rna5253, rna5253 (mRNA) Nannochloropsis gaditana

Overview
Namerna5253
Unique Namerna5253
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3402
Alignment locationCM002465.1:540671..541350 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g41.6652.mrna
Orig protein idgnl|cribi|Naga_100005g41.6652
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:540671..541350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g41gene5073Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5253rna5253-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25358.1cds5240Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5253 ID=rna5253|Name=rna5253|organism=Nannochloropsis gaditana|type=mRNA|length=3402bp
CGGCACAAGATCTAGGAGGGGCAGAATATGTCCGCTGAAGACAAGCAAGG
ACGAAGATGTGGCTTGACGTGCACTGACCTCACGTCGCCATCGACACCAA
AGCGCTCTCCAAGTTCGATCACTGGGCAGCACAAATTGCAAAAAGCTGCT
AGAATTGTGCAGATGTGGTGGCGAAGATATCGTGCGATCGGTAAAATAGC
TGTTTACCTAACCACGCAAGCCTCTCAATTAAGACAGGCTAATGAGGTAT
TGATGCTGAAATCAAGTACCGGATTTGAGGACGTCCTTAGCAAGATCAGA
GACAAAAATATTATAGCGAGCATCGCATGTCTCTTGAATGCCGTGTCAAT
CCAGGGGCCTGACAAAAAGAGGGGCTCCCCTGGGATGGAAGACTCACAAC
AGTTCTTCCATCGGGTTCAGGAGCAGCAGGCGCGCAAAATTTTGACCGCA
GTTATGATCAAATTGCATCCTGGAGATGTCATAACGACAGATCCATATAC
GTGCAGCAAAGACCATGGTGAAGAAATGGGTATGGCGGAGTTGGAAGCCC
AACTCGTATGCATTGCCGCAAATCTGGTTTTGGATTCAGCGAGCTGCCTC
ATAAACATGCTGGGTGACCTGGAGACAGGTTACACACCATTTCGACGCAA
AGCAGGAGCTTTGGGCCTACTTCGTCTCCGACTCAACACTCTCAACTTTG
CACGTACATTTATGAACGCATCCTTGACCACGCTGCAAAATCGCCAGGCG
CGCAGTATTTCTTTATCTTTTTTGACCTCGTATGTGGAAGCATACCGGAA
TTTTAAAGATGCACAGCGCGTTGGAGAGGAAGGGCTTATTGAAGCAGCAC
GGCATAGCCTACATAAGGTTCATGTGGGCATATGCCAAGTGCTGGGGCGA
GAGCTTGCGGAGAAACACTGCCGAAGCGTAGAAGAGGGCATGGACACGGG
ACGAAAGAATGTTGTGCTGATGCCTTGGGGCATGACTGTAGCATTGCCGC
CTATGAGAATGTCGAGCCTTTCTAAGGCTCAAATACCCTCCTCTTCTAAT
GATTTGGCTATGGTAGGATTGAAAAGTACCAGTGGAAACAGCTATGACAT
TTCTCCAGGCCTGGGCCCGGAAAAAAGAAAAAGTTCTACCTTGCCTCCGA
GATCTGAAGGTGGTAATGAAAATATCAGCACCGCCAGGAGGCTGATGGCC
ACCACAAATTCCGACGCGAAGGCTGTGGAAAATCCCCCCAGCGCTATTAC
GCAACCTACGACGGCCGCAAAATTTGAGGCTGAAACAGAGGACGGAGAAA
CTTCGATCGACACTCAGCCCTCATCCACAATGCTGCTGAATGAAAAACTG
GCCCATGAAATCATACTTAACCCAACATTTTCAATCAGCGAGGAGAAAGC
GTCAATGTCCGCAGTCAGAGGAGAATTTGGGAATGAAGACCTCGGACACA
TACGCGACACTATGGAGGAGATCTTTTGGGATCGCTTGGTAGAAGCCATG
ACACCTCCCCTGCAAGAAGGCCCAAGCGATTTTACAAGCGGTTCGATAGC
