rna5281, rna5281 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5281
Unique Name	rna5281
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1940
Alignment location	CM002465.1:607985..609411 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100005g73.6668.mrna
Orig protein id	gnl\|cribi\|Naga_100005g73.6668
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:607985..609411 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g73	gene5101	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5281	rna5281-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25374.1	cds5268	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:607985..609411+
coding sequence from alignment at CM002465.1:607985..609411+

mRNA sequence

>rna5281 ID=rna5281|Name=rna5281|organism=Nannochloropsis gaditana|type=mRNA|length=1940bp
CGCCTGCTGGAACAACTTTCGGGGGCTTGTAATCCCCACTCATGTCATCC
GCTGCTATTGTTCCTCTTCTTACTTACCTTTGCCATTTTTTTTCAAATTT
GGTCACAGGGATATCAACGAAACCATTGGGAGGTTGAAGTGGTGTATAAT
TCAGCATTTTTTTGGCTTGCCTCCCGTCCACGCCTCGTCCCTGTTGCCAC
GTCTCACCCTTGCCACACAAGTATTTTTTTGCAACGCAGTCTTTTCTCGC
GGTAACTCCGAAGCGCAAGGACAAAACAACAAGTAATATCAAAAAACATG
AGAGGCCTGCCGTCTATGGTGCTATGCCTGCTTTTGCAACCCGCGCTCGT
TGAGGCTTTCACGTCCCGTCTGTCGCCTTTGACGATCCCCGACACAGTGA
TAATGACATCGAGACAGAAACCGCCACCAATAATGACTCCAACCAAGCAG
ATTTCTCAGCACACTAGAATAAGACCATTGTTATCTAGCACATTGCCGCA
AGACAGGCCTGAGCGGCAAGGGAGGCGGTGGAGAAGAAGTCAAATACCCG
GCGAGGCGATTGAATACAGTATGAGTGAACGGAAACCGATTTTGTCCACC
GTCGTGGAGGTTCTTGCATCAAAACTAGTCCGCAAAACAGCAAGACGCGT
GACAGGCTTGGACGTTGATGTGGGGGCACGCTCTAATTCGGATGTTCTTG
CTGGGAACTTGCCGTTAGTGAAGGCGAAGTTCAGCCGCATTGTCCTTGAA
AACCTGCAAATCAGCGGGGGAGGGCGCATGGAGATCACCGGGCTGAACAT
CAGGCTGTTGGCCCTACTTCTAGCTCGCCGACTGTCTCTCATTCGAAAAC
CTTTCGAGGTATGCGGAGAATACGTGCTTACCCAGCAAGACGTGTCCGCC
TCCAAGCTCATCCGCGACATGGTTCAGCTCCTCGTCAACAACGTCCTCCG
CACCCTCTTCCCCTCCCTGCACTTGACCTTCTTCGACGTTTCCATCGACT
CCGTCCGCATCTCCCCCCGGAGAAAGCTAGCAGTGCACGGAACGGCCAAC
GTGGCGGAGTCAGCCTCGGGGATGCCCTTCACGCTCCTGACGGGGGTGGG
CCTGGCGGGGGACGGGCACATCGTGTACCTGGACGACCCGGAGCTAGTGC
TCAACCCCGAGGCGCCCCTGCCAGTGAAGGTGCCCTTGGGCTCCATTCGG
GCGTTTGACGTGGACATCGGAGACAACGCGCGCATCGAGCGACTGGAGAT
AGATGAGGCAAGGGGTGTGACGGTGACGGCCCGCACCCTTATCACACCGG
CACCGCCATTTCAGGTCACGGATGTGGGGAAGCGGGCGGCCTTTTTGTAT
GACATGGGGGCGTTCTTCAGCAGTTTTTTCGGGTTCACCCATTTTTCTGA
TCTGAACCTGGATGGCTAATGCCGAGTGACGGAACGGCGGTCAGGGAGGG
GGACGGAGGGTGAGGAAGCGAGCTAGAACAGACATAGGGGCGTATGGGGA
GTACCACAGGAACTAGAAGCCATAAAATTGTGGACGTCAGAGGCGAAAGA
GGCGCTTGGATGGCAGACGCAGCCGATGACTGGGTGGATGCCGAGGCCGG
CCATGAAAGGATGCCGAGGCCGGCCATGAGGAGCGTGGCGGAGGGCGAAT
GCTTCGAAAGGGAGTTCCAGTGAGTGCATGTGCAGGGAATAGACAGGTAA
TTTAAGAAAGTGTGACAACTGAGCGCTAGAGAACGGCTGCATACATTGCT
GGTCAGTTTGAATGTAGCGCAAACCGCTTGTACAGATAGACATAGAGAAT
GCAACACAGACGCGAATGCTTGTATATAACTGCTTAGAATTGATTTTTGT
CATAGAGTACAATTGAGGCATTAAGTAAGGTTCAAAGGAAGTGATTGACG
AAGTTGTCACAAATATTTCAAGTTCACCAGCCTATCTGGT

