rna5263, rna5263 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5263
Unique Name	rna5263
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	798
Alignment location	CM002465.1:561105..562127 -

Link to JBrowse

Properties


Property Name	Value
Product	adp atp
Orig transcript id	gnl\|cribi\|Naga_100005g52.6737.mrna
Orig protein id	gnl\|cribi\|Naga_100005g52.6737
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:561105..562127 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g52	gene5083	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25443.1	cds5250	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5263	rna5263-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:561105..562127-
coding sequence from alignment at CM002465.1:561105..562127-

mRNA sequence

>rna5263 ID=rna5263|Name=rna5263|organism=Nannochloropsis gaditana|type=mRNA|length=798bp
ATGTACGCGGGATTGTCAACCATGCCACTGCATTCAAGACTATGCTGGAG
TCTCGTCACAATGCTGGCCCTGGGTATACTAGCAACTTTTCCCACCCATT
CAAAAGCTTACACACTTGCCAATCTCAGTCGACTGCCAGCTCACAAGAAG
TGTGGAGCCTTTTTTCCCCGGCGACCTCTCGTGGACAGGGATCTCAGTCG
GTCTCAAGTGCTCTCAGGAGGTATTTCGGCCATATCAGGATCTTTCTTGG
TATGTTTGGGTGCTTCTTTTCTTCAAATTAAGCCTGTGATCGCTGCCGAT
GAAGGGAGTGGAGACAAGGGCTCTCCCACGTTCGTCACCTGCGCCTCTTC
GAGCGGGATCTTTCGATTTTTGTACCCAGAGACCTGGACATCTGCGCCTA
AACTTCTTCAGACGCATCAAGAGGAGGTAACTCTAAAAAGCAAAAATGTC
CTTGGATTTTCTGCTGGCGTTGCGGTTGATCCGGTCCGCATCGAGAGCAT
CCAACAAAGCGGCAGCCCCAGTGAAGTTGGAGCTCGCATTGTCGCCTTGG
AAGGCAAAAAGGAAGGGGTTTCTAAGGTGGAGCTGTTGGGCAGCGCCCAA
GAAGGAGACTTTTACACCTTTGATTATGAGGTAGAGTCTACGCGGGGACG
CAACCGATTCCTTGCCAGGGCTATAGTTGCTGACAAGAAGCTGATAGTTT
TTACGATTCAGATTCCAATGGATGCTTACGAGGCCAATGAGGCGACCATT
TCGCGGATGCTCCAATCACTGCAGGTCAACGAGACGAACGGGAAATGA

protein sequence of rna5263

>rna5263-protein ID=rna5263-protein|Name=rna5263|organism=Nannochloropsis gaditana|type=polypeptide|length=340bp
MSYIAGRRASSRHSVSFTSKMQTPISNVHAKMMALSEKKAKTWNDVLIDW
MAGGIAAGVSKTAVAPIERVKLLLQTQDANPKIASGEVPRYSGVVNVLVR
VSKEQGVSALWRGNAANVLRYFPTQAFNFAFKDTFKAMFPKYDPQTQFWA
FFGSNMAAGGLAGAASLLIVYPLDFARTRLAADLGKDGAREFNGLLDCLG
KVAKASGPLALYQGFGVSVQGIIVYRGAYFGLYDTAKGALFKDEKNAGIL
YRWAIAQAVTAAAGIVSYPLDTIRRRLMMQAGGKKLYDGTLDCISKIIKN
EGPKAFFKGAWSNVLRGAGGALVLVFYDEIKKALGGKSSD

