rna5277, rna5277 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5277
Unique Name	rna5277
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2691
Alignment location	CM002465.1:597485..599446 +

Link to JBrowse

Properties


Property Name	Value
Product	short-chain dehydrogenase reductase acting with nad or nadp as acceptor
Orig transcript id	gnl\|cribi\|Naga_100005g68.6688.mrna
Orig protein id	gnl\|cribi\|Naga_100005g68.6688
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:597485..599446 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g68	gene5097	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5277	rna5277-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25394.1	cds5264	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:597485..599446+
coding sequence from alignment at CM002465.1:597485..599446+

mRNA sequence

>rna5277 ID=rna5277|Name=rna5277|organism=Nannochloropsis gaditana|type=mRNA|length=2691bp
GGCGTGACGTCCGTGCTGAGAGGACCCGTGCAGGATGATCGAGCGAGGGC
GAGGAAGGAGGGACAACGGCCTCGAAACCAGGGCTGGGACGCACGCCACG
CTCGACTTTGCGAGGCCTACTGAACATCAAAGGCGCGGCGCTTTATTTTC
CTGTCATGTTCTTGCCAGAATATCTTTATGTTTTCACTCTTCTCAATGGC
TTCCACAAAAAACAGAGAAGCACGAATCACGACAAGGAAGCGAAGTAACG
CGAAAGGCCATCACAACACGTCTAAATTTCGCTTCCAACTAATAGTTGCT
TTTAATTATTGCTCGAAGATGATACCTGCGGCACTCCAAAATGAGGAGTG
CATATTTCCCTCACGCGATTTTGACGTCCCAGCTCTTTACAAGACTGAGA
TTACGGATGAAAATGCATCTCGGATCCTGGCATACATTCAGCTCCTTACG
GAAGATGACCGCCTGATGATAGCGGAGGACTTGCGAAAAAAACTGGAAGC
TTTCGTAAAAGAGCAGCCCTTGAGTCAAGTTAAAGAAAATATCCGCAGGC
AGATGCAAGAGAGTCCATTGCAAGAGCAGCTAGCTTTGTTGAGCAGACGA
GGTGTTGAGTGCTTAGAGGCTGCCGAGGACCTGGCGAGCCGAGAGAACTG
GACGCTGGCCTTTCGGACCTTCGGGTTCGACACGTTCGTGCGGCCGGTAG
GGGAGCAGATGTATGTCAAGGTGGAAGGGGAACAGGAAGGAACGTCAATA
TTTGACCAGCTCTTGGTGGTGCGCGAGGCAGCTATGTACCATCGGTGGGG
CCCTTTCGTCTGCAGCTCAGCACTCGTCCACTCGTTCAAGCAGTTGGATC
TCATGGTTACTTTCGAGCTCAACGCCCCTTTGTTCCACCGCGACTGCCTC
