rna5297, rna5297 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5297
Unique Name	rna5297
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2011
Alignment location	CM002465.1:650073..652313 -

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial intermediate peptidase
Orig transcript id	gnl\|cribi\|Naga_100005g90.6699.mrna
Orig protein id	gnl\|cribi\|Naga_100005g90.6699
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:650073..652313 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g90	gene5117	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25405.1	cds5284	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5297	rna5297-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:650073..652313-
coding sequence from alignment at CM002465.1:650073..652313-

mRNA sequence

>rna5297 ID=rna5297|Name=rna5297|organism=Nannochloropsis gaditana|type=mRNA|length=2011bp
GTAGACCTGAAATACCGGTACATACGTGAGAACAAAAAGAGACTTGAGAG
ATATGTAGGGACTGTGACTTCTATTGATCTTCCTCCACAGAGGAGGCGCA
TGAGCGAGCGACCAGAGAGAGGGGCGATGACACGCTACCCACAGCGAAAG
GGGGGGCAGGCGAGGCTGGAAGGAGTGCCTTTGAGTGAATTTATCGCTCG
CTGTGACATTTTGCTTCGTCCAGTGGGATTGAAGAGGGATTTCCAATTAG
TGGGGCCGATTACTCGATTTCTCTTAAACCGCCAAAATATCGGCAGAGAG
CTTGGTAGCGCACCCTGAGTGCCAGTGTCATCTTGAAGCGTTGCGTCCAC
CGTGCCCCAAGGGAATTGAGCTCGATGAATGGTATAGAATAATATCTCAC
GCTCATGCGCACAGGTGTTGTCATGGTCGACACGCCTACGACCACTCGCA
CTTCCTCCCTCCCGTCCTCCCCCCCTTCCTCCTCCCAACAAACCTCCCCG
GCACTACTTCCTCCTTCTCCTCCCCCCTCTGCCCACCGACCAGAGAATAC
GATCGTGATACCCGCAGATCCATTACAAACACCCGTAGCGCTATATTCTG
AGCATCATCCAGGGGCAAGTGTGGAGTCTGCCCGAGGGAAGCCAGGCGGG
GGTTGGGGCCTGGACACTGCAAGCAGCGGGGTCATGAAAGTCAACCAGGT
GGATGCTCGTGTGCTCGACACCGAGCTCCTCGACCTACTTCAAATCCAAT
TGTGCAGCATGTTTGCCCCGCCCTTTTTTGCCCCTGGCGTTGTGGACAAG
TACAAGCCCGAGCTCAAAGCATTGCTTGATTTCCTTCTCTTCCGATTCAC
CATCTTCCAAAACGAACCGACTCCCGGCATGCGCATGCAAAATCTCCGCT
TCGTGGATGGCCACGCAATCGGGACATCAGTCTCCTCCGCTGCCTCCTCA
GTCGATGCTCACGCTCCCCGGGTGAGCCAGCGCCTCCTCCTGGGATTTTT
GTGCATCGCGGGACAGTGGGGCTTCGCGAGGCTTCGACGGCACGCACTCG
TGGCGGGGTGGGCAGACGAGGTGCAGCACCCACAGCCTCTTATATCTCAC
ACATCGGACGCCCAGGCAAGAGGTCAAGGAGAGAGGAGCAGCGGCACTCG
AGGGGGAGGGCAGTGGAAGCGCCGGGCTTATCGCGCCCTCACCAGGGCCG
AAAGCCTTTTCCGCCTAGCATGGCTAATCAATTTTCTGGTTTTCTTGCGT
GTGGGCAGCTACCCCTCCCTACTGCAGCGCTTAGTGGGCATGCGCCTCGT
CTACGGCCCCTCCTCGGGGGGGGCTGCCCGGAACATCAATTTCCAGTTCA
TGAACCGGCAGCTGCTCTGGGAGCACTTCACGCAACTGGCGCTCTGTGTG
GTACCGCTCGTCGACTGGGACGGGCTGCGGCGACAGGTCTCCGGTCTGAT
CCGACAGAGGAGGGCAGGAGCCTGGGCCGCGGGGGCGGGGGCCGGGGGGG
GGAGCGAGTTCCGGGGGGCGGGGGGGGCGGACGGGGATATGGAGTGTGTT
GTTTGCGGGGAGGAGAGTGCGCAGACCCCTTATGTGACAGACTGTGGGCA
TATTTACTGCTACTACTGTTTGAAGACGGCATGTCTGCAGGATGACTCCT
TCTCGTGCCCCAGGTGCGGGACCTTCTTCGCCACGTCCAGGCGGTGGGTG
CCCGGGCATTAGGGGGTTGGAGGGTGGAGCCTCCGACGCGGAGGAGACCG
GTGTACAGATTGGAAATGGTGGCCATCGAGCAGTGAAATGTTGCCAGCTC
CTTGCCCTTGTGCGGGGTTTTGTACAAAGCTTGTTCTACAGAGAAAGCTT
TCATGGCTACTCATTCCGAAAAAGGAAAGCTTTAGGCGATAATCAACTTC
TTGAATCTCCGTGTTAACACGTAATTGTTCTATCGGGAAATCTTTCAGTC
CCTCCAACTATTCATACACTATTGCTCCACGCACATGTCTCCTCCACTCC
TGTAAATGCCA