GCAGATCCGCTTTGGAAGCGGACAGGGCTCACTTTTTGCATGCAAAGTTG
AAGCAGTAAATGAAGATGAAACCGTCGACATAGAGTATTTGGTTGATGGC
GTCAAAGAACGACGGCCGATCCATCAATTTCGTTTGAAAGACGATCCATT
GGAATACGAGCCATTCCTGGCACTTGTAGATGAAGTGCGGGAGAAACTGA
CGAGTTTGACACCTCGACGTATCGACCTGGCGGAGGAGCTGCGAGCCCAC
TTAGACAAAAAACTCTTGAGCCAAATGGCTCTTCAAGGTCTCCTGGATGC
ACCCGCGATCTACAAGTTGTTAAAGTACATATTTGATCATCTCATGGCGC
TTCAGGCTCCTGTTAGGGTTGCAGAGACGATGTCTTGGATTTCGGGCTTT
GAGAAGGAAGTACATGCATCCATGTCTGCATCGCAGCATGCCAAGTATAT
CCCGTCGGCCTTCGTTGCGTTGCTCCCTCGCGTGTTTCGAGGTATTTTTG
CACGTATAGATGAGACACAACGGGACATTGCTGACGCTCACATACAAATG
CTTCGACCTTATCTGGTTCAACATGGCGTTGAATACGAACGAGAAAAATT
TGCCGCGCGTTTTCTAACCGGTCAATGGAGGCTTTTAAATACTGAAGCAT
GGCTCAAAAAGGTATTAGCAAGTCCAGAAAACGCGTCGCACTTATCTTCA
ATCGCTCAAGGCGATGCAATGGCTCATCGCAACTTATTGTCTAGAGCAAT
GAAATGTCTCTTGCAACAACCAGTACGCATTGAAATCTGTAGTAACCTTC
CCGAGACGCTACGCTATGACGGATTACGTATGACAAAATTTCGGGACGAG
CAGGATAGAATCACGCTTGTTGCGGTCTATTCTTCTTTATTGCGTCAGTT
TTTAAGTGTACAATGTCCCTCATTGAATTCTCATCAATCCGAATGTATGG
GATCCACCATTCTTGCACTGGAGACCAGGTTGTACGTTCTTTTACAAGGA
GTCGGAAATACCGTTCTGCTTTCTTGTTTAATGGAGGAGGTGCTTGAATG
TGCGAGACAGATCTGCAAAAAAGAGGAAGCAGTCTTCAGCGGGGCTCAAG
CCTCCATTTTGCAAGGAATGCTTCACAATGCTGCAAAACCAAAAAGTCCT
TTGTTTGACTTGGTTTCAGAGCGCATATCCGCGGTCACAAATCTATATAT
GTGCGGGGAAGCCCAAAATGCTCATAAGGCCATGACTTGTTTTGGTCTTG
CATCATTTCAATCAAAGTTGGAGGTCACAGGTTATGGCTTGCATCGTTTA
TTCATGCATAATCTAGCCGTACACGGTGATGTATATTCTAAAATTCTTCG
CGACGAAGCTTCAATTTTATTATGCGAAAAAGATCATGGAAACTCCAGCC
TGATGTGACATTCCTGTATTCCATTGTGCAATCACGATCATTTCGACGTG
AAACTTCAAATGTACATCCCACTTTTCTAGAAATTGTCATGAAGTTTTCG
TATTTAAGAAACATTTTTTCCTCTCCTGTTTTAGGCAGTTTGACACGTTT
CATACATGAAAGAAACCTCTAGAGCAGATACCTTCGAAAATTCTGCTCCC
GTGCCGGATGTAATCTCGAAGAATCCAATGAAAGCAACGGGACGCATTTC
TATTTCTTCTCTACTAATAGAACAAATACAACAGGAAGTCAGGATTGGGC
TTTTAAAGATGTTTAAAGTATTTTCCGGCCTTTTCATGATTGAACACCAT
ACCATGGATACATGAGAATAAATTCGGAAGTGCGAAATATACCTGCCAAA
ATCATCTACAAAGAGCATTATGTTCGAAATGTGAGAATGTGAACGAGTTG
TG
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protein sequence of rna5253

>rna5253-protein ID=rna5253-protein|Name=rna5253|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MGREGGNSASSCPRPALLTLVLSQDPESFQHLRSRAPPVIPTKIALLLWT
IYMMRMRMEQTRDGLTSTGHERGTESCRQSSGQMQL
