rna5256, rna5256 (mRNA) Nannochloropsis gaditana

Overview
Namerna5256
Unique Namerna5256
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2502
Alignment locationCM002465.1:547462..548273 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g44.6717.mrna
Orig protein idgnl|cribi|Naga_100005g44.6717
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:547462..548273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g44gene5076Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5256rna5256-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25423.1cds5243Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5256 ID=rna5256|Name=rna5256|organism=Nannochloropsis gaditana|type=mRNA|length=2502bp
ATGGACGCGCAAGCTGAAGGCAGAAATTCACTGGCTGGTCCTCGAGCCTC
GATCGACCAATATACTTACCCATCCACATCAGAGTGGCCTCTCCTTTGGG
CAGACCATTTCATATTTTATATATATATATATATCCATTCTAATCGCAAA
GCAATTTTGGGCTTCACAGGACCAGCTCTATGTTTTTTTTCAAGAGCAGT
GAAAGACAAATATGAAAATGAAGAACTAATCCGCTTCGGATTGCCAGAAG
ATGTCTGGTTCCACGTTGATGACTTGTCATCAGCGCACGTGTACTTGCGT
CAGAAGCCTGGACAAAAGCTGGACGACATCAGCTCTGACCTGCTGCACGA
GTGCTCCTCTCTCGTCAAGGCAAACTCCATCGAGGGGTGCAAGATGAAGG
AAGTGAAGGTCGTATATACCCGTTGGCGCAACTTAAAGAAGACCAAAAGT
ATGGAAGCAGGCCAGATCGGCTTCCATGACCCCAGCAAGGTCCGGACCAT
CAAGGTTCAGAAGTGTAATTCGATTGTCAATGCGCTCAACAAGACTAAAG
AAGAGAGGTATCCTGACCTACAGGCTGAGCAAGAGGCTCGAGCTGTCGAA
TACAGAGCAGCTCAGAAGGCATCAAAGCGCGATCAAGAAAAACAGGAGAG
AGAGGAGAAGAAGAGACGAGAAGAAGAGGCCAAACTACGAAGCTATGAGA
GTCTCATGAATGACGGGGGAATGGAATCCAACAAGAAATGGGGTTCAACA
GCAGACGTGTCGGCCGCGCTTCTTTTGAAAACCTTTGGTCTTACTGACAA
CCAAGATATGCCGCGAGTGCCCATGTGGCTGCATATCATATGCAGCTTTA
TGTTTTGTGGAGCTTCGATGGGATGGGTGGCGCGTGGCCTGGTTTCCAAG
CACGATAAACCTTCGTGCCTGGTTAATAGGAATCCGACGGCGCGGAAGCC
GAAGCAGCTTCCATTATTTCCTGCTCCTGTGGTTTCTGAATCGTCACAAA
CACATTTTTTACGCAGCAATGCACAATTCTCGGCAAAGGAAACTATTGAG
TGCTCCAATAGCGCAATGAAGCCTATCGTGTGTGACGTAGCTATCGTAGG
TGGGGGCCCGGCTGGGTCTGTCATGGCAGCTTTACTTGCACAGCAGCATG
AACTCAAAGTAGTAATGATGGATCCCAAGTTAGATCAACGGTGGATCCCC
AACTATGGTGTTTGGGTCGAGGAATGGGAAGCTCTTGAGAAACTTCTAGG
TTTCAGTTTAAGAAGCTGCTTGATGAAGACTTGGCCTAATACTGATTTAT
TTTGTGGTGGCAGCCATGGTATTCCGGTAGACGAGCGGTTGCGAATAAAG
AGGGCCTACGGCAGGGTCGACCGGACGGCGCTTAAAAATGAGCTGCGAAC
ACGCGCTTTGGATGGCGGCGCAATCTTGCTGGCGAAAGCATTGGATGCGG
AGTCAGTGGTTCACGATGAGGAAGGATCACTCCTTCGTCTTGACGATGGG
ACTCGTGTAAGGGCACGCTTTCTACTTGATTGTTCAGGCTACCAATCTCG
GTTGGTTACGCTTGATGGAACTCATGATCCTGGTGTGCAGATTGCCTACG
