rna5257, rna5257 (mRNA) Nannochloropsis gaditana

Overview
Namerna5257
Unique Namerna5257
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length441
Alignment locationCM002465.1:548327..548694 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g45.6667.mrna
Orig protein idgnl|cribi|Naga_100005g45.6667
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:548327..548694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g45gene5077Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5257rna5257-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25373.1cds5244Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5257 ID=rna5257|Name=rna5257|organism=Nannochloropsis gaditana|type=mRNA|length=441bp
ATGGCAACAGAGGGTGGGACTTTTGCCAATGGCTTGAACGACCTGCTGGT
CTATCAGCCGACGACTGCGCGCTACCTGATGAAGAAACAAGCACGAGAGA
GCCTCTTGCACAGTTCTTGTCCTTTGATCTCTGAATTTCACACAAAAATC
ACATGGGAATGCACAACACTTTCCGGGGTCATAAAGGGACGAAGATGGAG
GACAAGGAGGCTACGAGACACATCCATAGGAAAAGTATGTGCAAAACCCA
GCAAGGATCCAGCAGCCAGGAAGGAGGAGATAGACAAAAGAGTCGCCGCG
AGACGGCAGACCACTGCTACAGGAGTTGAGAAAGAAATGAATGAACAAGA
GGAGACAAGCAAACACGCGGTAGAGCGCAGGAAAACGAGCGGGATACGGG
CTTCGAAAGCATGTTATCCACAAGGAGCACTTGTCTTGTGA
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protein sequence of rna5257

>rna5257-protein ID=rna5257-protein|Name=rna5257|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MCINGMLFGRPMDTSLRKQYLSANGRCPLSICIFGRDTRLIPSLSKGNDK
WTHFSSSAMMARSLNKKDSYSWVLNQVNIGSYRDFLVSNLHFILLLRE
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mRNA from alignment at CM002465.1:548327..548694+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5257 ID=rna5257|Name=rna5257|organism=Nannochloropsis gaditana|type=mRNA|length=368bp|location=Sequence derived from alignment at CM002465.1:548327..548694+ (Nannochloropsis gaditana)
ATGTGTATAAATGGAATGTTGTTTGGCAGGCCCATGGACACATCTTTACG
GAAACAATATTTGTCAGCGAATGGAAGATGCCCATTGAGTATTTGCATCT
TTGGACGGGACACAAGACTCATCCCGTCACTTAGTAAGGGAAACGACAAA
TGGACACACTTCTCGAGCAGTGCCATGATGGCTCGTTCGCTTAATAAAAA
GGACAGTTATTCATGGGTTTTAAACCAAGTGAATGTGTATGCTTGGCAGG
GATGCTGAGTCATGTGGAATTAAGCAGGGCACTGTCATAATCGACGCCAC
GTGAGATAGGCTCGTATCGTGATTTCCTCGTGTCGAATCTGCATTTCATC
CTGCTTTTGAGAGAATGA
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Coding sequence (CDS) from alignment at CM002465.1:548327..548694+

>rna5257 ID=rna5257|Name=rna5257|organism=Nannochloropsis gaditana|type=CDS|length=594bp|location=Sequence derived from alignment at CM002465.1:548327..548694+ (Nannochloropsis gaditana)
ATGTGTATAAATGGAATGTTGTTTGGCAGGCCCATGGACACATCTTTACG
GAAACAATATTTGTCAGCGAATGGAAGATGCCCATTGAGTATTTGCATCT
TTGGACGGGACACAAGACTCATCCCGTCACTTAGTAAGGGAAACGACAAA
TGGACACACTTCTCGAGCAGTGCCATGATGGCTCGTTCGCTTAATAAAAA
GGACAGTTATTCATGGGTTTTAAACCAAGTGAATATAGGCTCGTATCGTG
ATTTCCTCGTGTCGAATCTGCATTTCATCCTGCTTTTGAGAGAATGAATG
TGTATAAATGGAATGTTGTTTGGCAGGCCCATGGACACATCTTTACGGAA
ACAATATTTGTCAGCGAATGGAAGATGCCCATTGAGTATTTGCATCTTTG
GACGGGACACAAGACTCATCCCGTCACTTAGTAAGGGAAACGACAAATGG
ACACACTTCTCGAGCAGTGCCATGATGGCTCGTTCGCTTAATAAAAAGGA
CAGTTATTCATGGGTTTTAAACCAAGTGAATATAGGCTCGTATCGTGATT
TCCTCGTGTCGAATCTGCATTTCATCCTGCTTTTGAGAGAATGA
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Synonyms
Publications