ATGCGTGGCTACGCCTGCGACTACTCAGAGAAAGACATGATCCTCATATG
TGGAGACTCGGTGGTGCCAGCGGACTATCCGAGCCTAGGCCTGTCCACCG
AGCCCAACGGCTGGCTCTTCAAGAGGATGTCGATCACACGCTTTCGATGC
CAGGTTCAGTTGCGCGGGGTGAATAAGGGCAAAGTCATCATGGCTGCACT
TATTGACCCTAGGACGGCTCTGCCTCAAAGCGTGATTAATTTTTGTTTGC
AGCGCATAGTGGGTGTGCTTCTGTATCTGCTCTTGCGCACGGCTCAGCGG
CTCAATCAGGCCGGTGACAAGCTGGGTGCCGACTTTTTGCAGGTGATACG
GCGGGACCCCTACTATTTTCGGCATTGTTTGCCTCGCATTCTCTGGTACT
GTCAGCAAAAGGGATGGGAATACCCCGTCGCGGGCACAATGGGTGGGGAT
ATGCTGCTGGCTGGTATGGCGAAAGCGATGCATAGCGTTAAGGAAGACGA
TCAGGCAGCTCGAGCGATGGCCCAGCAGGGCAGACAGTCCGAAAACGGCC
CAGGTTCTGCGCCGCCTATACAGGAGTCGGCGGCCGATCGGGAGAGTCCG
GAGACTCAGGCGAAGAAAAGAGGCAAACTCTCCTTGCGCGGAATTTTTCG
CAGGAGAAGGGGCCGAGACGATGTTCAGCGCAAACAACTGTTTCAAGTCG
CTGGTGGCAGCCGCGGCAATGCTTCCAGTGCTAATTTGATGGATTGTGGA
GAAGCTCCCTCTCGTGCCGCTCCCACAGACGTGGCTCAGGCGGAGGATAT
GAGCCCACAGCAAGTGAATCAGACAAGCGCCATGCAAACTCAGGAAATTG
ACCTTCACCAGGATGAAGGTGTACCTTCTTGGACGTTAATAGTCGTGACA
GCCATGTATCTAATCGTCCGTGTCACTATTGTTCCCCTAGTCAGACGGTT
TAGCGGCCCTGTTGGGGAAGCTATTGTTCTCGCTTTCTTACTCCAACAAA
CACTATCGTTACTTCTGAAGAAGAATGTCCTGGATGCGACCGCTTTGACC
GCTGTTGGCCACTTTGACCTCTCTTACGCCTTTTTTGCCGTCTCCTTAGG
CTTGTCTGTAGGAAGTTTGCTTCTGCCAAGGTCAAGACGATGGCATGTGG
ATTTGAAAGGGGTCCACCACCCTCCGATATGGGATAACAGGATAGATGGA
GGTGTCCATGCCATTAACACGGGTCTCTTCCTTATTGTCATGCTCATCAT
CGTTTGCCAGCACATGAAACACCGGGAAACTCGATTGCCACCTTCTTAAA
TACAGCCTGAACGCTGAATGGTAGCTCTGTGCAAATGTATTTCTTCTCTT
CTACAGGGGGAAGGAATGAATGCGAGCTCCCTGTAGATATGCACTCTCCC
ATGTTGGTTAATTTAGAAAAAGCGCGTGCTGTATATCTCATTGTCCGCAC
TTCATTCAGAAAGTAAAAACGCTACCACTTGTAGTCAATGCGTGCATGTT
ATTTTCTACAAGGACCATCCTTGTACTTCTATAATAGTAATATAAGCGTT
GAATGGTCATATTCGTACATCTTGTCTGCGAAAACTGGCAGGTGAATATA
TGTTTAAAGTGCTGTCATTTACGCGCTACTTGCAGAGGAGCCGGAAGTAG
GATGCACACGTACTCTTCCACTAAAATGTGAAGAAAACATGAAAGGCAAC
AGCCGAGCTTGTCGTGCTGGCGATCGTGAAAATAAAACTGAAGATTTCGC
TAACCCGACTCCTTGCCTCTCTCGATGCTGTGCTTCTAATT

