rna53, rna53 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna53
Unique Name	rna53
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1332
Alignment location	CM002455.1:160198..160596 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100634g2.4697.mrna
Orig protein id	gnl\|cribi\|Naga_100634g2.4697
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:160198..160596 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100634g2	gene52	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna53	rna53-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30620.1	cds53	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:160198..160596-
coding sequence from alignment at CM002455.1:160198..160596-

mRNA sequence

>rna53 ID=rna53|Name=rna53|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp
AATCTGGGAGACAATATCTCTCTTGGAATTCTACAACAGCTTGCGAGTGC
TATGTGCTTTTTTTGTGGGTTGCCGTCTCGCGAGTATCTTTGTCTGGAAG
GGGGATATCGAGAGGTCAGACTGTTTCTTACTTGGCACTGTTATTGACTG
AAAACCATTTGCGTACTTTTCCGACCCCGAAACATATTATTACATACATA
TCATCTTCGATTCCATGCAGGATTCCCTGCATGCCTGTCCATTTTCTCCG
CAATCCTTTACTGTGCTCCGTCTCACACACCGCCACCACGCTGCTTTGCG
CCTTACCCGTCCTTCGGGCAACTTTCGTCGCCCCTGTCCGCAACATAGCA
TTTCTTCATTCTCCTTTCAACCGATTTCCCTCAAGTTTGACGCCTATGGC
CACCATGAAAGCAGCTGAAATCGGAGAAGGCGGCCTTGCCGATATAGGAC
AGGCCCGCTCATCGTCGCCCACTGCCTCAAATGCTGACGACGCATCTCAC
GGAGCTAGGGGTGAAAAGAAGCCAAAATGGGTCCTGGACCTCGGCATTTC
TATGGCCCGGAACAATCGAGACGCACACAGCCGCTACATTCAGCTTGCTA
CGGTAGGATTTGGGTCGGACGACTCCTCCGTCATCAAACCTTTCGTCCGT
ACTGTTGTCTTTCGAGGCTTTTACAATGGTATGGACCCGCAGGACAAGCA
CCTGCTTAAAATCATAACAGATGCCCGCAGCGAGAAGATTCCGCAGTTGA
CCCTTCATCCCGACGCGGAGATTGCCTGGTATTTCGTCAAGACTCGGGAG
CAGTATCGGCTGCGAGGCCGCGTGGAAATTGTGACGCCCACGAGCAAAGA
CCGCCATTTACAGGCAGCACGGAAACAGCAATGGAACAATTTATCTGAGA
GCGCCCGTGCGCAATTTCTGTGGCCGTACCCCAAGCATCCATCGCCTCTC
GATCAGGATCCGAGTGTTTTTTCTCCAGACATTCCACCGACACTCGCAAG
TGCCCCCCCGGAGACCTTCTGTTTGCTGTTGGTCCGAGTCTCGGAGGTGG
ACCATTTGGACTTAAAGGCATCCCCGCAACGGCGTACGGTGCACGCGCGG
AGAAAGGGTCAAAAAGAGGGGGAGGAAGGGGACTGGGAAGTGACGAAGGT
GAATCCTTAACACGAATCCGGAGGGAACGCTCCCAAAGAAAGCCCCATTA
CCTCTCGGTAGAGGACTATGGTCTTTTCGCCTGTGCTCCTTAGATACTTG
TTTCTTCTCTGGATATATATTGTTGCTCTTCTCCACGGGTGGTCTGGACA
GAGGGAGATGCCGAACGCCTCGCGTGATTCTT

protein sequence of rna53

>rna53-protein ID=rna53-protein|Name=rna53|organism=Nannochloropsis gaditana|type=polypeptide|length=91bp
MRSTELIGGLMRRDVYACMRVCQYLYKIDDCETHSRPERVRLCHPECFPN
VPSGMKGNAAESVKGRVLRGSFDRCAVPNETWVHKGMYVWG

mRNA from alignment at CM002455.1:160198..160596-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna53 ID=rna53|Name=rna53|organism=Nannochloropsis gaditana|type=mRNA|length=399bp|location=Sequence derived from alignment at CM002455.1:160198..160596- (Nannochloropsis gaditana)
ATGCGGAGCACAGAACTGATCGGCGTGCCGGGGGGGGGCACGCGCCGAGG
TTCAAAGGAGGGGGAAAGGAAGGAGGGAACGGGTAGGAAAGGGTTTAATG
AGGAGGGATGTGTATGCGTGTATGCGTGTGTGTCAGTACCTGTACAAGAT
AGATGATTGCGAGACACACAGCGTAGTGGCGGGCCTGGGGGCCGTCACAA
TGTATGAAACGTGCGCGCGAGAAGGGAGAGGCCTGAACGAGTGCGTCTCT
GCCACCCTGAATGTTTTCCGAATGTTCCCAGTGGAATGAAAGGAAATGCG
GCAGAGTCGGTAAAGGGGCGAGTTCTGAGAGGAAGCTTCGACCGTTGCGC
CGTACCCAACGAGACTTGGGTGCATAAAGGGATGTACGTTTGGGGATAA

Coding sequence (CDS) from alignment at CM002455.1:160198..160596-

>rna53 ID=rna53|Name=rna53|organism=Nannochloropsis gaditana|type=CDS|length=828bp|location=Sequence derived from alignment at CM002455.1:160198..160596- (Nannochloropsis gaditana)
AGGCCTGAACGAGTGCGTCTCTGCCACCCTGAATGTTTTCCGAATGTTCC
CAGTGGAATGAAAGGAAATGCGGCAGAGTCGGTAAAGGGGCGAGTTCTGA
GAGGAAGCTTCGACCGTTGCGCCGTACCCAACGAGACTTGGGTGCATAAA
GGGATGTACGTTTGGGGATAAGGTTTAATGAGGAGGGATGTGTATGCGTG
TATGCGTGTGTGTCAGTACCTGTACAAGATAGATGATTGCGAGACACACA
GCATGCGGAGCACAGAACTGATCGGCAGGCCTGAACGAGTGCGTCTCTGC
CACCCTGAATGTTTTCCGAATGTTCCCAGTGGAATGAAAGGAAATGCGGC
AGAGTCGGTAAAGGGGCGAGTTCTGAGAGGAAGCTTCGACCGTTGCGCCG
TACCCAACGAGACTTGGGTGCATAAAGGGATGTACGTTTGGGGATAAGGT
TTAATGAGGAGGGATGTGTATGCGTGTATGCGTGTGTGTCAGTACCTGTA
CAAGATAGATGATTGCGAGACACACAGCATGCGGAGCACAGAACTGATCG
GCAGGCCTGAACGAGTGCGTCTCTGCCACCCTGAATGTTTTCCGAATGTT
CCCAGTGGAATGAAAGGAAATGCGGCAGAGTCGGTAAAGGGGCGAGTTCT
GAGAGGAAGCTTCGACCGTTGCGCCGTACCCAACGAGACTTGGGTGCATA
AAGGGATGTACGTTTGGGGATAAGGTTTAATGAGGAGGGATGTGTATGCG
TGTATGCGTGTGTGTCAGTACCTGTACAAGATAGATGATTGCGAGACACA
CAGCATGCGGAGCACAGAACTGATCGGC

Synonyms

Publications