rna5291, rna5291 (mRNA) Nannochloropsis gaditana

Overview
Namerna5291
Unique Namerna5291
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1077
Alignment locationCM002465.1:633555..635519 -

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Properties
Property NameValue
Productisoform a
Orig transcript idgnl|cribi|Naga_100005g84.6741.mrna
Orig protein idgnl|cribi|Naga_100005g84.6741
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:633555..635519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g84gene5111Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25447.1cds5278Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5291rna5291-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5291 ID=rna5291|Name=rna5291|organism=Nannochloropsis gaditana|type=mRNA|length=1077bp
AGCCTCACACTCCAACGCTATCTTCACAGATCACCCATGCGACCATCAAT
TTTTTTCACACTGGGTGTGGCCGTATGCTGCTGCTTCCTCTCGACCGTGA
CTAGAGCGTACAGGGCGCCGTCCTTCGCTGCGGAGCCTTCGCGTGCCAGC
AAATGGATGCTCGGAAGCCGCTCAGCAGGCATCGCCCTGGCGCCCACGAT
TAAACCCGCTGCATCTTCCTCACGTGGTGGTCGCGGAGGAGCAGGCTCGT
TGGTGATGATGCCCATCGGTGTGCCAAAGGTGGCGTACAGGGTACCAGGC
TCAGGAAGCGCGGACTGGGTAGACATCTACAATCGGTTATACAGGGAGCG
CATAATTTTCTTAGGACAGGAAATAGATGATGACTATGCCAACCAAATCA
TAGGTGTGCTCTTGTATCTGGATCAGGAGGATAGCTCCCGGCCCATCTAT
ATGTACATCAACTGCCCGGGGGGCTCGGTGATCGCGGGCTTGGCCATCTA
CGACGTGATGCAGCTCATCCGCTCAGAGATAGTCACGATCAACATTGGGA
TGGCCGCGTCCATGGCTTCCTTTCTGCTGGCAGCAGGGAAGAAGGGCAAA
CGTCTCGCCCTCCCCCACTCGCGCGTGATGATCCATCAGCCCATGGGGGG
CGCCCAGGGTCAGGCGGAAGATATCAAGGTGGAGGCGGCTCAGATCTTAC
GGATCAAAAAGAACCTGGTGGGCATGTACAGCAAAATGACGGGAAGGGCC
ACGGAGCAGATCGTGATGGATTTGGACAGAGACAATTACCTGTCGGCGCA
GGAGGCGCTAGAGCACGGTTTGATCGACGAGATCGTGGAGCTAGAGAAGG
CGATGGAGCCAGAGAGCCCCAACGCTCAGCTAGACCCCGTCAGGGCCTTC
GCGGGGGTGGGGAAGGATGACGATCCGCTGAAATACTTGCCCTGAGTGCA
CGTCACGGCGGAGAGAGGGACGGGAGTCACGGCGGCACCAGGGAAGGGGT
CTTCCAGAGGGTGCGAGGCCGTGCGAGGTCCTTTTCGATAAGAAACCAGT
TGCTGAGGCAATGTGCGTAATTTTGCG
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protein sequence of rna5291

>rna5291-protein ID=rna5291-protein|Name=rna5291|organism=Nannochloropsis gaditana|type=polypeptide|length=525bp
MEAPFLAPESSGSSQDWNVASQETVIQRHPWRIHGSRYFQLILLCILILN
NAVVWVAFSAITPATAAVYGVSPGLVNIVALSFQMLFLPGTIAGYMLKER
WGLRLTLLAGAFMTAVSAAIRFVSLYVPPVSFRNASTDGHDVNNGGCAYA
LLLLGTSLAALAQPLLLNTPPDLAVHWFAVKERDLVTSLAFMCSPLGSAL
GVTLAPLFVSEAGADTEEDISGNHRNDARGGLRLFLLAQLGMGVATTLLA