protein sequence of rna5277

>rna5277-protein ID=rna5277-protein|Name=rna5277|organism=Nannochloropsis gaditana|type=polypeptide|length=327bp
MDLKSLLNVTAVDFTEALKTQPALGQLLFGVGAVLVLKFVLSTFQAFYRF
FLRPGKKLRKFGEWAVVTGATDGIGKAYAFELARQGLSLLLISRTETKLR
DTAAEIKSKYPNVEVHILSIDFGNFNEDAQAKVKQATKGLDVGVLINNVG
QSYDFPMYFDELSDEHVHALVDLNVTSTLYMTRLLLPSMVAKRRGAVVNL
ASAASRNPSPLLSLYSGAKSFVELFSQSLDAEYKGRGIRVQVQTPLFVAT
KLAKIRKASLTVPSPAGYAKAAVRFIGYEDSVSPYWSHAFQLYLMSCMPK
SLLSIIVLNMHAGLRKRGLKKKVQKSA

mRNA from alignment at CM002465.1:597485..599446+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5277 ID=rna5277|Name=rna5277|organism=Nannochloropsis gaditana|type=mRNA|length=1962bp|location=Sequence derived from alignment at CM002465.1:597485..599446+ (Nannochloropsis gaditana)
tcgATCATCCTGCACGGGTCCTCTCAGCACGGACGTCACGCCGTGCACAG
CGGGGGAGTGTATCCCACCTATCATAAGCATGTACAAATCCAACACGCAT
GTCACCCTGCCGTCCAGCAAGCTCTGCTGCACGCCCCCTTCGTGGCAAAT
CCCTGATCCGACGGCTTAGATCAGGTCagcgaggcgagggcgaggcgacT
CCTACTAGTAACCTTTGTCCCTCCGCGACCTAGGTGCACTACCCAGAGCG
ACAACTCTCACTCGGAAGCCATCAGGCATTTGAGGCGGCTATGGTTGTCA
TGGTCAGAATCCTTGCACATTGTTAGTGAGAAGTAGAAGGATCGGGAAGG
AGACCACCGCCCGAGGCAGCAAAGCTTGTGCGTGATGCTGTGCGCAGACG
CAGGCCCGCTATTGCACTCAACGCGTCGGTGGCAGAGACACACACATTTA
AACCAGTGCGCGCATGATTACGCTTAAAGCAAGAGCGAGCTTACATCAAG
ATAGAGTTGAGTGATGATGATTTGGTATTCGCGAGGTAAACACGATACAG
CTCTTCAGCCTGACATGAAGCctccgacctccctcccaacacGCGACcaa
cacacacacacacacacttTTTTACCTGTCTACTTAAGCTAATTCTACTT
TCTTCATGACATAGAATTAATTCTCTACATGGATCTCAAGAGCTTGCTCA
ATGTTACGGCGGTCGACTTtacggaggccttgaagacaCAGCCAGCGCTT
GGACAGCTCCTGTTCGGGGTCGGAGCAGTGCTTGTGCTGAAGTTTGTGCT
CAGTACATTCCAGGCATTCTACCGCTTCTTTCTGCGTCCTGGAAAAAAAC
TGAGAAAATTCGGGGAGTGGGCAGTTGTGACAGGCGCGACGGACGGCATT
GGTAAAGCGTATGCCTTCGAACTTGCACGACAAGGATTGAGCTTGTTATT
AATTTCTCGCACGGAGACTAAGCTCCGAGATACAGCCGCGGAAATCAAAT
CCAAGTATCCGAATGTTGAAGTCCATATTCTCAGTAAGTGCGAGAAAGCG
AAATACGAGCATTTGATGCCTGGAGGGTAGAAAGTGCGCAGGTGGGGAGT
CTTTCCCCTTGGCTCCAGAGGAGAGACGTCATCGTGTTTTACCGCCGAGT
ACCCAACACATCGTGATTCAGGCATCGACTTCGGCAACTTCAACGAAGAT
GCGCAAGCGAAGGTCAAGCAGGCAACAAAGGGCCTGGATGTTGGCGTTCT
GATCAACAACGTGGGCCAAAGTTATGACTTTCCCATGTACTTCGACGAGC
TCTCGGACGAGCATGTCCACGCCCTAGTGGATTTGAACGTGACATCCACA
CTGTATATGACGCGCTTGTTGCTGCCTAGTATGGTAGCCAAAAGGCGTGG
AGCTGTGGTGAACTTGGCATCAGCTGCCTCTCGaaacccctcccccctgc
tctCTCTCTACTCCGGCGCCAAGTCCTTCGTCGAGCTCTTCTCCCAGTCC
TTGGACGCCGAGTACAAGGGGAGGGGTATCCGCGTACAGGTACAGACGCC
GCTCTTCGTGGCTACCAAGTTGGCCAAGATCCGTAAAGCAAGCCTGACGG
TTCCGTCCCCCGCGGGCTATGCGAAGGCGGCTGTGCGCTTTATCGGATAC
GAGGACTCTGTCTCGCCCTACTGGAGCCACGCATTTCAGCTCTATCTCAT
GTCCTGCATGCCCAAGTCTCTCCTTTCCATAATCGTGCTTAATATGCATG
CGGGTCTGCGCAAGCGAggtttgaaaaagaaggtCCAGAAGAGCGCTTAA
GACGAAGGCGCTTCCTCCGATCTTGAAGACATTCATGTCGTGGAATTTAC
CAAACAAGTAATTGGAAAGAGCAAAGTGCATGAGTGAGGGTGTTGGACTT
CCCATTCTTTGAGTAAAGCGAAGAAAAAGTGACGCTCATCCCTCAGGACG
AACAATTTTGAA