GAATAGAGTGCGAGGTTGACATGTGCCCATACGGAGAGGACGCAATGACG
TTGATGGATTACCGCACCGACTATCTCGACAATCAGGCGGCCGAGGTGCA
GATGACGGCTGCCCGCGAGCCAACCTTCATGTATGCCATGCCCATGGGTC
CAACGAGGGACGGCAAAAAGACAAAAGTTTTCTTCGAGGAAACTTCGCTG
GTTGCCAGACCGCCGATGTCTTTTGACGAGTGCAAAAAGCGGATGGAGCT
TCGGTTGAAACATTTGGGTGCCACAGTACTCAATGTGGAAGAAGAGGAGT
TTTGTTACATTCCCATGGGTGGAGCAATACCTGTCCGCTCTCAACGAGTC
GTGGCATTCGGAGGGGCGATGGGCCTCGTTCATGCAGCGACAGGATATCA
GATATGCAGGTCGATGGCTGCTGCCGGGCCTACAGCGAAGGCGATCGCTG
ACGAGCTCAAGAAGGCTTCATACAACCCGGATGCTGCCGCGCGGGCGGTC
TACGATTCTGTGTGGACTCGGACCACACGGCTACAGCGGGATTTTGTCAT
TTTTGGCGGGGAATTCCTTATGGCGCAACACGCTGATAATTTGCGTGGAT
TTTTTGACTCTTTCTTTCGTTTACCCTCGCTAATGTGGACGGGATTTTTG
GCGGGATGGCCGGGTCTACCAAATAACGAACAACACGAGACCTGGGATAA
GCGTCTTGAGTTTGGTATTAGTTTGTGGCTTTTAGCTCCACTCAGTCTTA
AGTTAGCACTTGCTGCAGCAGGCGTTACGAAGGGAGGTTTACCTTTTATT
CGATCCGTCACCCCACTGGCTGACTTGCCGTCGTTTTTTGAATTAGAGAA
GACCGGAATGTCGGACAGGTCTGAGTTGATGAAGTTTGATAGCATAAGCT
GA
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protein sequence of rna5256

>rna5256-protein ID=rna5256-protein|Name=rna5256|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MATEGGTFANGLNDLLVYQPTTARYLMKKQARESLLHSSCPLISEFHTKI
TWECTTLSGVIKGRRWRTRRLRDTSIGKVCAKPSKDPAARKEEIDKRVAA
RRQTTATGVEKEMNEQEETSKHAVERRKTSGIRASKACYPQGALVL
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mRNA from alignment at CM002465.1:547462..548273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5256 ID=rna5256|Name=rna5256|organism=Nannochloropsis gaditana|type=mRNA|length=812bp|location=Sequence derived from alignment at CM002465.1:547462..548273+ (Nannochloropsis gaditana)
ATGGCAACAGAGGGTGGGACTTTTGCCAATGGCTTGAACGACCTGCTGGT
CTATCAGCCGACGACTGCGCGCTACCTGATGAAGAAACAAGCACGAGAGA
GCCTCTTGCACAGTTCTTGTCCTTTGATCTCTGAATTTCACACAAAAATC
ACATGGGAATGCACAACACTTTCCGGGGTCATGTCCCTTATTCTCTGACA
TCACGCTGAGCGTTCGGTAAAGGAGGGCAGACCCACGTTTTAACAAGTAG
GCGATGGCCCAATCGATCGCTGCCTCGACTCTTCGATCTTAAAACGCGAA
TTTTGCATACGGCAGAAAGGGACGAagatggaggacaaggaggctACGAG
ACACATCCATAGGAAAAGTATGTGCAAAACCCAGCAAGGATCCAGcagcc
aggaaggaggagatagacAAAAGAGTCGCCGCGAGACGGCAGACCACTGC
TACAGGAGGTAAGAACTTGAAGCCCGGACATGTTTTCTAGTTGTCCTGCA
ATAGACCGCAGCTACTCTGACAGGAGAAAACTTTCATCGTACATGTAGTT
GAGAAAGAAATGAATGAACAAGAGGAGACAAGCAAACACGCGGTAGAGCG
CAGGAAAACGAGCGGGTAAGCAACGGGGATTCGGGTGGTATTAACGCAGA
GAGCGGCAAGCCACACTGACAGTCGTAGGCGGCGTGTGAATCATGAGTGA