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mRNA from alignment at CM002465.1:540671..541350+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5253 ID=rna5253|Name=rna5253|organism=Nannochloropsis gaditana|type=mRNA|length=680bp|location=Sequence derived from alignment at CM002465.1:540671..541350+ (Nannochloropsis gaditana)
ATGGGCCGGTAAACGAAACAACGGCAACCTTGTTGCActtgctctttctt
tttcgtcccaaaactttcctcctgctgtcGCTGCACTGTCTCGGCTGACG
GGATCTTGTAGGACATGGTACATGCAAATAACTTGTGCGCCAGCACGCCT
TTGTGAGCGGCGTCAAGTTATCCTTGCGTggcttccacctccaaggccgc
gaGTAGACGCACGCATCCGGCAGCAAGGAAGGTCGCGGCCGAGCGAGCGA
GCGGTCGGGCAGGCAGGAAGATAAGGCCTGTACAGTGAAGGAGGTAACTC
AGCGTCgtcctgccctcgccctgctcTCCTAACACTTGTTCTATCACAAG
ATCCTGAAAGCTTTCAACACTTGTTTTACTGCTGTATTGACCCCAAGGAC
TGTTGACCATTGTAATGGTGGTCCTACAGGAGATCGAGAGCTCCTCCCGT
GATCCCGACAAAGGTAAGTAAGTGCACACTGTATTTACGTAAAAATAATG
CATATCTCACTCACATCTCTCGATCACTGTGATAATTTTCTATGGCAGAT
CGCACTGCTGTTGTGGACGATCTATATGATGAGGATGCGGATGGAGCAGA
CCAGAGATGGATTGACAAGCACTGGGCACGAACGAGGCACGGAAAGTTGT
CGGCAGAGCAGCGGACAGATGCAACTTTGA
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Coding sequence (CDS) from alignment at CM002465.1:540671..541350+

>rna5253 ID=rna5253|Name=rna5253|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002465.1:540671..541350+ (Nannochloropsis gaditana)
ATGGGCCGTGAAGGAGGTAACTCAGCGTCgtcctgccctcgccctgctcT
CCTAACACTTGTTCTATCACAAGATCCTGAAAGCTTTCAACACTTGAGAT
CGAGAGCTCCTCCCGTGATCCCGACAAAGATCGCACTGCTGTTGTGGACG
ATCTATATGATGAGGATGCGGATGGAGCAGACCAGAGATGGATTGACAAG
CACTGGGCACGAACGAGGCACGGAAAGTTGTCGGCAGAGCAGCGGACAGA
TGCAACTTTGAATGGGCCGTGAAGGAGGTAACTCAGCGTCgtcctgccct
cgccctgctcTCCTAACACTTGTTCTATCACAAGATCCTGAAAGCTTTCA
ACACTTGAGATCGAGAGCTCCTCCCGTGATCCCGACAAAGATCGCACTGC
TGTTGTGGACGATCTATATGATGAGGATGCGGATGGAGCAGACCAGAGAT
GGATTGACAAGCACTGGGCACGAACGAGGCACGGAAAGTTGTCGGCAGAG
CAGCGGACAGATGCAACTTTGAATGGGCCGTGAAGGAGGTAACTCAGCGT
CgtcctgccctcgccctgctcTCCTAACACTTGTTCTATCACAAGATCCT
GAAAGCTTTCAACACTTGAGATCGAGAGCTCCTCCCGTGATCCCGACAAA
GATCGCACTGCTGTTGTGGACGATCTATATGATGAGGATGCGGATGGAGC
AGACCAGAGATGGATTGACAAGCACTGGGCACGAACGAGGCACGGAAAGT
TGTCGGCAGAGCAGCGGACAGATGCAACTTTGAATGGGCCGTGAAGGAGG
TAACTCAGCGTCgtcctgccctcgccctgctcTCCTAACACTTGTTCTAT
CACAAGATCCTGAAAGCTTTCAACACTTGAGATCGAGAGCTCCTCCCGTG
ATCCCGACAAAGATCGCACTGCTGTTGTGGACGATCTATATGATGAGGAT
GCGGATGGAGCAGACCAGAGATGGATTGACAAGCACTGGGCACGAACGAG
GCACGGAAAGTTGTCGGCAGAGCAGCGGACAGATGCAACTTTGA
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Synonyms
Publications