Coding sequence (CDS) from alignment at CM002465.1:597485..599446+

>rna5277 ID=rna5277|Name=rna5277|organism=Nannochloropsis gaditana|type=CDS|length=1968bp|location=Sequence derived from alignment at CM002465.1:597485..599446+ (Nannochloropsis gaditana)
ATGGATCTCAAGAGCTTGCTCAATGTTACGGCGGTCGACTTtacggaggc
cttgaagacaCAGCCAGCGCTTGGACAGCTCCTGTTCGGGGTCGGAGCAG
TGCTTGTGCTGAAGTTTGTGCTCAGTACATTCCAGGCATTCTACCGCTTC
TTTCTGCGTCCTGGAAAAAAACTGAGAAAATTCGGGGAGTGGGCAGTTGT
GACAGGCGCGACGGACGGCATTGGTAAAGCGTATGCCTTCGAACTTGCAC
GACAAGGATTGAGCTTGTTATTAATTTCTCGCACGGAGACTAAGCTCCGA
GATACAGCCGCGGAAATCAAATCCAAGTATCCGAATGTTGAAGTCCATAT
TCTCAGCATCGACTTCGGCAACTTCAACGAAGATGCGCAAGCGAAGGTCA
AGCAGGCAACAAAGGGCCTGGATGTTGGCGTTCTGATCAACAACGTGGGC
CAAAGTTATGACTTTCCCATGTACTTCGACGAGCTCTCGGACGAGCATGT
CCACGCCCTAGTGGATTTGAACGTGACATCCACACTGTATATGACGCGCT
TGTTGCTGCCTAGTATGGTAGCCAAAAGGCGTGGAGCTGTGGTGAACTTG
GCATCAGCTGCCTCTCGaaacccctcccccctgctctCTCTCTACTCCGG
CGCCAAGTCCTTCGTCGAGCTCTTCTCCCAGTCCTTGGACGCCGAGTACA
AGGGGAGGGGTATCCGCGTACAGGTACAGACGCCGCTCTTCGTGGCTACC
AAGTTGGCCAAGATCCGTAAAGCAAGCCTGACGGTTCCGTCCCCCGCGGG
CTATGCGAAGGCGGCTGTGCGCTTTATCGGATACGAGGACTCTGTCTCGC
CCTACTGGAGCCACGCATTTCAGCTCTATCTCATGTCCTGCATGCCCAAG
TCTCTCCTTTCCATAATCGTGCTTAATATGCATGCGGGTCTGCGCAAGCG
AggtttgaaaaagaaggtCCAGAAGAGCGCTTAAATGGATCTCAAGAGCT
TGCTCAATGTTACGGCGGTCGACTTtacggaggccttgaagacaCAGCCA
GCGCTTGGACAGCTCCTGTTCGGGGTCGGAGCAGTGCTTGTGCTGAAGTT
TGTGCTCAGTACATTCCAGGCATTCTACCGCTTCTTTCTGCGTCCTGGAA
AAAAACTGAGAAAATTCGGGGAGTGGGCAGTTGTGACAGGCGCGACGGAC
GGCATTGGTAAAGCGTATGCCTTCGAACTTGCACGACAAGGATTGAGCTT
GTTATTAATTTCTCGCACGGAGACTAAGCTCCGAGATACAGCCGCGGAAA
TCAAATCCAAGTATCCGAATGTTGAAGTCCATATTCTCAGCATCGACTTC
GGCAACTTCAACGAAGATGCGCAAGCGAAGGTCAAGCAGGCAACAAAGGG
CCTGGATGTTGGCGTTCTGATCAACAACGTGGGCCAAAGTTATGACTTTC
CCATGTACTTCGACGAGCTCTCGGACGAGCATGTCCACGCCCTAGTGGAT
TTGAACGTGACATCCACACTGTATATGACGCGCTTGTTGCTGCCTAGTAT
GGTAGCCAAAAGGCGTGGAGCTGTGGTGAACTTGGCATCAGCTGCCTCTC
GaaacccctcccccctgctctCTCTCTACTCCGGCGCCAAGTCCTTCGTC
GAGCTCTTCTCCCAGTCCTTGGACGCCGAGTACAAGGGGAGGGGTATCCG
CGTACAGGTACAGACGCCGCTCTTCGTGGCTACCAAGTTGGCCAAGATCC
GTAAAGCAAGCCTGACGGTTCCGTCCCCCGCGGGCTATGCGAAGGCGGCT
GTGCGCTTTATCGGATACGAGGACTCTGTCTCGCCCTACTGGAGCCACGC
ATTTCAGCTCTATCTCATGTCCTGCATGCCCAAGTCTCTCCTTTCCATAA
TCGTGCTTAATATGCATGCGGGTCTGCGCAAGCGAggtttgaaaaagaag
gtCCAGAAGAGCGCTTAA

Synonyms

Publications