AAATTACAAATGTGATGTCTGGATAGGCATCAGTAATTTGCCATGTCGTT
TATAAATGTATAGGATACGGGCTTCGAAAGCATGTTATCCACAAGGAGCA
CTTGTCTTGTGA
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Coding sequence (CDS) from alignment at CM002465.1:547462..548273+

>rna5256 ID=rna5256|Name=rna5256|organism=Nannochloropsis gaditana|type=CDS|length=1764bp|location=Sequence derived from alignment at CM002465.1:547462..548273+ (Nannochloropsis gaditana)
ATGGCAACAGAGGGTGGGACTTTTGCCAATGGCTTGAACGACCTGCTGGT
CTATCAGCCGACGACTGCGCGCTACCTGATGAAGAAACAAGCACGAGAGA
GCCTCTTGCACAGTTCTTGTCCTTTGATCTCTGAATTTCACACAAAAATC
ACATGGGAATGCACAACACTTTCCGGGGTCATAAAGGGACGAagatggag
gacaaggaggctACGAGACACATCCATAGGAAAAGTATGTGCAAAACCCA
GCAAGGATCCAGcagccaggaaggaggagatagacAAAAGAGTCGCCGCG
AGACGGCAGACCACTGCTACAGGAGTTGAGAAAGAAATGAATGAACAAGA
GGAGACAAGCAAACACGCGGTAGAGCGCAGGAAAACGAGCGGGATACGGG
CTTCGAAAGCATGTTATCCACAAGGAGCACTTGTCTTGTGAATGGCAACA
GAGGGTGGGACTTTTGCCAATGGCTTGAACGACCTGCTGGTCTATCAGCC
GACGACTGCGCGCTACCTGATGAAGAAACAAGCACGAGAGAGCCTCTTGC
ACAGTTCTTGTCCTTTGATCTCTGAATTTCACACAAAAATCACATGGGAA
TGCACAACACTTTCCGGGGTCATAAAGGGACGAagatggaggacaaggag
gctACGAGACACATCCATAGGAAAAGTATGTGCAAAACCCAGCAAGGATC
CAGcagccaggaaggaggagatagacAAAAGAGTCGCCGCGAGACGGCAG
ACCACTGCTACAGGAGTTGAGAAAGAAATGAATGAACAAGAGGAGACAAG
CAAACACGCGGTAGAGCGCAGGAAAACGAGCGGGATACGGGCTTCGAAAG
CATGTTATCCACAAGGAGCACTTGTCTTGTGAATGGCAACAGAGGGTGGG
ACTTTTGCCAATGGCTTGAACGACCTGCTGGTCTATCAGCCGACGACTGC
GCGCTACCTGATGAAGAAACAAGCACGAGAGAGCCTCTTGCACAGTTCTT
GTCCTTTGATCTCTGAATTTCACACAAAAATCACATGGGAATGCACAACA
CTTTCCGGGGTCATAAAGGGACGAagatggaggacaaggaggctACGAGA
CACATCCATAGGAAAAGTATGTGCAAAACCCAGCAAGGATCCAGcagcca
ggaaggaggagatagacAAAAGAGTCGCCGCGAGACGGCAGACCACTGCT
ACAGGAGTTGAGAAAGAAATGAATGAACAAGAGGAGACAAGCAAACACGC
GGTAGAGCGCAGGAAAACGAGCGGGATACGGGCTTCGAAAGCATGTTATC
CACAAGGAGCACTTGTCTTGTGAATGGCAACAGAGGGTGGGACTTTTGCC
AATGGCTTGAACGACCTGCTGGTCTATCAGCCGACGACTGCGCGCTACCT
GATGAAGAAACAAGCACGAGAGAGCCTCTTGCACAGTTCTTGTCCTTTGA
TCTCTGAATTTCACACAAAAATCACATGGGAATGCACAACACTTTCCGGG
GTCATAAAGGGACGAagatggaggacaaggaggctACGAGACACATCCAT
AGGAAAAGTATGTGCAAAACCCAGCAAGGATCCAGcagccaggaaggagg
agatagacAAAAGAGTCGCCGCGAGACGGCAGACCACTGCTACAGGAGTT
GAGAAAGAAATGAATGAACAAGAGGAGACAAGCAAACACGCGGTAGAGCG
CAGGAAAACGAGCGGGATACGGGCTTCGAAAGCATGTTATCCACAAGGAG
CACTTGTCTTGTGA
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Synonyms
Publications