rna5295, rna5295 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5295
Unique Name	rna5295
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1495
Alignment location	CM002465.1:646052..647866 -

Link to JBrowse

Properties


Property Name	Value
Product	ankyrin unc44
Orig transcript id	gnl\|cribi\|Naga_100005g88.6671.mrna
Orig protein id	gnl\|cribi\|Naga_100005g88.6671
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:646052..647866 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g88	gene5115	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25377.1	cds5282	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5295	rna5295-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:646052..647866-
coding sequence from alignment at CM002465.1:646052..647866-

mRNA sequence

>rna5295 ID=rna5295|Name=rna5295|organism=Nannochloropsis gaditana|type=mRNA|length=1495bp
ATGTTCTTAAAAATAAATCTTCTGTGCGCCTTGACTTGTATAAAGGTTGT
GATTTGGCAGCGTACAGCAATGACATGGCCTACGACAGAGAATGTGCGCC
GTAGGAGCTTGCTTCTCCTGTTAATCGCCTTACTCGCAGCGATGATTGTG
AAAGCAAATGATAAAGCAAGACCATTTACCCGCCTTCAGTCAACAACGGG
CAATGTTGTGGATACCCATGGACAGCAACTTGACCATAACGAGCAACAAA
GGAATCAAGAGACACTTGATGATCGGAACGGAAAGGAAAGACAGCAAGCC
AAGAGAAAGAGACGACTGCAGCAAGCAGCAAGCGGTTTTGATCAGCCATT
GCGGCCCAATGACAAGGTGGCTTTCCTGCAAAAAATAGCGAAAGGCAATG
TGGATCCTTTAGAGCTTTTCACCCGGGGGGTGAAAAGCAAAGCTTTTCAG
GCCGTATTAAAAAATGTTGAGATCCAACATCGCATTTTGAAAGAGATGCC
GCTCCTTGCTGCCTTCGACGGTTTCCGTCAGATTACTGGTCGGCGACTAA
GCGCAAGAGAGACAATGGAGGGCTTCGCGATCGGGGTGCAGAACGTGATT
GATTTTGCCAAAGTTGCTTTCATCAAGGTGAAAGACCCTCAGCAAACAGC
CGCAACAATAGCAAAGATGGCTGCAGATCCCAACCCTGCCATTCAAAGCT
TGTTTCGCCGGGCCCAGGAGGGGGATCCTGCAGCGGTGGAAGAGCTGCAG
GACGTGTTTAATGACCTACACTTTCCAGGTGTTGATATGCGTGTTCTCCG
GGAAGTCAGGCGGAACCATACCTTCGAAAAGTTGTTGTCAATGCCAGAAA
TCATGCGCTTCATCGACCGGAACGAATTCGCGTCAAACTTCTTCCGCTCC
GACATCAAAGAAACATTTTTAAAACAGGATCCAAGGATAATTGGAACAAA
TGCAAATGGAATTCAAATAGACACGGCGGCGACCGTAGGCTCCGACGTTG
TGAATGTAGCAGGAGGGACAGCGGAAAAAGCCACAAAGGGTATTGTACCT
TGATTTCGCATGCCCTTTATGACAAGTTACAGCCCTCGATCATGGACACG
TTAAGAAGTCTGTACTCAAGGAGATAAGATCCAGGAGAAAATATTGAAAT
AGAAAGGGATAAAGGAAAGCAATCAGACATAAAAAGGATGACCGATAAGA
CATCAGCAAGGAATCTACCCGGGATTCTTGAAATTGCGAGCGAGTAAAAA
TCCTTCAAGTGAGTTATACATTTTGTTTTAATCGACGGCCATCTTTGGAA
ATATTATAGCAGTACTATGCACGCTCATTCCTGTCGACCATGGTCGTCGG
CTTTGCTCCTTGTACATAACGCCTACCCAGATACCTGGCCATACCTGGAG
TCGCCCAAAACACGACACCTCAGCAAACATTGAATTCCGCTCCAGCATAT
AAAACATATAATATGAGTTCCAGAAAAGTACCACGCTGCCGCAGG

protein sequence of rna5295

>rna5295-protein ID=rna5295-protein|Name=rna5295|organism=Nannochloropsis gaditana|type=polypeptide|length=604bp
MPHAVKALCRAARQGDVARTVLILEQFPETLNERNPDGRTALIVAVRHGQ
LAIVELLLRRGAKVNRASHRSGATPVWHCAWKGEEAILRLLLKHGADPST
EATDCGTPLMVASQYGHLECARVLLDQGPCAAKRVAPQAASDASSVLKPP
AQARAAPASRPHPPWTLDIDYAQSNYKCTALWWACRSDREDVVRLLLSRG
ADFTLRDWKGRTPLEIALAKNHPGCVLAVQEAYRALALFKYRTLHDAEQC
LLRLPLSRTRGSTLQTRVSCVPACLRARLFRPPRRTQYEDLEQREQQELQ
LFMQHMQHRPPRPEQPPTGKEEDQPQKAVEGQVETRRDSDPKGVDRGEHP
QEKKEGIIWGGAGGGGGGSGFPWVDVKALRQDRRIVGGRELVEDQESGLG
RRSYSDAEGRDSMERMPSSKRPERGKKRSRRAVDGQHQARGHHAYGLTSD
EVARFEENLGEHNVAIGNSSALLVSSHPAPYSSCPFTSSPSSSSSSCSSS
SSSSSSSVHDVSSSSLEDATPSDLAYRNPIVRKRGVSWKEKRQQGLQSRR
GKRKRGLSIPTAESRVERGRHERAFVEEITIMVSKFVLEDMPEQLFIELM
ALMR

