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Properties
| Property Name | Value |
|---|
| Product | ring zinc finger-containing protein |
| Orig transcript id | gnl|cribi|Naga_100005g89.6718.mrna |
| Orig protein id | gnl|cribi|Naga_100005g89.6718 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:648033..650043 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5296 ID=rna5296|Name=rna5296|organism=Nannochloropsis gaditana|type=mRNA|length=1815bp
ATGCCACACGCAGTCAAAGCCCTTTGTCGTGCGGCGCGGCAAGGAGATGT
AGCGCGCACCGTGTTAATTCTGGAACAATTTCCCGAAACACTGAACGAAC
GAAATCCAGACGGTCGCACTGCACTGATTGTTGCGGTTCGGCACGGCCAA
TTGGCAATAGTAGAGCTCTTGCTCAGGCGCGGCGCTAAAGTTAACAGGGC
ATCGCACCGCTCAGGAGCTACGCCTGTGTGGCACTGTGCGTGGAAGGGCG
AGGAAGCGATCTTGCGTCTCCTGCTAAAGCACGGGGCAGACCCCAGCACG
GAAGCCACGGACTGTGGAACCCCTCTCATGGTGGCCAGCCAGTACGGCCA
CCTCGAGTGCGCGCGCGTCCTCCTCGACCAAGGCCCGTGTGCAGCCAAAC
GGGTGGCCCCCCAGGCTGCCTCGGATGCCTCCTCGGTCCTGAAGCCCCCC
GCTCAGGCCCGGGCAGCCCCAGCCTCTCGCCCCCACCCTCCCTGGACCCT
GGATATCGACTACGCGCAGAGCAACTACAAATGCACGGCCCTATGGTGGG
CTTGTCGCTCGGATCGTGAAGACGTGGTGCGGCTCCTGCTCTCGCGCGGG
GCCGACTTCACACTGCGGGACTGGAAGGGGCGGACGCCTTTGGAGATCGC
GCTCGCCAAAAACCACCCCGGCTGCGTCCTGGCCGTACAGGAAGCGTACC
GGGCCTTGGCCCTCTTCAAATACCGGACCCTGCACGACGCCGAGCAATGC
CTGCTGCGGCTGCCACTGTCCCGCACGCGGGGGTCCACCCTGCAGACGCG
CGTCTCATGCGTCCCTGCCTGCCTCCGGGCGCGCCTCTTCCGGCCTCCTC
GGCGGACGCAGTACGAGGATCTGGAGCAACGTGAGCAGCAAGAACTGCAG
CTGTTCATGCAGCATATGCAGCATCGACCGCCCCGACCTGAGCAGCCTCC
GACAGGAAAGGAGGAGGATCAACCGCAAAAGGCGGTGGAGGGACAGGTGG
AGACGAGGAGGGACAGTGATCCAAAGGGCGTTGATAGAGGGGAACACCCG
CAAGAAAAGAAGGAAGGAATAATTTGGGGCGGGGCGGGGGGGGGAGGGGG
GGGCAGTGGGTTCCCCTGGGTGGATGTGAAGGCGCTTCGCCAGGACAGAA
GAATAGTCGGCGGTAGAGAGCTAGTCGAGGACCAGGAAAGTGGATTAGGG
AGGAGGAGTTACAGTGACGCGGAAGGTAGGGACAGTATGGAGCGGATGCC
AAGCTCTAAGCGCCCTGAGAGGGGAAAGAAGCGGAGTCGCCGGGCGGTCG
ATGGGCAGCACCAGGCTCGTGGCCACCACGCATATGGCCTGACGAGCGAT
GAGGTCGCGCGATTTGAGGAAAACTTAGGCGAGCACAATGTGGCAATTGG
TAACTCGAGTGCTTTGCTAGTCTCCTCTCATCCTGCTCCTTACTCCTCCT
GCCCGTTCACCTCCTCCCCCTCCTCCTCCTCGTCTTCCTGTTCCTCTTCC
TCCTCCTCGTCTTCTTCCTCTGTGCATGACGTCTCCTCCTCCTCGCTTGA
GGATGCCACACCCTCTGACCTGGCATATCGCAATCCAATCGTGCGAAAGC
GTGGAGTGTCATGGAAAGAAAAACGCCAACAAGGGCTTCAAAGCAGGCGA
GGCAAGAGAAAGCGGGGGTTGTCCATCCCGACGGCTGAGTCGCGCGTGGA
AAGAGGAAGGCACGAGCGGGCCTTCGTGGAGGAAATAACCATCATGGTGT
CAAAATTTGTGCTTGAGGACATGCCGGAGCAGTTATTCATTGAGCTGATG
