCGCGTCCGCCAAGCTGGATGCCCGGGGCGGGG CGGGGGGGCGGGGCCTCCTGGAAAGACCTCCAGCCCCAGCGCCTGTGGAT GAGGAATTGAGATTAAGGAAGGCGAGGGCCTTGGAGGAGGACGATCGGGC CAGAACGGCGGCGGCGAGGGCCAGAGAAGAGGAAGACAAGGCCCTCATCG CGGCTGCGGCGGAGAAGGCAGCCGCCGCCAAGTCCGCCCAGGAGAAGGAG CGGCTCCGCCTGGAGGCCGCGGCGAAGGCGATGGAAGCGAGAGTCGCGGA GGAAGCGAAGGCTCGAGAGGAAGCAGCTGCGGAGGCTCTAAAGAAAAAAG AGGAGGAGAAGGAACGGGAGGAAGAGCTGCGAAGACAACGGGAGACGAGG ATGAAGGAGGAGGCCGCGAAGGCCCGGGCTGCTGCGGAAGCCCGGGCTGC GGCCGCGAAAGCGAAACGTGAGGAGGAGAAGGAGAGGGAGCAGAAGCGTA AGCTTCTTGCGCGGATGATACGGGAGGATGCGGCCAAGAAGCAGGAAGAG CACGAGAAGCGTCTGCTCGAGGCATGGAAGGAGCAGGAGCTGGCCCGGCG CGCCGAACGGGCTCAAAAGGAGAGGCAGCCCACGAAGGGAGTTTCCGTGA CGAGCACTGAAAGGGGGAGGGGAAAGAAAAGCAGGGCGGGGAAAAAGGAA AGTAAAATCTCTGTCGACCCGGTCGTGTCCGCTGCAGTGGCTCCCGCCGA GAAGCCGATGGTGGCGGGCGAGAAGGAGGGCAAAGAGTGGGAGGAGATGC GCCGCCTGGAGGAAGAGAGCGCGAAGCTCTTAGAGTTGTCTCCCTCCGCC CGCGGCAACAAAAGAGCCTTTGTTCCCGAGGGAGAATTTGTGAAGAGGGG GGGCAGGGCTTCGGTCCCGGTGGGCGTGCAGACGGCGGACTTGGCGGAGC CCGCGATCGAGAGAAAGGTGAGCAAAGCCGAGGCAGAGAAAGAGCGGAAG GAGCTTCTCATGGGCCTGGATGCGGTGATGCAGGACCTGCAGCGACGGGC GGAGGAGAAGAAGGGGCAGCTCACAGCTGTCAGGGAGAAGAAAATCGCTG CCAGCGACCCGGCCTCGCCTCCCGGCCCCAAGAAGACCGGACGGACGAAG GGCAAAGCCGCGTCGGCGCCGGCGGCGGGAGGAGTGCCACCGACACCGGG GAAAGGCGATGATTTGACCGTAGTCGCCAGGAAGCTCACAGTGCCCAAGC TCAAGGCGATCCTGCAGGCGCAGCAGGTCAAGCCATCCTCGAGCCGTGCC AAGAAGGACGAGCTCGTGCGCCTGGTGGTCGCTCTAGCGGTGGAGAACCC AACGATCTTGGCAGAGGA back to top
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