rna527, rna527 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna527
Unique Name	rna527
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1851
Alignment location	CM002455.1:1321807..1324818 +

Link to JBrowse

Properties


Property Name	Value
Product	trans- -dihydrobenzene- -diol dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100115g16.6568.mrna
Orig protein id	gnl\|cribi\|Naga_100115g16.6568
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1321807..1324818 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100115g16	gene509	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna527	rna527-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30143.1	cds527	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1321807..1324818+
coding sequence from alignment at CM002455.1:1321807..1324818+

mRNA sequence

>rna527 ID=rna527|Name=rna527|organism=Nannochloropsis gaditana|type=mRNA|length=1851bp
AACATTGGGATCTGCAACCCCTCCCGCTTGAACGCAGAGGCCCCTGGCAT
CGGCGCACAAAGTCCCTTGTACTCCCTCGTCCTCGGGCGCGTCACAAACG
GTGGGTTGATACAACATGGAAATTTATAAGGATATGCCTGTGCTGTGTAT
TTGGGGTCGTAAATGCTTGCGATCGTTCGTGCATCAGTCTTGTTGGACGC
TTTGCAGTACATGCCACATGATCCAACCTCCCCACTCAGCTGGTATACCC
CCCTAAGACAAAACCCTCCATATCTCAGCCACAAGCTTGGAGTCGGAGAA
CTGATCCACCTCTATAACTACTTAAACATGTTTTGAATTTAGTCAGAGCC
CAGTCGCTCACTGAAATGTCTGTGGCTGCGCGAGGGGGGGACCATGCAGC
TATCCTACCAACAAGAAACAAAGTAAGAACTCCTTCTCCGCCAGGTGGGC
GTAAGCTCACTGACATTCGACAAGATAGTGTAAGGGTACTTCTTGATGCA
GGAAGACGTCTCCGACTACCGCAGGAAACTATTGCTACGGCAGCTTTGAT
CTTTCATCGATTTTTTGCCGTGCGGAGTCTACGTGAGTATGCGAGAAACA
GACGCCTCGACGTTGTGCTCACCACCTGCCTGTTCCTGGCCTCAAAAGTG
GAGGAGCAACCCCGGCGGATCCGAGACGCAATAAACTGCGTGTATGTGGT
GCGAAAACAACTGCTTGCCCAAGCCCAAGGAACCCGCTTCGTTGATACTT
GTGCACCCAGTGAGGGTGGCGATGCGGAAACATTGTCTGAACGGGGTTGG
GTACATGGTAACGGCAACGGGGGTGCGCCAGGAGAGCTCAAGGGGAACAC
GGATTTGGCCAGGTCCGTCAAGGGCAACATTCTGTCCCTGGATCGTGGGT
ACTGGGACCTGAAGGAAAGCGTGGTAGACACTGAGCAACTTGTCCTGCGG
ATCTTGGGCTTTGACCTGGAAACCTTTATGTCCTATCGTCTCCTCCTGAA
CTACGCTCGTTCTCTCCGTGCGCGGCCAGTCTTAGTGGAAGTGGCGTGGG
CACTTTTGAACGATTCCTTGTTTTCTCCTGCCTGCTGCCTGGCTCTTCCC
TCCCATGCTCAAGCGGTGGCGGCCTTGGACTTGGCGCAACGACTCCTCAC
GGCGGCGGGGGGGGACCGCGACGGCGAAAATGAGGACGGACCACCCGGGC
AACGAGGTGGGCTGAAGCTGGCAATTGACAAGGACATGGCTCCTATAAGG
GAGACAAGCACAGGCGTCGGAGGGAAAGGTCAGCTCAAGAAACACACCTT
TGCGAATTTAAGCACGTCTACTGCAAGGACTGTAGCATACAGCCGTCAGG
GTCACAAGAGCGAAGGAAGATTCAGTCAAGACGGGAAATTCGAACCACTT
GACTTTAACTGTCATGATCCCGGGGAGTTGAGAGTAAATTCCCGCATGTG
GAACGTGTTGGGGGCCCAAGGAAAGGACGTCCAAGCATGGTGCGACAGCC
TGCTGCACCTCTACGAGGAAGGGCCGGTCTAGGCGGGGCGTGCTTGTTTG
CTGTTGCAGCCAGCCTGGGACGCGAATGCAATCGGAGCAGATGTCAATTG
GTTGGGAGTGAGACACGGGAAGGGCGAAGACTTTTCGTGGCGACACGGGA
CTGGCGTGGTGATTAGTGTGGATGGAAAGTGGCGCGAGGAGAGCATATAG
AAGAGGCTAGGGGAGGCTGAGGATGTCTTCGCGGTATGAGTGTACAAAAC
AGATGATGTGAAGCTACTTACAAATGGGATGTACATAAAAATAGAAAGGG
CGGGCTCGACGCTCACGTCCGGGAAAGCAACGCTCAACAGGTGGCTTGTG
C