protein sequence of rna5281

>rna5281-protein ID=rna5281-protein|Name=rna5281|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MAKVMVAQQETGCVRVTEELPLQVTSHNPMQSSNKSQAYPGDATASTVPK
QELQQPLLQPTAPDVSHVAIDIDEQRRKQKKQAAFSVCGTILLVVILLLT
FLIPRSPSIELSGGEVGLSGVPLYVNASFRFTNRNFYKTTFSDLHFGLYT
LSDTGVGVIGDASYAGPIEVKARHHKIIQVGIATAKGSALRIKDYCTSHP
SILMFLSNATVEATSKYRDFGVRSVYSPYGAFFMCPTPPPSSLDAPGATM
RDEAPEESNGIKRHVWPHKYQAAEEIFKCNKW

mRNA from alignment at CM002465.1:607985..609411+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5281 ID=rna5281|Name=rna5281|organism=Nannochloropsis gaditana|type=mRNA|length=1427bp|location=Sequence derived from alignment at CM002465.1:607985..609411+ (Nannochloropsis gaditana)
atggcaaAGGTAAGTAAGAAGAGGAACAATAGCAGCGGATGACATGAGTG
GGGATTACAAGCCCCCGAAAGTTGTtccagcaggcggaggcagccTCCGG
CAGGGAGATTTTGTGGACCGAATCAGGTCGGGATTTTGTGACCGAATCAg
gttggaagaggggagCTCACCGGTCTTTTGTGGACCGACAACCCGGCCTG
AGCTTGCgttttgtggaccgaggggcCGGCCCAAGAAAATTCAAGAAACG
GGTAGATGGGCCTTCGTGTACGGGTGGGAATTGTGATTGCACGCCTAGTC
TGCGAGCAATAACGTGATATGTGGCTGCATCACCTCAATAATTTGATTCA
TCTCTTTCCGTCATTTTTGTCTGACCGAAGTGGTCGCACAACAAGAGACA
GGTTGTGTACGAGTGACCGAGGAATTACCATTACAGGTTACCAGTCATAA
CCCTATGCAGTCCAGCAATAAGAGTCAGGTGAGCGTTGCTACCTCACTTG
ATTTTGACAAAAGGAGGGTTATACAATCTTATTCGATTTTTGATCGTAAT
AATGCTTCTGTGCATGGTTTTGTTCTCGAGATACAACGAGGAAAGCATGG
TGGGAAGCAGGACACTGAACTCGCGCGCGATCTCTCACATAAGTATAGGC
GTATCCCGGTGATGCTACTGCATCCACAGTGCCTAAACAGGAGCTACAGC
AACCTCTGCTTCAGCCCACAGCGCCAGATGTGTCCCACGTAGCCATTGAC
ATTGATGAGCAGAGACGCAAACAAAAGAAGCAGGCTGCCTTCTCTGTCTG
CGGCACAATCCTTCTCgttgtcatcctcctcctcacctttttGATTCCGC
GCTCTCCGTCCATTGAGCTCTCTGGAGGCGAAGTGGGTCTCTCGGGCGTC
CCCTTGTACGTCAACGCCTCGTTCCGATTCACCAACCGCAATTTTTACAA
AACCACCTTCAGTGATTTGCATTTCGGACTTTACACGCTCAGCGACACTG
GTGTTGGAGTCATTGGCGACGCTTCGTACGCAGGGCCGATCGAAGTGAAA
GCCCGACACCACAAGATCATTCAAGTGGGCATCGCTACAGCAAAGGGAAG
CGCGTTGAGGATTAAAGACTACTGCACATCGCACCCTTCTATCCTCATGT
TCCTATCCAATGCAACTGTTGAAGCAACTTCAAAGTACCGAGACTTTGGC
GTCCGTAGCGTGTACTCGCCCTACGGTGCCTTTTTCATGTGTCCTACTCC
TCCGCCATCTTCTTTGGATGCCCCAGGCGCGACAATGCGCGATGAAGCGC
CAGAGGAATCGAACGGTAGCTTGATGTTACCAGGAAAGGGCGGAAATTAG
GCCCAGGAATAAAAAGACACGTTTGGCCTCACAAATATCAAGCCGCCGAA
GAAATTTTCAAGTGCAACAAGTGGTGA