protein sequence of rna5297

>rna5297-protein ID=rna5297-protein|Name=rna5297|organism=Nannochloropsis gaditana|type=polypeptide|length=746bp
MARASVYRRWRMLSVGNKYAPSIPTLGACFQYTLSPPARVWRRHHSIRAS
CVSKPFSTAAPFVIPATPGLFGVTGLRHPEDFLRLARESVSRCENLKHGL
LTGRVPAGVDVIRDMDAISNTLCIAIDAAELARNVHSEEAWREAAEEAFA
GLSGYIHELNTDVGLYQAVCSVVKDPHVAATLDEEGSRTAQLLKAEFESS
GIHLPDLERQEVRALLNEITSLETMFSNNLILGRRSFQVSKSDILAQIPS
EIVQNVILPHQPPGQPPHLLTLTTDTAVANAVLRYARDGNLRRRMYQEVN
TSPRENLEVLSRLIKSRDTLARKLGFPSYAHRFLADKMAKCPEEVDRFLR
ALAENVRAKAGKELEVLQRAKQEDEGGWGDSADFHSWDLSYYMGAVKSAR
HGASTDGKGVSAYLSLENCLRGLALLSQRLFGIELREVALDETEAWAPAE
SKLKKVVLLHPRHGQLGTIYLDLYPRQAKYTHHAQFTVRCGCLPAGASSY
QLPVVALVCNFSPCDPAGPVLLTHAELEALFHEFGHALHSLLSRTRFQHV
AGTRAPVDFVETPSHLLEYFVWDQRVLAQFAHHHQTGRPIPAELTAALRA
AKREFSGLDTQIQVLYSLVDQKLFGPQPLAEDPTTSAFLASVQEKVMQMP
HSEGAVWHARFGHLTGYGAGYYGYLYDRVFASHLWERLFVQDPWSREAGE
RLWKEMLVHGGGKDPCHILRDVLGEEPALDSFLAELEDEGEIEHRA