protein sequence of rna527

>rna527-protein ID=rna527-protein|Name=rna527|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MDSNGNNSVEDVVRSLDAFFSSSSSSPPSSAPRPVPLDIADGLTLLSPPT
AAGATLNWGIMGAGRVSHDFVQALKALPQARVVAVGASTLPKAEAFASTH
KIPGAHGSYEALARDPEVQIVYVGTLHAFHKEHALLALEAGKHVLVEKPV
ACRAEDGVVMVGRAREKKLLFLEGMWTRFFPVVEMARYLISSGAIGRVVA
LHADFGFNSSDSEGYPDSPFFNHVLGGGGLLFVGVYPISMAPLCFGSRMP
TKIAAAGVVDAPTGVDLSGGVILEYEGGREGGGLAVLTYNLMGETPEETT
IVGTEGRIKILGPAHCPTQMVLYRKHKGRRNVQAFDFEYPLPAPLPAVEA
TGGFNYPNSQGFMYEAAAAQRCVLAGLGETPQYTMEETLIVAKIMDEVRR
QLGVRAVGGGGEDGKGTK

mRNA from alignment at CM002455.1:1321807..1324818+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna527 ID=rna527|Name=rna527|organism=Nannochloropsis gaditana|type=mRNA|length=3012bp|location=Sequence derived from alignment at CM002455.1:1321807..1324818+ (Nannochloropsis gaditana)
TGACTAAATTCAAAACATGTTTAAGTAGTTATAGAGGTGGATCAGTTCTC
CGACTCCAAGCTTGTGGCTGAGATATGGAGGGTTTTGTCTTAGGGGGGTA
TACCAGctgagtggggaggttggatcATGTGGCATGTACTGCAAAGCGTC
CAACAAGACTGATGCACGAACGATCGCAAGCATTTACGACCCCAAATACA
CAGCACAGGCATATCCTTATAAATTTCCATGTTGTATCAACCCACCGTTT
GTGACGCGcccgaggacgagggagtaCAAGGGACTTTGTGCGCCGATGCC
AGGGGCCTCTGCGTTCAAGCGGGAGGGGTTGCAGATCCCAATGTTGCAGG
TTTCTTCACGGCGTTGATGCGCCGTGCTTCCACACTAGGAGGACCAGTgg
tagaagagggaagcaccgggacggagggattgACGGTTTTGATCGAGACT
GACAAACGGTAAGTGTGGTCAAGGCACTGAGAAAACGGGGTGAGGGAAAT
GCGTCAGGTAAAGAAAAAGGCGACGATGCATCGAGTGCCGTAAGTCTTTC
TCACTACAATGTTCAATCGAGATTGTTGTTCAAGCTCACTATTCTTCAGT
TTTGGTTCCCGTGCGTAAATAGTACCCGGGGTGCGGAGATCGGCTTGAAT
GGTTTGATCTGCTTTTGTGCACCTTCATCTAAGTcgaggcccctctcccc
ttcccgtccctgcACACAGCTCCATCGTGGTCAAGGAATACGATGATTTA
ACCCTGGCCGTGTACCATGCATGCTAAGCGAATGTGGATGGATGCGTAGG
AGACAGGCCCCTATGCTTTTTTGAGAATCTAGAAGATTAGACCGTGTCGA
GCCCCAGGTTGACGTTGCGATTGTGTCACGGATAGAAACTTGATGAGCGA
TAGTGTATTGAATGTAAAATTAAGCGAAAGACATAAGGATTGCGACGCTG
TGCATACAAGTGATGAGGTGGAAACGCAATATAAATGTGCGTCGACCTTT
TCTTGGGGAGAGCTTCAAGCTCGATGGAAAGTTAAGATATGGCACATTTG
CCGACACGTTGCACCATACATGGACATGTCCAAGCAGCATGTTGCATCTA