HAGATDRPPTPPSRAAALGSQREEERVDSSDALGSRVLSMPLAWQLVVPD
LRRCLLCNPSFLLLLFCFGIGLGFFNALLTLLGQLLAPCGYPEAEAGALG
GIFLGTGLVGAVMAGLLMDASHRYGLLLKGGFLGAWAASLFLVFTLRPDN
FLVLALCFGLLGFTMLPLLPVAIENGVEITYPDVPEFFSSGLLLSAGNLT
GIPLAFLFAWTIDSYEGSCRKLWKPAAVLVVVVTTACALPVLGYRPRAFG
RWEAEKEQRREGLEGCGHDVATRDA
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mRNA from alignment at CM002465.1:633555..635519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5291 ID=rna5291|Name=rna5291|organism=Nannochloropsis gaditana|type=mRNA|length=1965bp|location=Sequence derived from alignment at CM002465.1:633555..635519- (Nannochloropsis gaditana)
CCGTGACCATCGTCATCGCTTGTGGCGTCAGGATCTGTGCTCGCTCACTC
AAAAAGAGCGACACACAAAATTGAAGATGGCCCCCTCATCATAATCCAAG
AACAATGCGTTTGACTTCCCACAACCAGTCTCATCAACCTCGTTCGACGG
CAGTGTGACGGGGCTGGTTTTGCGAGCGGCATGGAGGCTCCTTTTTTGGC
TCCAGAGAGCTCTGGCAGCAGCCAAGATTGGAATGTGGCAAGTCAGGAGA
CAGTCATCCAGCGGCATCCGTGGAGGATCCACGGCTCGCGCTACTTTCAG
CTTATTCTCCTCTGTATCTTGATTTTGAATAACGCGGTGGTTTGGGTGGC
CTTTAGCGCGATTACGCCAGCAACGGCAGCAGTCTACGGCGTCTCACCAG
GCTTGGTGAATATTGTGGCACTTTCTTTCCAAATGTTGTTCCTTCCAGGC
ACGATAGCGGGATACATGCTGAAAGAGCGATGGGGTTTACGACTTACACT
TTTGGCCGGAGCATTTATGACAGCAGTGAGCGCGGCTATACGTTTTGTCT
CGCTTTATGTTCCTCCTGTTTCCTTCAGAAATGCCAGCACGGACGGTCAT
GATGTCAACAATGGGGGCTGCGCTTACGCCCTTCTACTGCTCGGCACGTC
CTTAGCTGCGCTTGCTCAGCCTTTGCTGCTCAATACTCCTCCTGATTTGG
CAGTGCATTGGTTTGCGGTGAAAGAGCGAGACCTGGTGACGAGCCTTGCG
TTCATGTGCTCGCCCCTAGGTAGCGCTCTCGGTGTCACACTTGCGCCCCT
CTTTGTCAGTGAAGCGGGGGCCGACACGGAAGAGGACATCTCTGGGAACC
ATCGCAATGATGCCCGAGGCGGGTTGCGGCTATTTCTGCTCGCGCAGCTG
GGGATGGGCGTGGCCACCACTCTCTTGGCGCATGCGGGGGCGACAGACCG
CCCTCCGACCCCGCCGAGCCGAGCGGCCGCACTCGGTAGCCAGCGAGAGG
AGGAGAGGGTAGATTCTTCAGACGCATTAGGCTCGCGCGTGCTTTCTATG
CCCCTCGCCTGGCAGCTTGTGGTGCCGGACCTCCGTCGCTGTCTCCTATG
CAACCCTTCTTTCCTCCTCCTCCTTTTTTGCTTCGGCATCGGTCTTGGTT
TCTTCAACGCCCTCCTTACTCTTCTCGGTCAGCTTCTCGCACCGTGCGGC
TACCCGGAAGCGGAGGCTGGGGCCCTGGGGGGCATTTTCTTGGGCACAGG
CTTGGTGGGCGCCGTGATGGCAGGCCTGCTCATGGACGCCAGTCATCGCT
ACGGCCTCCTTCTCAAGGGCGGGTTCCTTGGCGCTTGGGCTGCCTCCCTC
TTCTTGGTTTTTACACTGCGTCCGGACAACTTCCTTGTCCTAGCCCTCTG
CTTTGGTCTCTTGGGCTTCACGATGCTCCCCCTGCTCCCTGTCGCGATCG
AAAACGGGGTCGAGATCACCTACCCGGATGTACCGGAATTCTTCTCCTCG
GGGCTTTTGCTGAGCGCGGGCAACTTGACAGGAATTCCTTTGGCATTCCT
TTTCGCCTGGACAATCGACAGCTACGAAGGAAGCTGTCGAAAGCTCTGGA
AACCCGCCGCCGTCTTGGTGGTAGTGGTCACCACCGCCTGCGCGCTCCCC