mRNA from alignment at CM002465.1:650073..652313-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5297 ID=rna5297|Name=rna5297|organism=Nannochloropsis gaditana|type=mRNA|length=2241bp|location=Sequence derived from alignment at CM002465.1:650073..652313- (Nannochloropsis gaditana)
ATGGCGCGGGCGAGTGTGTATCGAAGATGGAGAATGTTGTCAGTTGGGAA
CAAGTATGCGCCCAGCATCCCGACCCTTGGAGCGTGCTTTCAGTACACGC
TTTCACCACCAGCCAGAGTATGGCGTCGACATCACTCGATCAGGGCTTCC
TGCGTATCAAAGCCCTTTTCCACAGCCGCCCCGTTTGTGATCCCGGCAAC
ACCAGGCCTGTTTGGAGTGACAGGCCTTCGTCACCCAGAGGACTTTCTGC
GTCTGGCCCGGGAGTCTGTGAGCCGCTGCGAGAATTTGAAGCACGGCCTT
CTCACAGGGCGCGTCCCAGCGGGGGTTGATGTCATCCGCGACATGGACGC
AATTTCAAACACTCTTTGCATCGCGATCGATGCCGCGGAGCTTGCTCGAA
ATGTTCACTCCGAAGAAGCTTGGAGGGAAGCCGCTGAAGAGGCGTTCGCG
GGTTTGTCAGGCTATATTCACGAATTGAACACCGACGTTGGTTTGTATCA
AGCCGTGTGCTCAGTGGTGAAGGATCCTCATGTGGCTGCGACGTTAGATG
AGGAAGGAAGTCGGACAGCTCAGCTATTAAAGGCGGAGTTTGAGAGCAGT
GGCATTCACTTGCCCGATTTGGAGCGACAAGAAGTGCGGGCGCTTCTGAA
TGAAATCACCAGCTTGGAAACTATGTTCAGCAACAACCTCATTCTCGGCC
GTCGCTCATTCCAGGTCAGCAAATCTGATATCCTTGCGCAGATTCCTTCG
GAGATCGTGCAAAACGTGATACTTCCCCACCAGCCGCCGGGGCAGCCGCC
ACACCTCCTCACTCTCACCACGGATACAGCCGTCGCCAATGCCGTCCTGC
GGTACGCGCGGGACGGCAATTTGCGGCGGCGTATGTATCAGGAGGTAAAT
ACGAGTCCGCGAGAGAATTTGGAGGTGCTTTCGCGTCTCATCAAGTCGCG
CGACACTCTGGCCAGGAAGCTTGGGTTCCCAAGTTACGCCCATCGCTTCC
TAGCCGACAAGATGGCGAAATGCCCCGAGGAAGTGGACCGTTTCCTTCGT
GCCCTGGCCGAAAATGTCCGAGCCAAGGCGGGGAAAGAGTTAGAGGTCTT
GCAACGGGCAAAGCAGGAAGACGAAGGCGGTTGGGGGGACAGCGCGGATT
TTCACAGTTGGGACCTGTCTTACTATATGGGTGCTGTCAAGTCTGCCCGC
CACGGCGCCAGCACCGATGGAAAAGGTGTCTCCGCCTATCTGTCCCTCGA
GAACTGCCTACGAGGACTCGCTCTTCTCTCCCAGCGCCTGTTCGGGATAG
AGCTGCGGGAAGTAGCTCTCGACGAAACAGAGGCCTGGGCGCCCGCTGAG
TCGAAGTTGAAAAAAGTGGTCTTGCTCCACCCCCGGCACGGACAGCTCGG
AACCATCTATTTAGACCTCTATCCCCGCCAGGCTAAGTACACGCACCATG
CGCAGTTCACGGTCCGCTGTGGCTGTCTTCCCGCTGGGGCTTCCTCCTAC
CAGCTCCCCGTGGTGGCCCTGGTCTGCAATTTCTCTCCGTGCGACCCCGC
CGGGCCCGTCCTTCTCACGCATGCCGAATTGGAGGCGCTCTTCCATGAGT
TCGGGCACGCTCTCCACTCCTTACTCTCCCGCACGCGCTTTCAGCACGTG
GCGGGGACCAGGGCCCCCGTCGATTTCGTGGAAACCCCAAGCCACTTGCT
CGAGTATTTCGTCTGGGATCAGCGCGTGCTCGCCCAGTTCGCGCACCACC
ACCAGACGGGACGGCCCATCCCCGCCGAACTCACAGCTGCCTTGCGGGCA
GCAAAGAGGGAGTTCTCGGGGCTGGACACCCAGATCCAGGTCTTATACTC
CCTTGTCGATCAGAAGCTCTTCGGACCGCAGCCCCTGGCGGAGGACCCGA
CCACCTCGGCCTTCCTGGCCTCGGTGCAGGAGAAGGTGATGCAGATGCCG
CACTCGGAGGGGGCGGTCTGGCATGCTCGATTCGGGCATCTGACAGGGTA
CGGGGCGGGATACTACGGGTATCTGTACGATCGAGTCTTTGCCTCCCACT
TGTGGGAGAGGCTCTTTGTGCAAGACCCCTGGAGTAGAGAGGCGGGCGAG
CGCCTGTGGAAAGAGATGCTAGTGCACGGGGGTGGGAAGGATCCGTGTCA
TATACTCAGGGACGTGCTGGGGGAGGAACCAGCATTGGACAGTTTTCTCG
CGGAGCTAGAGGATGAAGGGGAAATAGAGCATAGGGCGTAG