mRNA from alignment at CM002465.1:646052..647866-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5295 ID=rna5295|Name=rna5295|organism=Nannochloropsis gaditana|type=mRNA|length=1815bp|location=Sequence derived from alignment at CM002465.1:646052..647866- (Nannochloropsis gaditana)
ATGCCACACGCAGTCAAAGCCCTTTGTCGTGCGGCGCGGCAAGGAGATGT
AGCGCGCACCGTGTTAATTCTGGAACAATTTCCCGAAACACTGAACGAAC
GAAATCCAGACGGTCGCACTGCACTGATTGTTGCGGTTCGGCACGGCCAA
TTGGCAATAGTAGAGCTCTTGCTCAGGCGCGGCGCTAAAGTTAACAGGGC
ATCGCACCGCTCAGGAGCTACGCCTGTGTGGCACTGTGCGTGGAAGGGCG
AGGAAGCGATCTTGCGTCTCCTGCTAAAGCACGGGGCAGACCCCAGCACG
GAAGCCACGGACTGTGGAACCCCTCTCATGGTGGCCAGCCAGTACGGCCA
CCTCGAGTGCGCGCGCGTCCTCCTCGACCAAGGCCCGTGTGCAGCCAAAC
GGGTGGCCCCCCAGGCTGCCTCGGATGCCTCCTCGGTCCTGAAGCCCCCC
GCTCAGGCCCGGGCAGCCCCAGCCTCTCGCCCCCACCCTCCCTGGACCCT
GGATATCGACTACGCGCAGAGCAACTACAAATGCACGGCCCTATGGTGGG
CTTGTCGCTCGGATCGTGAAGACGTGGTGCGGCTCCTGCTCTCGCGCGGG
GCCGACTTCACACTGCGGGACTGGAAGGGGCGGACGCCTTTGGAGATCGC
GCTCGCCAAAAACCACCCCGGCTGCGTCCTGGCCGTACAGGAAGCGTACC
GGGCCTTGGCCCTCTTCAAATACCGGACCCTGCACGACGCCGAGCAATGC
CTGCTGCGGCTGCCACTGTCCCGCACGCGGGGGTCCACCCTGCAGACGCG
CGTCTCATGCGTCCCTGCCTGCCTCCGGGCGCGCCTCTTCCGGCCTCCTC
GGCGGACGCAGTACGAGGATCTGGAGCAACGTGAGCAGCAAGAACTGCAG
CTGTTCATGCAGCATATGCAGCATCGACCGCCCCGACCTGAGCAGCCTCC
GACAGGAAAGGAGGAGGATCAACCGCAAAAGGCGGTGGAGGGACAGGTGG
AGACGAGGAGGGACAGTGATCCAAAGGGCGTTGATAGAGGGGAACACCCG
CAAGAAAAGAAGGAAGGAATAATTTGGGGCGGGGCGGGGGGGGGAGGGGG
GGGCAGTGGGTTCCCCTGGGTGGATGTGAAGGCGCTTCGCCAGGACAGAA
GAATAGTCGGCGGTAGAGAGCTAGTCGAGGACCAGGAAAGTGGATTAGGG
AGGAGGAGTTACAGTGACGCGGAAGGTAGGGACAGTATGGAGCGGATGCC
AAGCTCTAAGCGCCCTGAGAGGGGAAAGAAGCGGAGTCGCCGGGCGGTCG
ATGGGCAGCACCAGGCTCGTGGCCACCACGCATATGGCCTGACGAGCGAT
GAGGTCGCGCGATTTGAGGAAAACTTAGGCGAGCACAATGTGGCAATTGG
TAACTCGAGTGCTTTGCTAGTCTCCTCTCATCCTGCTCCTTACTCCTCCT
GCCCGTTCACCTCCTCCCCCTCCTCCTCCTCGTCTTCCTGTTCCTCTTCC
TCCTCCTCGTCTTCTTCCTCTGTGCATGACGTCTCCTCCTCCTCGCTTGA
GGATGCCACACCCTCTGACCTGGCATATCGCAATCCAATCGTGCGAAAGC
GTGGAGTGTCATGGAAAGAAAAACGCCAACAAGGGCTTCAAAGCAGGCGA
GGCAAGAGAAAGCGGGGGTTGTCCATCCCGACGGCTGAGTCGCGCGTGGA
AAGAGGAAGGCACGAGCGGGCCTTCGTGGAGGAAATAACCATCATGGTGT
CAAAATTTGTGCTTGAGGACATGCCGGAGCAGTTATTCATTGAGCTGATG
GCATTGATGCGGTGA