GCTGCCATAGCAGCTTCCACGCTCGGGTCATGCCCTCTTTTTGGTTTTTG
GCGTCCTctcaccgcctccgcctgctcctctcgcaatcaccccccccccc
aggagAATCGGAGGTCTTACGCCCGGGctccgtccctttctccatAGAAA
TTTCACATGGACAGCAACGGGAACAACAGTGTTGAGGACGTGGTTCGCTC
CCTGGatgccttcttctcctcctcctcttcctctcccccctcttccgccc
ctcgccccgtcccccttgaCATCGCCGACGGGCTGACATTGCTGTCGCCC
CCTACCGCTGCTGGTGCTACACTCAATTGGGGCATTATGGGAGCGGGCCG
GGTCTCGCATGACTTTGTCCAGGCCCTCAAGGCCCTTCCACAGGCGCGCG
TGGTAGCAGTGGGTGCCAGCACGCTCCCTAAAGCCGAGGCCTTTGCGAGC
ACCCACAAGATACCCGGAGCCCATGGTTCATACGAGGCGTTGGCACGAGA
TCCTGAGGTCCAGATCGTGTACGTGGGGACGCTGCACGCTTTTCACAAGG
TGCGTGTTGTCGCCAAAGAAGAGTCCGGTTGGACAAAAGCACGCTGggca
aagaagagagaaagagagaaaggaggaaggggaaggggcggggtaGAATC
GCTCTGGGACTTTCGCTGGGATGACAAGAGGGTTACTCATCCGACGCTCT
CTTCCGTTTAGGAGCATGCATTGCTTGccttggaggcagggaagcaCGTG
TTGGTGGAGAAGCCAGTGGCCTgccgggcggaggacggggtggtcatggt
ggggcgggcgcgggagaagaagcttCTGTTTCTAGAAGGAATGTGGACAA
GGTTCTTCCCGGTGGTGGAAATGGCCAGATATCTGATCAGTAGTGGGGCT
ATCGGCCGGGTGGTTGCATTGCATGCGGATTTTGGTGCGtttcggggagg
ggaaaggattgTGGGAATCTAGCGTGGAAAGATACCGCGACCGAGGTCGA
TGGTAGTTTGAAGCGAGTGGAAGACAGCGATCTTAATCCTTGTCCTTGCC
TTAACCCTCTCTTGGTGGCTGCAGGCTTTAATTCGTCCGACTCGGAAGGG
TACCCGGATTCCCCTTTCTTCAATCACGtcctgggcgggggagggttgCT
GTTCGTCGGCGTCTACCCCATCTCCATGGCCCCCCTCTGCTTCGGCTCGC
GGATGCCGACTAAAATCGCAGCGGCGGGTGTGGTGGACGCCCCGACTGGG
GTAGATCTCTCGGGGGGCGTCATTTTAGAGtacgagggaggacgggaagg
ggggggattgGCAGTACTGACGTATAACTTGATGGGGGAAACGCCGGAGG
AGACAACGATAGTCggcacggagggaaggatcaAGATACTAGGACCTGCG
CATTGCCCCACGCAAATGGTTCTGTATCGGAAGCACAAAGGTCGCAGAAA
CGTGCAAGCCTTTGATTTTGAATATCCGTTACCGGCGCCGTTACCCGCGG
TGGAGGCAACGGGTGGATTTAATTATCCGAACAGTCAGGGCTTCATGTAC
GAAGCTGCTGCGGCCCAGAGGTGTGTCTTGGCTGGATTAGGCGAGACACC
CCAATACACGATGGAAGAAACCTTAATCGTGGCGAAAATCATGGATGAGG
TGAGAAGACAGTTGGGAGTCCgggcggtcgggggggggggtgaagACGGG
AAGGGCACCAAATGACCCAGCCCCTGATACCGATAAAGGAGTTTAGAGGC
CTTTgagcctgggaggaagaagtgacGGGTGTGGGccaaaaggaaaagag
gtggcgggggcaagggagatGCCGGGGAGAAAGATGGATATTGTGGCCTT
TGGGCCTGAGGAATCACCTCACGATGGATGGTTTTGCACAACAACATATT
TCCTACACGTGC