Coding sequence (CDS) from alignment at CM002465.1:607985..609411+

>rna5281 ID=rna5281|Name=rna5281|organism=Nannochloropsis gaditana|type=CDS|length=3396bp|location=Sequence derived from alignment at CM002465.1:607985..609411+ (Nannochloropsis gaditana)
atggcaaAGGTAATGGTCGCACAACAAGAGACAGGTTGTGTACGAGTGAC
CGAGGAATTACCATTACAGGTTACCAGTCATAACCCTATGCAGTCCAGCA
ATAAGAGTCAGGCGTATCCCGGTGATGCTACTGCATCCACAGTGCCTAAA
CAGGAGCTACAGCAACCTCTGCTTCAGCCCACAGCGCCAGATGTGTCCCA
CGTAGCCATTGACATTGATGAGCAGAGACGCAAACAAAAGAAGCAGGCTG
CCTTCTCTGTCTGCGGCACAATCCTTCTCgttgtcatcctcctcctcacc
tttttGATTCCGCGCTCTCCGTCCATTGAGCTCTCTGGAGGCGAAGTGGG
TCTCTCGGGCGTCCCCTTGTACGTCAACGCCTCGTTCCGATTCACCAACC
GCAATTTTTACAAAACCACCTTCAGTGATTTGCATTTCGGACTTTACACG
CTCAGCGACACTGGTGTTGGAGTCATTGGCGACGCTTCGTACGCAGGGCC
GATCGAAGTGAAAGCCCGACACCACAAGATCATTCAAGTGGGCATCGCTA
CAGCAAAGGGAAGCGCGTTGAGGATTAAAGACTACTGCACATCGCACCCT
TCTATCCTCATGTTCCTATCCAATGCAACTGTTGAAGCAACTTCAAAGTA
CCGAGACTTTGGCGTCCGTAGCGTGTACTCGCCCTACGGTGCCTTTTTCA
TGTGTCCTACTCCTCCGCCATCTTCTTTGGATGCCCCAGGCGCGACAATG
CGCGATGAAGCGCCAGAGGAATCGAACGGAATAAAAAGACACGTTTGGCC
TCACAAATATCAAGCCGCCGAAGAAATTTTCAAGTGCAACAAGTGGTGAa
tggcaaAGGTAATGGTCGCACAACAAGAGACAGGTTGTGTACGAGTGACC
GAGGAATTACCATTACAGGTTACCAGTCATAACCCTATGCAGTCCAGCAA
TAAGAGTCAGGCGTATCCCGGTGATGCTACTGCATCCACAGTGCCTAAAC
AGGAGCTACAGCAACCTCTGCTTCAGCCCACAGCGCCAGATGTGTCCCAC
GTAGCCATTGACATTGATGAGCAGAGACGCAAACAAAAGAAGCAGGCTGC
CTTCTCTGTCTGCGGCACAATCCTTCTCgttgtcatcctcctcctcacct
ttttGATTCCGCGCTCTCCGTCCATTGAGCTCTCTGGAGGCGAAGTGGGT
CTCTCGGGCGTCCCCTTGTACGTCAACGCCTCGTTCCGATTCACCAACCG
CAATTTTTACAAAACCACCTTCAGTGATTTGCATTTCGGACTTTACACGC
TCAGCGACACTGGTGTTGGAGTCATTGGCGACGCTTCGTACGCAGGGCCG
ATCGAAGTGAAAGCCCGACACCACAAGATCATTCAAGTGGGCATCGCTAC
AGCAAAGGGAAGCGCGTTGAGGATTAAAGACTACTGCACATCGCACCCTT
CTATCCTCATGTTCCTATCCAATGCAACTGTTGAAGCAACTTCAAAGTAC
CGAGACTTTGGCGTCCGTAGCGTGTACTCGCCCTACGGTGCCTTTTTCAT
GTGTCCTACTCCTCCGCCATCTTCTTTGGATGCCCCAGGCGCGACAATGC