Coding sequence (CDS) from alignment at CM002465.1:646052..647866-

>rna5295 ID=rna5295|Name=rna5295|organism=Nannochloropsis gaditana|type=CDS|length=1815bp|location=Sequence derived from alignment at CM002465.1:646052..647866- (Nannochloropsis gaditana)
ATGCCACACGCAGTCAAAGCCCTTTGTCGTGCGGCGCGGCAAGGAGATGT
AGCGCGCACCGTGTTAATTCTGGAACAATTTCCCGAAACACTGAACGAAC
GAAATCCAGACGGTCGCACTGCACTGATTGTTGCGGTTCGGCACGGCCAA
TTGGCAATAGTAGAGCTCTTGCTCAGGCGCGGCGCTAAAGTTAACAGGGC
ATCGCACCGCTCAGGAGCTACGCCTGTGTGGCACTGTGCGTGGAAGGGCG
AGGAAGCGATCTTGCGTCTCCTGCTAAAGCACGGGGCAGACCCCAGCACG
GAAGCCACGGACTGTGGAACCCCTCTCATGGTGGCCAGCCAGTACGGCCA
CCTCGAGTGCGCGCGCGTCCTCCTCGACCAAGGCCCGTGTGCAGCCAAAC
GGGTGGCCCCCCAGGCTGCCTCGGATGCCTCCTCGGTCCTGAAGCCCCCC
GCTCAGGCCCGGGCAGCCCCAGCCTCTCGCCCCCACCCTCCCTGGACCCT
GGATATCGACTACGCGCAGAGCAACTACAAATGCACGGCCCTATGGTGGG
CTTGTCGCTCGGATCGTGAAGACGTGGTGCGGCTCCTGCTCTCGCGCGGG
GCCGACTTCACACTGCGGGACTGGAAGGGGCGGACGCCTTTGGAGATCGC
GCTCGCCAAAAACCACCCCGGCTGCGTCCTGGCCGTACAGGAAGCGTACC
GGGCCTTGGCCCTCTTCAAATACCGGACCCTGCACGACGCCGAGCAATGC
CTGCTGCGGCTGCCACTGTCCCGCACGCGGGGGTCCACCCTGCAGACGCG
CGTCTCATGCGTCCCTGCCTGCCTCCGGGCGCGCCTCTTCCGGCCTCCTC
GGCGGACGCAGTACGAGGATCTGGAGCAACGTGAGCAGCAAGAACTGCAG
CTGTTCATGCAGCATATGCAGCATCGACCGCCCCGACCTGAGCAGCCTCC
GACAGGAAAGGAGGAGGATCAACCGCAAAAGGCGGTGGAGGGACAGGTGG
AGACGAGGAGGGACAGTGATCCAAAGGGCGTTGATAGAGGGGAACACCCG
CAAGAAAAGAAGGAAGGAATAATTTGGGGCGGGGCGGGGGGGGGAGGGGG
GGGCAGTGGGTTCCCCTGGGTGGATGTGAAGGCGCTTCGCCAGGACAGAA
GAATAGTCGGCGGTAGAGAGCTAGTCGAGGACCAGGAAAGTGGATTAGGG
AGGAGGAGTTACAGTGACGCGGAAGGTAGGGACAGTATGGAGCGGATGCC
AAGCTCTAAGCGCCCTGAGAGGGGAAAGAAGCGGAGTCGCCGGGCGGTCG
ATGGGCAGCACCAGGCTCGTGGCCACCACGCATATGGCCTGACGAGCGAT
GAGGTCGCGCGATTTGAGGAAAACTTAGGCGAGCACAATGTGGCAATTGG
TAACTCGAGTGCTTTGCTAGTCTCCTCTCATCCTGCTCCTTACTCCTCCT
GCCCGTTCACCTCCTCCCCCTCCTCCTCCTCGTCTTCCTGTTCCTCTTCC
TCCTCCTCGTCTTCTTCCTCTGTGCATGACGTCTCCTCCTCCTCGCTTGA
GGATGCCACACCCTCTGACCTGGCATATCGCAATCCAATCGTGCGAAAGC
GTGGAGTGTCATGGAAAGAAAAACGCCAACAAGGGCTTCAAAGCAGGCGA
GGCAAGAGAAAGCGGGGGTTGTCCATCCCGACGGCTGAGTCGCGCGTGGA
AAGAGGAAGGCACGAGCGGGCCTTCGTGGAGGAAATAACCATCATGGTGT
CAAAATTTGTGCTTGAGGACATGCCGGAGCAGTTATTCATTGAGCTGATG
GCATTGATGCGGTGA

Synonyms

Publications