Coding sequence (CDS) from alignment at CM002455.1:1321807..1324818+

>rna527 ID=rna527|Name=rna527|organism=Nannochloropsis gaditana|type=CDS|length=3771bp|location=Sequence derived from alignment at CM002455.1:1321807..1324818+ (Nannochloropsis gaditana)
ATGGACAGCAACGGGAACAACAGTGTTGAGGACGTGGTTCGCTCCCTGGa
tgccttcttctcctcctcctcttcctctcccccctcttccgcccctcgcc
ccgtcccccttgaCATCGCCGACGGGCTGACATTGCTGTCGCCCCCTACC
GCTGCTGGTGCTACACTCAATTGGGGCATTATGGGAGCGGGCCGGGTCTC
GCATGACTTTGTCCAGGCCCTCAAGGCCCTTCCACAGGCGCGCGTGGTAG
CAGTGGGTGCCAGCACGCTCCCTAAAGCCGAGGCCTTTGCGAGCACCCAC
AAGATACCCGGAGCCCATGGTTCATACGAGGCGTTGGCACGAGATCCTGA
GGTCCAGATCGTGTACGTGGGGACGCTGCACGCTTTTCACAAGGAGCATG
CATTGCTTGccttggaggcagggaagcaCGTGTTGGTGGAGAAGCCAGTG
GCCTgccgggcggaggacggggtggtcatggtggggcgggcgcgggagaa
gaagcttCTGTTTCTAGAAGGAATGTGGACAAGGTTCTTCCCGGTGGTGG
AAATGGCCAGATATCTGATCAGTAGTGGGGCTATCGGCCGGGTGGTTGCA
TTGCATGCGGATTTTGGCTTTAATTCGTCCGACTCGGAAGGGTACCCGGA
TTCCCCTTTCTTCAATCACGtcctgggcgggggagggttgCTGTTCGTCG
GCGTCTACCCCATCTCCATGGCCCCCCTCTGCTTCGGCTCGCGGATGCCG
ACTAAAATCGCAGCGGCGGGTGTGGTGGACGCCCCGACTGGGGTAGATCT
CTCGGGGGGCGTCATTTTAGAGtacgagggaggacgggaaggggggggat
tgGCAGTACTGACGTATAACTTGATGGGGGAAACGCCGGAGGAGACAACG
ATAGTCggcacggagggaaggatcaAGATACTAGGACCTGCGCATTGCCC
CACGCAAATGGTTCTGTATCGGAAGCACAAAGGTCGCAGAAACGTGCAAG
CCTTTGATTTTGAATATCCGTTACCGGCGCCGTTACCCGCGGTGGAGGCA
ACGGGTGGATTTAATTATCCGAACAGTCAGGGCTTCATGTACGAAGCTGC
TGCGGCCCAGAGGTGTGTCTTGGCTGGATTAGGCGAGACACCCCAATACA
CGATGGAAGAAACCTTAATCGTGGCGAAAATCATGGATGAGGTGAGAAGA
CAGTTGGGAGTCCgggcggtcgggggggggggtgaagACGGGAAGGGCAC
CAAATGAATGGACAGCAACGGGAACAACAGTGTTGAGGACGTGGTTCGCT
CCCTGGatgccttcttctcctcctcctcttcctctcccccctcttccgcc
cctcgccccgtcccccttgaCATCGCCGACGGGCTGACATTGCTGTCGCC
CCCTACCGCTGCTGGTGCTACACTCAATTGGGGCATTATGGGAGCGGGCC
GGGTCTCGCATGACTTTGTCCAGGCCCTCAAGGCCCTTCCACAGGCGCGC
GTGGTAGCAGTGGGTGCCAGCACGCTCCCTAAAGCCGAGGCCTTTGCGAG
CACCCACAAGATACCCGGAGCCCATGGTTCATACGAGGCGTTGGCACGAG
ATCCTGAGGTCCAGATCGTGTACGTGGGGACGCTGCACGCTTTTCACAAG
GAGCATGCATTGCTTGccttggaggcagggaagcaCGTGTTGGTGGAGAA
GCCAGTGGCCTgccgggcggaggacggggtggtcatggtggggcgggcgc