GCATTGATGCGGTGA back to topprotein sequence of rna5296 >rna5296-protein ID=rna5296-protein|Name=rna5296|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MRTGVVMVDTPTTTRTSSLPSSPPSSSQQTSPALLPPSPPPSAHRPENTI
VIPADPLQTPVALYSEHHPGASVESARGKPGGGWGLDTASSGVMKVNQVD
ARVLDTELLDLLQIQLCSMFAPPFFAPGVVDKYKPELKALLDFLLFRFTI
FQNEPTPGMRMQNLRFVDGHAIGTSVSSAASSVDAHAPRVSQRLLLGFLC
IAGQWGFARLRRHALVAGWADEVQHPQPLISHTSDAQARGQGERSSGTRG
GGQWKRRAYRALTRAESLFRLAWLINFLVFLRVGSYPSLLQRLVGMRLVY
GPSSGGAARNINFQFMNRQLLWEHFTQLALCVVPLVDWDGLRRQVSGLIR
QRRAGAWAAGAGAGGGSEFRGAGGADGDMECVVCGEESAQTPYVTDCGHI
YCYYCLKTACLQDDSFSCPRCGTFFATSRRWVPGH back to topmRNA from alignment at CM002465.1:648033..650043+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5296 ID=rna5296|Name=rna5296|organism=Nannochloropsis gaditana|type=mRNA|length=2011bp|location=Sequence derived from alignment at CM002465.1:648033..650043+ (Nannochloropsis gaditana)
GTAGACCTGAAATACCGGTACATACGTGAGAACAAAAAGAGACTTGAGAG
ATATGTAGGGACTGTGACTTCTATTGATCTTCCTCCACAGAGGAGGCGCA
TGAGCGAGCGaccagagagaggggcgatGACACGCTACCCACAgcgaaag
ggggggcaggcgaggCTGGAAGGAGTGCCTTTGAGTGAATTTATCGCTCG
CTGTGACATTTTGCTTCGTCCAGTGGGATTGAAGAGGGATTTCCAATTAG
TGGGGCCGATTACTCGATTTCTCTTAAACCGCCAAAATATCGGCAGAGAG
CTTGGTAGCGCACCCTGAGTGCCAGTGTCATCTTGAAGCGTTGCGTCCAC
CGTGCCCCAAGGGAATTGAGCTCGATGAATGGTATAGAATAATATCTCAC
GCTCATGCGCACAGGTGTTGTCATGGTCGACACGCCTACGACCACtcgca
cttcctccctcccgtcctcccccccttcctcctcccaacaAACCTCCCCG
GCactacttcctccttctcctcccccctctgcccaCCGACCAGAGAATAC
GATCGTGATACCCGCAGATCCATTACAAACACCCGTAGCGCTATATTCTG
AGCATCATCCAGGGGCAAGTGTGGAGTCTGCCCGAGGGAAGCCAGGCGGG
GGTTGGGGCCTGGACACTGCAAGCAGCGGGGTCATGAAAGTCAACCAGGT
GGATGCTCGTGTGCTCGACACCGAGCTCCTCGACCTACTTCAAATCCAAT
TGTGCAGCATGTTTGCCCCGCCCTTTTTTGCCCCTGGCGTTGTGGACAAG
TACAAGCCCGAGCTCAAAGCATTGCTTgatttccttctcttccgaTTCAC
CATCTTCCAAAACGAACCGACTCCCGGCATGCGCATGCAAAATCTCCGCT
TCGTGGATGGCCACGCAATCGGGACATCAGtctcctccgctgcctcctca
gTCGATGCTCACGCTCCCCGGGTgagccagcgcctcctcctgggatTTTT
GTGCATCGCGGGACAGTGGGGCTTCGCGAGGCTTCGACGGCACGCACTCG
TGGCGGGGTGGGCAGACGAGGTGCAGCACCCACAGCCTCTTATATCTCAC
ACATCGGACGCCCAGGCAAGAGgtcaaggagagaggagcagcggcactcg
agggggagggcagtggaAGCGCCGGGCTTATCGCGCCCTCACCAGGGCCG
AAAGCCTTTTCCGCCTAGCATGGCTAATCAATTTTCTGGTTTTCTTGCGT
GTGGGCAGCTACCCCTCCCTACTGCAGCGCTTAGTGGGCATGCGCCTCGT
CTACGGCCCCTCCTCGGGGGGGGCTGCCCGGAACATCAATTTCCAGTTCA