GTCCTGGGCTATCGGCCTCGCGCCTTCGGCAGGTGGGAGGCGGAGAAAGA
GCAGAGGAGAGAGGGGTTGGAGGGCTGTGGACATGATGTGGCGACTCGTG
ATGCTTGAGTCCAGGGAGAGGAGTAATGGAAACACAGCGTTGCGTTCAAA
GGACGGGACAAGATGCTCCACGCCTAGAGGCTTGCCGTGGGAAGTCGTGA
GGAGAGGAGGAATAGCGAGAATGAATATTTCGACTGCGCGAGGCAAAGTA
AATACGTGACCCAAAGTAATGTAAATGAACGCTGTGTAACGCAAAATTAC
GCACATTGCCTCAGC
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Coding sequence (CDS) from alignment at CM002465.1:633555..635519-

>rna5291 ID=rna5291|Name=rna5291|organism=Nannochloropsis gaditana|type=CDS|length=1578bp|location=Sequence derived from alignment at CM002465.1:633555..635519- (Nannochloropsis gaditana)
ATGGAGGCTCCTTTTTTGGCTCCAGAGAGCTCTGGCAGCAGCCAAGATTG
GAATGTGGCAAGTCAGGAGACAGTCATCCAGCGGCATCCGTGGAGGATCC
ACGGCTCGCGCTACTTTCAGCTTATTCTCCTCTGTATCTTGATTTTGAAT
AACGCGGTGGTTTGGGTGGCCTTTAGCGCGATTACGCCAGCAACGGCAGC
AGTCTACGGCGTCTCACCAGGCTTGGTGAATATTGTGGCACTTTCTTTCC
AAATGTTGTTCCTTCCAGGCACGATAGCGGGATACATGCTGAAAGAGCGA
TGGGGTTTACGACTTACACTTTTGGCCGGAGCATTTATGACAGCAGTGAG
CGCGGCTATACGTTTTGTCTCGCTTTATGTTCCTCCTGTTTCCTTCAGAA
ATGCCAGCACGGACGGTCATGATGTCAACAATGGGGGCTGCGCTTACGCC
CTTCTACTGCTCGGCACGTCCTTAGCTGCGCTTGCTCAGCCTTTGCTGCT
CAATACTCCTCCTGATTTGGCAGTGCATTGGTTTGCGGTGAAAGAGCGAG
ACCTGGTGACGAGCCTTGCGTTCATGTGCTCGCCCCTAGGTAGCGCTCTC
GGTGTCACACTTGCGCCCCTCTTTGTCAGTGAAGCGGGGGCCGACACGGA
AGAGGACATCTCTGGGAACCATCGCAATGATGCCCGAGGCGGGTTGCGGC
TATTTCTGCTCGCGCAGCTGGGGATGGGCGTGGCCACCACTCTCTTGGCG
CATGCGGGGGCGACAGACCGCCCTCCGACCCCGCCGAGCCGAGCGGCCGC
ACTCGGTAGCCAGCGAGAGGAGGAGAGGGTAGATTCTTCAGACGCATTAG
GCTCGCGCGTGCTTTCTATGCCCCTCGCCTGGCAGCTTGTGGTGCCGGAC
CTCCGTCGCTGTCTCCTATGCAACCCTTCTTTCCTCCTCCTCCTTTTTTG
CTTCGGCATCGGTCTTGGTTTCTTCAACGCCCTCCTTACTCTTCTCGGTC
AGCTTCTCGCACCGTGCGGCTACCCGGAAGCGGAGGCTGGGGCCCTGGGG
GGCATTTTCTTGGGCACAGGCTTGGTGGGCGCCGTGATGGCAGGCCTGCT
CATGGACGCCAGTCATCGCTACGGCCTCCTTCTCAAGGGCGGGTTCCTTG
GCGCTTGGGCTGCCTCCCTCTTCTTGGTTTTTACACTGCGTCCGGACAAC
TTCCTTGTCCTAGCCCTCTGCTTTGGTCTCTTGGGCTTCACGATGCTCCC
CCTGCTCCCTGTCGCGATCGAAAACGGGGTCGAGATCACCTACCCGGATG
TACCGGAATTCTTCTCCTCGGGGCTTTTGCTGAGCGCGGGCAACTTGACA
GGAATTCCTTTGGCATTCCTTTTCGCCTGGACAATCGACAGCTACGAAGG
AAGCTGTCGAAAGCTCTGGAAACCCGCCGCCGTCTTGGTGGTAGTGGTCA
CCACCGCCTGCGCGCTCCCCGTCCTGGGCTATCGGCCTCGCGCCTTCGGC
AGGTGGGAGGCGGAGAAAGAGCAGAGGAGAGAGGGGTTGGAGGGCTGTGG
ACATGATGTGGCGACTCGTGATGCTTGA
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Synonyms
Publications