gggagaagaagcttCTGTTTCTAGAAGGAATGTGGACAAGGTTCTTCCCG
GTGGTGGAAATGGCCAGATATCTGATCAGTAGTGGGGCTATCGGCCGGGT
GGTTGCATTGCATGCGGATTTTGGCTTTAATTCGTCCGACTCGGAAGGGT
ACCCGGATTCCCCTTTCTTCAATCACGtcctgggcgggggagggttgCTG
TTCGTCGGCGTCTACCCCATCTCCATGGCCCCCCTCTGCTTCGGCTCGCG
GATGCCGACTAAAATCGCAGCGGCGGGTGTGGTGGACGCCCCGACTGGGG
TAGATCTCTCGGGGGGCGTCATTTTAGAGtacgagggaggacgggaaggg
gggggattgGCAGTACTGACGTATAACTTGATGGGGGAAACGCCGGAGGA
GACAACGATAGTCggcacggagggaaggatcaAGATACTAGGACCTGCGC
ATTGCCCCACGCAAATGGTTCTGTATCGGAAGCACAAAGGTCGCAGAAAC
GTGCAAGCCTTTGATTTTGAATATCCGTTACCGGCGCCGTTACCCGCGGT
GGAGGCAACGGGTGGATTTAATTATCCGAACAGTCAGGGCTTCATGTACG
AAGCTGCTGCGGCCCAGAGGTGTGTCTTGGCTGGATTAGGCGAGACACCC
CAATACACGATGGAAGAAACCTTAATCGTGGCGAAAATCATGGATGAGGT
GAGAAGACAGTTGGGAGTCCgggcggtcgggggggggggtgaagACGGGA
AGGGCACCAAATGAATGGACAGCAACGGGAACAACAGTGTTGAGGACGTG
GTTCGCTCCCTGGatgccttcttctcctcctcctcttcctctcccccctc
ttccgcccctcgccccgtcccccttgaCATCGCCGACGGGCTGACATTGC
TGTCGCCCCCTACCGCTGCTGGTGCTACACTCAATTGGGGCATTATGGGA
GCGGGCCGGGTCTCGCATGACTTTGTCCAGGCCCTCAAGGCCCTTCCACA
GGCGCGCGTGGTAGCAGTGGGTGCCAGCACGCTCCCTAAAGCCGAGGCCT
TTGCGAGCACCCACAAGATACCCGGAGCCCATGGTTCATACGAGGCGTTG
GCACGAGATCCTGAGGTCCAGATCGTGTACGTGGGGACGCTGCACGCTTT
TCACAAGGAGCATGCATTGCTTGccttggaggcagggaagcaCGTGTTGG
TGGAGAAGCCAGTGGCCTgccgggcggaggacggggtggtcatggtgggg
cgggcgcgggagaagaagcttCTGTTTCTAGAAGGAATGTGGACAAGGTT
CTTCCCGGTGGTGGAAATGGCCAGATATCTGATCAGTAGTGGGGCTATCG
GCCGGGTGGTTGCATTGCATGCGGATTTTGGCTTTAATTCGTCCGACTCG
GAAGGGTACCCGGATTCCCCTTTCTTCAATCACGtcctgggcgggggagg
gttgCTGTTCGTCGGCGTCTACCCCATCTCCATGGCCCCCCTCTGCTTCG
GCTCGCGGATGCCGACTAAAATCGCAGCGGCGGGTGTGGTGGACGCCCCG
ACTGGGGTAGATCTCTCGGGGGGCGTCATTTTAGAGtacgagggaggacg
ggaaggggggggattgGCAGTACTGACGTATAACTTGATGGGGGAAACGC
CGGAGGAGACAACGATAGTCggcacggagggaaggatcaAGATACTAGGA
CCTGCGCATTGCCCCACGCAAATGGTTCTGTATCGGAAGCACAAAGGTCG
CAGAAACGTGCAAGCCTTTGATTTTGAATATCCGTTACCGGCGCCGTTAC
CCGCGGTGGAGGCAACGGGTGGATTTAATTATCCGAACAGTCAGGGCTTC
ATGTACGAAGCTGCTGCGGCCCAGAGGTGTGTCTTGGCTGGATTAGGCGA
GACACCCCAATACACGATGGAAGAAACCTTAATCGTGGCGAAAATCATGG
ATGAGGTGAGAAGACAGTTGGGAGTCCgggcggtcgggggggggggtgaa
gACGGGAAGGGCACCAAATGA

Synonyms

Publications