TGAACCGGCAGCTGCTCTGGGAGCACTTCACGCAACTGGCGCTCTGTGTG
GTACCGCTCGTCGACTGGGACGGGCTGCGGCGACAGGTCTCCGGTCTGAT
CCGAcagaggagggcaggagcctgggccgcgggggcgggggccggggggg
ggagcgagttccggggggcggggggggcggacggggatATGGAGTGTGTT
GtttgcggggaggagagtgcGCAGACCCCTTATGTGACAGACTGTGGGCA
TATTTACTGCTACTACTGTTTGAAGACGGCATGTCTGCAGGATGACTCCT
TCTCGTGCCCCAGGTGCGGGACCTTCTTCGCCACGTCCAGGCGGTGGGTG
CCCGGGCATTagggggttggagggtgGAGCCTCCGACGCGGAGGAGACCG
GTGTACAGATTGGAAATGGTGGCCATCGAGCAGTGAAATGTTGCCagctc
cttgcccttgtGCGGGGTTTTGTACAAAGCTTGTTCTACAGAGAAAGCTT
TCATGGCTACTCATTCcgaaaaaggaaagcttTAGGCGATAATCAACTTC
TTGAATCTCCGTGTTAACACGTAATTGTTCTATCGGGAAATCTTTCAGTC
CCTCCAACTATTCATACACTATTGCTCCACGCACAtgtctcctccactcc
tgTAAATGCCA back to topCoding sequence (CDS) from alignment at CM002465.1:648033..650043+ >rna5296 ID=rna5296|Name=rna5296|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002465.1:648033..650043+ (Nannochloropsis gaditana)
ATGCGCACAGGTGTTGTCATGGTCGACACGCCTACGACCACtcgcacttc
ctccctcccgtcctcccccccttcctcctcccaacaAACCTCCCCGGCac
tacttcctccttctcctcccccctctgcccaCCGACCAGAGAATACGATC
GTGATACCCGCAGATCCATTACAAACACCCGTAGCGCTATATTCTGAGCA
TCATCCAGGGGCAAGTGTGGAGTCTGCCCGAGGGAAGCCAGGCGGGGGTT
GGGGCCTGGACACTGCAAGCAGCGGGGTCATGAAAGTCAACCAGGTGGAT
GCTCGTGTGCTCGACACCGAGCTCCTCGACCTACTTCAAATCCAATTGTG
CAGCATGTTTGCCCCGCCCTTTTTTGCCCCTGGCGTTGTGGACAAGTACA
AGCCCGAGCTCAAAGCATTGCTTgatttccttctcttccgaTTCACCATC
TTCCAAAACGAACCGACTCCCGGCATGCGCATGCAAAATCTCCGCTTCGT
GGATGGCCACGCAATCGGGACATCAGtctcctccgctgcctcctcagTCG
ATGCTCACGCTCCCCGGGTgagccagcgcctcctcctgggatTTTTGTGC
ATCGCGGGACAGTGGGGCTTCGCGAGGCTTCGACGGCACGCACTCGTGGC
GGGGTGGGCAGACGAGGTGCAGCACCCACAGCCTCTTATATCTCACACAT
CGGACGCCCAGGCAAGAGgtcaaggagagaggagcagcggcactcgaggg
ggagggcagtggaAGCGCCGGGCTTATCGCGCCCTCACCAGGGCCGAAAG
CCTTTTCCGCCTAGCATGGCTAATCAATTTTCTGGTTTTCTTGCGTGTGG
GCAGCTACCCCTCCCTACTGCAGCGCTTAGTGGGCATGCGCCTCGTCTAC
GGCCCCTCCTCGGGGGGGGCTGCCCGGAACATCAATTTCCAGTTCATGAA
CCGGCAGCTGCTCTGGGAGCACTTCACGCAACTGGCGCTCTGTGTGGTAC
CGCTCGTCGACTGGGACGGGCTGCGGCGACAGGTCTCCGGTCTGATCCGA
cagaggagggcaggagcctgggccgcgggggcgggggccgggggggggag
cgagttccggggggcggggggggcggacggggatATGGAGTGTGTTGttt
gcggggaggagagtgcGCAGACCCCTTATGTGACAGACTGTGGGCATATT
TACTGCTACTACTGTTTGAAGACGGCATGTCTGCAGGATGACTCCTTCTC
GTGCCCCAGGTGCGGGACCTTCTTCGCCACGTCCAGGCGGTGGGTGCCCG
GGCATTag back to top
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