Coding sequence (CDS) from alignment at CM002465.1:650073..652313-

>rna5297 ID=rna5297|Name=rna5297|organism=Nannochloropsis gaditana|type=CDS|length=2241bp|location=Sequence derived from alignment at CM002465.1:650073..652313- (Nannochloropsis gaditana)
ATGGCGCGGGCGAGTGTGTATCGAAGATGGAGAATGTTGTCAGTTGGGAA
CAAGTATGCGCCCAGCATCCCGACCCTTGGAGCGTGCTTTCAGTACACGC
TTTCACCACCAGCCAGAGTATGGCGTCGACATCACTCGATCAGGGCTTCC
TGCGTATCAAAGCCCTTTTCCACAGCCGCCCCGTTTGTGATCCCGGCAAC
ACCAGGCCTGTTTGGAGTGACAGGCCTTCGTCACCCAGAGGACTTTCTGC
GTCTGGCCCGGGAGTCTGTGAGCCGCTGCGAGAATTTGAAGCACGGCCTT
CTCACAGGGCGCGTCCCAGCGGGGGTTGATGTCATCCGCGACATGGACGC
AATTTCAAACACTCTTTGCATCGCGATCGATGCCGCGGAGCTTGCTCGAA
ATGTTCACTCCGAAGAAGCTTGGAGGGAAGCCGCTGAAGAGGCGTTCGCG
GGTTTGTCAGGCTATATTCACGAATTGAACACCGACGTTGGTTTGTATCA
AGCCGTGTGCTCAGTGGTGAAGGATCCTCATGTGGCTGCGACGTTAGATG
AGGAAGGAAGTCGGACAGCTCAGCTATTAAAGGCGGAGTTTGAGAGCAGT
GGCATTCACTTGCCCGATTTGGAGCGACAAGAAGTGCGGGCGCTTCTGAA
TGAAATCACCAGCTTGGAAACTATGTTCAGCAACAACCTCATTCTCGGCC
GTCGCTCATTCCAGGTCAGCAAATCTGATATCCTTGCGCAGATTCCTTCG
GAGATCGTGCAAAACGTGATACTTCCCCACCAGCCGCCGGGGCAGCCGCC
ACACCTCCTCACTCTCACCACGGATACAGCCGTCGCCAATGCCGTCCTGC
GGTACGCGCGGGACGGCAATTTGCGGCGGCGTATGTATCAGGAGGTAAAT
ACGAGTCCGCGAGAGAATTTGGAGGTGCTTTCGCGTCTCATCAAGTCGCG
CGACACTCTGGCCAGGAAGCTTGGGTTCCCAAGTTACGCCCATCGCTTCC
TAGCCGACAAGATGGCGAAATGCCCCGAGGAAGTGGACCGTTTCCTTCGT
GCCCTGGCCGAAAATGTCCGAGCCAAGGCGGGGAAAGAGTTAGAGGTCTT
GCAACGGGCAAAGCAGGAAGACGAAGGCGGTTGGGGGGACAGCGCGGATT
TTCACAGTTGGGACCTGTCTTACTATATGGGTGCTGTCAAGTCTGCCCGC
CACGGCGCCAGCACCGATGGAAAAGGTGTCTCCGCCTATCTGTCCCTCGA
GAACTGCCTACGAGGACTCGCTCTTCTCTCCCAGCGCCTGTTCGGGATAG
AGCTGCGGGAAGTAGCTCTCGACGAAACAGAGGCCTGGGCGCCCGCTGAG
TCGAAGTTGAAAAAAGTGGTCTTGCTCCACCCCCGGCACGGACAGCTCGG
AACCATCTATTTAGACCTCTATCCCCGCCAGGCTAAGTACACGCACCATG
CGCAGTTCACGGTCCGCTGTGGCTGTCTTCCCGCTGGGGCTTCCTCCTAC
CAGCTCCCCGTGGTGGCCCTGGTCTGCAATTTCTCTCCGTGCGACCCCGC
CGGGCCCGTCCTTCTCACGCATGCCGAATTGGAGGCGCTCTTCCATGAGT
TCGGGCACGCTCTCCACTCCTTACTCTCCCGCACGCGCTTTCAGCACGTG
GCGGGGACCAGGGCCCCCGTCGATTTCGTGGAAACCCCAAGCCACTTGCT
CGAGTATTTCGTCTGGGATCAGCGCGTGCTCGCCCAGTTCGCGCACCACC
ACCAGACGGGACGGCCCATCCCCGCCGAACTCACAGCTGCCTTGCGGGCA
GCAAAGAGGGAGTTCTCGGGGCTGGACACCCAGATCCAGGTCTTATACTC
CCTTGTCGATCAGAAGCTCTTCGGACCGCAGCCCCTGGCGGAGGACCCGA
CCACCTCGGCCTTCCTGGCCTCGGTGCAGGAGAAGGTGATGCAGATGCCG
CACTCGGAGGGGGCGGTCTGGCATGCTCGATTCGGGCATCTGACAGGGTA
CGGGGCGGGATACTACGGGTATCTGTACGATCGAGTCTTTGCCTCCCACT
TGTGGGAGAGGCTCTTTGTGCAAGACCCCTGGAGTAGAGAGGCGGGCGAG
CGCCTGTGGAAAGAGATGCTAGTGCACGGGGGTGGGAAGGATCCGTGTCA
TATACTCAGGGACGTGCTGGGGGAGGAACCAGCATTGGACAGTTTTCTCG
CGGAGCTAGAGGATGAAGGGGAAATAGAGCATAGGGCGTAG

Synonyms

Publications