GCGATGAAGCGCCAGAGGAATCGAACGGAATAAAAAGACACGTTTGGCCT
CACAAATATCAAGCCGCCGAAGAAATTTTCAAGTGCAACAAGTGGTGAat
ggcaaAGGTAATGGTCGCACAACAAGAGACAGGTTGTGTACGAGTGACCG
AGGAATTACCATTACAGGTTACCAGTCATAACCCTATGCAGTCCAGCAAT
AAGAGTCAGGCGTATCCCGGTGATGCTACTGCATCCACAGTGCCTAAACA
GGAGCTACAGCAACCTCTGCTTCAGCCCACAGCGCCAGATGTGTCCCACG
TAGCCATTGACATTGATGAGCAGAGACGCAAACAAAAGAAGCAGGCTGCC
TTCTCTGTCTGCGGCACAATCCTTCTCgttgtcatcctcctcctcacctt
tttGATTCCGCGCTCTCCGTCCATTGAGCTCTCTGGAGGCGAAGTGGGTC
TCTCGGGCGTCCCCTTGTACGTCAACGCCTCGTTCCGATTCACCAACCGC
AATTTTTACAAAACCACCTTCAGTGATTTGCATTTCGGACTTTACACGCT
CAGCGACACTGGTGTTGGAGTCATTGGCGACGCTTCGTACGCAGGGCCGA
TCGAAGTGAAAGCCCGACACCACAAGATCATTCAAGTGGGCATCGCTACA
GCAAAGGGAAGCGCGTTGAGGATTAAAGACTACTGCACATCGCACCCTTC
TATCCTCATGTTCCTATCCAATGCAACTGTTGAAGCAACTTCAAAGTACC
GAGACTTTGGCGTCCGTAGCGTGTACTCGCCCTACGGTGCCTTTTTCATG
TGTCCTACTCCTCCGCCATCTTCTTTGGATGCCCCAGGCGCGACAATGCG
CGATGAAGCGCCAGAGGAATCGAACGGAATAAAAAGACACGTTTGGCCTC
ACAAATATCAAGCCGCCGAAGAAATTTTCAAGTGCAACAAGTGGTGAatg
gcaaAGGTAATGGTCGCACAACAAGAGACAGGTTGTGTACGAGTGACCGA
GGAATTACCATTACAGGTTACCAGTCATAACCCTATGCAGTCCAGCAATA
AGAGTCAGGCGTATCCCGGTGATGCTACTGCATCCACAGTGCCTAAACAG
GAGCTACAGCAACCTCTGCTTCAGCCCACAGCGCCAGATGTGTCCCACGT
AGCCATTGACATTGATGAGCAGAGACGCAAACAAAAGAAGCAGGCTGCCT
TCTCTGTCTGCGGCACAATCCTTCTCgttgtcatcctcctcctcaccttt
ttGATTCCGCGCTCTCCGTCCATTGAGCTCTCTGGAGGCGAAGTGGGTCT
CTCGGGCGTCCCCTTGTACGTCAACGCCTCGTTCCGATTCACCAACCGCA
ATTTTTACAAAACCACCTTCAGTGATTTGCATTTCGGACTTTACACGCTC
AGCGACACTGGTGTTGGAGTCATTGGCGACGCTTCGTACGCAGGGCCGAT
CGAAGTGAAAGCCCGACACCACAAGATCATTCAAGTGGGCATCGCTACAG
CAAAGGGAAGCGCGTTGAGGATTAAAGACTACTGCACATCGCACCCTTCT
ATCCTCATGTTCCTATCCAATGCAACTGTTGAAGCAACTTCAAAGTACCG
AGACTTTGGCGTCCGTAGCGTGTACTCGCCCTACGGTGCCTTTTTCATGT
GTCCTACTCCTCCGCCATCTTCTTTGGATGCCCCAGGCGCGACAATGCGC
GATGAAGCGCCAGAGGAATCGAACGGAATAAAAAGACACGTTTGGCCTCA
CAAATATCAAGCCGCCGAAGAAATTTTCAAGTGCAACAAGTGGTGA

Synonyms

Publications