rna5254, rna5254 (mRNA) Nannochloropsis gaditana

Overview
Namerna5254
Unique Namerna5254
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length261
Alignment locationCM002465.1:541385..542086 +

Link to JBrowse

Properties
Property NameValue
ProductE2F-associated phosphoprotein
Orig transcript idgnl|cribi|Naga_100005g42.6755.mrna
Orig protein idgnl|cribi|Naga_100005g42.6755
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:541385..542086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g42gene5074Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5254rna5254-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25461.1cds5241Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5254 ID=rna5254|Name=rna5254|organism=Nannochloropsis gaditana|type=mRNA|length=261bp
ATGGGCCGTGAAGGAGGTAACTCAGCGTCGTCCTGCCCTCGCCCTGCTCT
CCTAACACTTGTTCTATCACAAGATCCTGAAAGCTTTCAACACTTGAGAT
CGAGAGCTCCTCCCGTGATCCCGACAAAGATCGCACTGCTGTTGTGGACG
ATCTATATGATGAGGATGCGGATGGAGCAGACCAGAGATGGATTGACAAG
CACTGGGCACGAACGAGGCACGGAAAGTTGTCGGCAGAGCAGCGGACAGA
TGCAACTTTGA
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protein sequence of rna5254

>rna5254-protein ID=rna5254-protein|Name=rna5254|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MSEVCGEVSIAIHAIGKIQECFLSFSVTFIRRKLGARVFKLCVAADLLHV
HFIVSGWVTFCFLLFSIDACIHCLRPSRALYHRYSKSTQTCLTAIRLGFI
KFEERLKLVPPYNSFNDPARHRTRKIEYRAIFVSNCVFGRALNSGDWFQN
RSQVSTEAPFRSSATLTMKSEGRGDCMTSADAVPKKQESERTEVNSQGEQ
PPAQTVACATCGTLLGVQDEEDIVHFLNVIASH
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mRNA from alignment at CM002465.1:541385..542086+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5254 ID=rna5254|Name=rna5254|organism=Nannochloropsis gaditana|type=mRNA|length=702bp|location=Sequence derived from alignment at CM002465.1:541385..542086+ (Nannochloropsis gaditana)
ATGTCAGAGGTCTGTGGGGAAGTAAGCATTGCGATTCATGCGATTGGTAA
AATTCAAGAATGCTTCCTGAGTTTTTCTGTCACATTCATACGTCGGAAGT
TGGGTGCCAGAGTTTTCAAGCTGTGCGTCGCGGCCGATCTGCTTCATGTT
CATTTTATCGTATCAGGATGGGTCACATTTTGTTTTTTACTTTTTTCTAT
AGATGCATGTATCCATTGTCTTCGCCCATCAAGAGCTTTGTATCATAGAT
ATAGTAAGAGTACGCAGACTTGTCTTACTGCTATACGTCTAGGTTTTATA
AAGTTTGAAGAGCGACTCAAGCTCGTTCCTCCTTACAATTCTTTCAATGA
TCCCGCCAGACACAGGACACGAAAAATAGAATATCGTGCCATCTTCGTGT
CAAACTGTGTCTTTGGAAGGGCTCTGAACTCGGGCGACTGGTTTCAAAAT
AGAAGTCAAGTGAGCACGGAGGCGCCCTTTCGATCAAGTGCTACACTGAC
AATGAAAtcagaaggacgaggagattgCATGACTAGTGCGGATGCGGTGC
CGAAAAAGCAGGAGTCTGAACGAACGGAAGTAAATTCGCAAGGCGAACAA
CCCCCGGCACAAACCGTCGCATGCGCTACCTGCGGTACGCTTCTCGGGGT
tcaagacgaagaggacatTGTCCATTTCTTGAATGTTATTGCTTCGCACT
AA
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Coding sequence (CDS) from alignment at CM002465.1:541385..542086+

>rna5254 ID=rna5254|Name=rna5254|organism=Nannochloropsis gaditana|type=CDS|length=702bp|location=Sequence derived from alignment at CM002465.1:541385..542086+ (Nannochloropsis gaditana)
ATGTCAGAGGTCTGTGGGGAAGTAAGCATTGCGATTCATGCGATTGGTAA
AATTCAAGAATGCTTCCTGAGTTTTTCTGTCACATTCATACGTCGGAAGT
TGGGTGCCAGAGTTTTCAAGCTGTGCGTCGCGGCCGATCTGCTTCATGTT
CATTTTATCGTATCAGGATGGGTCACATTTTGTTTTTTACTTTTTTCTAT
AGATGCATGTATCCATTGTCTTCGCCCATCAAGAGCTTTGTATCATAGAT
ATAGTAAGAGTACGCAGACTTGTCTTACTGCTATACGTCTAGGTTTTATA
AAGTTTGAAGAGCGACTCAAGCTCGTTCCTCCTTACAATTCTTTCAATGA
TCCCGCCAGACACAGGACACGAAAAATAGAATATCGTGCCATCTTCGTGT
CAAACTGTGTCTTTGGAAGGGCTCTGAACTCGGGCGACTGGTTTCAAAAT
AGAAGTCAAGTGAGCACGGAGGCGCCCTTTCGATCAAGTGCTACACTGAC
AATGAAAtcagaaggacgaggagattgCATGACTAGTGCGGATGCGGTGC
CGAAAAAGCAGGAGTCTGAACGAACGGAAGTAAATTCGCAAGGCGAACAA
CCCCCGGCACAAACCGTCGCATGCGCTACCTGCGGTACGCTTCTCGGGGT
tcaagacgaagaggacatTGTCCATTTCTTGAATGTTATTGCTTCGCACT
AA
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Synonyms
Publications