mRNA from alignment at CM002465.1:561105..562127-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5263 ID=rna5263|Name=rna5263|organism=Nannochloropsis gaditana|type=mRNA|length=1023bp|location=Sequence derived from alignment at CM002465.1:561105..562127- (Nannochloropsis gaditana)
ATGTCTTATATCGCAGGCCGACGCGCTTCTAGCCGCCACTCCGTCTCCTT
CACGTCAAAGATGCAGACTCCTATCAGCAATGTTCATGCCAAGATGATGG
CCTTGTCTGAGAAGAAGGCCAAAACTTGGAACGATGTTCTCATTGATTGG
ATGGCAGGCGGAATCGCAGCTGGGGTCTCCAAAACGGCGGTGGCTCCTAT
CGAACGTGTCAAGCTCTTGCTGCAGACACAAGATGCCAACCCCAAGATTG
CCTCCGGGGAGGTGCCCCGCTATTCGGGCGTGGTGAACGTGTTGGTGCGC
GTGTCAAAAGAACAGGGCGTCAGTGCCCTGTGGCGCGGAAACGCGGCAAA
TGTCTTGCGTTATTTTCCTACCCAAGCGTTCAACTTCGCGTTTAAGGATA
CCTTTAAGGCCATGTTCCCCAAGTACGACCCGCAGACTCAGTTTTGGGCT
TTCTTTGGCTCAAACATGGCAGCGGGCGGTCTTGCCGGTGCAGCTTCCCT
GCTGATCGTCTACCCGCTTGATTTTGCACGAACTCGTCTCGCAGCGGATC
TCGGTAAAGATGGCGCCCGCGAGTTCAACGGCCTGCTGGATTGCCTGGGG
AAGGTCGCCAAGGCGAGCGGGCCTCTCGCCCTCTACCAGGGATTCGGTGT
GTCCGTGCAGGGCATCATTGTCTACCGCGGGGCTTACTTCGGACTCTATG
ATACTGCCAAGGGCGCGCTCTTCAAGGACGAGAAGAACGCTGGCATCCTC
TACCGGTGGGCAATTGCGCAGGCCGTGACGGCGGCGGCGGGTATCGTCTC
GTATCCACTTGATACTATTCGCCGTCGCCTCATGATGCAGGCCGGCGGAA
AAAAACTGTACGATGGAACACTTGACTGCATTAGTAAGATCATCAAAAAT
GAGGGACCCAAGGCGTTCTTTAAGGGTGCCTGGTCTAACGTTCTTCGCGG
GGCAGGCGGAGCTCTTGTCCTGGTCTTCTACGACGAGATCAAGAAGGCTC
TCGGTGGCAAGTCATCTGATTAA

Coding sequence (CDS) from alignment at CM002465.1:561105..562127-

>rna5263 ID=rna5263|Name=rna5263|organism=Nannochloropsis gaditana|type=CDS|length=1023bp|location=Sequence derived from alignment at CM002465.1:561105..562127- (Nannochloropsis gaditana)
ATGTCTTATATCGCAGGCCGACGCGCTTCTAGCCGCCACTCCGTCTCCTT
CACGTCAAAGATGCAGACTCCTATCAGCAATGTTCATGCCAAGATGATGG
CCTTGTCTGAGAAGAAGGCCAAAACTTGGAACGATGTTCTCATTGATTGG
ATGGCAGGCGGAATCGCAGCTGGGGTCTCCAAAACGGCGGTGGCTCCTAT
CGAACGTGTCAAGCTCTTGCTGCAGACACAAGATGCCAACCCCAAGATTG
CCTCCGGGGAGGTGCCCCGCTATTCGGGCGTGGTGAACGTGTTGGTGCGC
GTGTCAAAAGAACAGGGCGTCAGTGCCCTGTGGCGCGGAAACGCGGCAAA
TGTCTTGCGTTATTTTCCTACCCAAGCGTTCAACTTCGCGTTTAAGGATA
CCTTTAAGGCCATGTTCCCCAAGTACGACCCGCAGACTCAGTTTTGGGCT
TTCTTTGGCTCAAACATGGCAGCGGGCGGTCTTGCCGGTGCAGCTTCCCT
GCTGATCGTCTACCCGCTTGATTTTGCACGAACTCGTCTCGCAGCGGATC
TCGGTAAAGATGGCGCCCGCGAGTTCAACGGCCTGCTGGATTGCCTGGGG
AAGGTCGCCAAGGCGAGCGGGCCTCTCGCCCTCTACCAGGGATTCGGTGT
GTCCGTGCAGGGCATCATTGTCTACCGCGGGGCTTACTTCGGACTCTATG
ATACTGCCAAGGGCGCGCTCTTCAAGGACGAGAAGAACGCTGGCATCCTC
TACCGGTGGGCAATTGCGCAGGCCGTGACGGCGGCGGCGGGTATCGTCTC
GTATCCACTTGATACTATTCGCCGTCGCCTCATGATGCAGGCCGGCGGAA
AAAAACTGTACGATGGAACACTTGACTGCATTAGTAAGATCATCAAAAAT
GAGGGACCCAAGGCGTTCTTTAAGGGTGCCTGGTCTAACGTTCTTCGCGG
GGCAGGCGGAGCTCTTGTCCTGGTCTTCTACGACGAGATCAAGAAGGCTC
TCGGTGGCAAGTCATCTGATTAA

Synonyms

Publications