rna5251, rna5251 (mRNA) Nannochloropsis gaditana

Overview
Namerna5251
Unique Namerna5251
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1056
Alignment locationCM002465.1:535941..536555 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g38.6733.mrna
Orig protein idgnl|cribi|Naga_100005g38.6733
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:535941..536555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g38gene5071Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5251rna5251-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25439.1cds5238Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5251 ID=rna5251|Name=rna5251|organism=Nannochloropsis gaditana|type=mRNA|length=1056bp
ATGGAGGCCATGTTTTGGTTGCTTGAAGAGATGACCATGGTTGTGAATGG
CTTCCGAAGCTTTTCTCATGAGGTTTTTCGAAGGGTAATTTTCGATGAAT
TTCTGGGGACAAATGAAGCCTATATTCGCCAGCACGACCTCATGGCACGG
TACTTTCAAAAAATGCCTACGTGCTCACGCAATTTTGAATGTCTTGCGTA
CCATCTCAAGGCCGCGGGATTGTGGACGAAATTGAAAGAAGCCCTTGTGG
ACATTGAAAATTTCAGGATGTGGTGGACGCCGGCGCACAAAAGCGAGTTT
ATTTCGTTGTGGGCGTCCCTGACATGTCGTAAAACTTTTGCGAAGTATTT
TGCAACCGCGAGAACGAAGTCTACCAGCGATTTAAATCACTATCAGGGTG
TTCGGGCGTATTTCGATGTGGTGGATGAGTATGTTCGCAGCTTAGAATAC
TACAGAGAGAAACAGAACCCCAGAGATGAAGACTTGGCCGACGTAGTCTT
ACGCATAGCAGAATTTCTACTAGAATATGCAATGTTAGGACATGAAGATT
CGGCAGATGTGCCGACATTCCTCCATCCGACAATTTCCCATGATGATTTG
AGGTCTATCGGGGTACCTGTTTTGGCCATCGATGCCAATGGAGAGGCGCG
CCTCACCGAACCACGTTTTCAAGGTAATACAGAGGCCATTATGAGTCAAA
CGGCTAATGCGCCATTATCTCCCAGCGCCCTTGCCGAAATAGCAAATGAC
AGGAAGGCCGTTTCGACATATTTTTATAATCGATGGATGTGGATTCAATT
TCCTTTGGTGGCTATTGCAAATTGCGGAGAGCGCTACAGCTTAGGTATTC
GTAGCGTACGACACTTCGAAGGACAGGATCAGCCCTCTTCTGATGTTTGC
ATAGCCGAATCCGCGGATACTTTGATGGGTGTCGATGAAAACAAAGCTGT
CAAGTCAGAGACCGAGCGAAAAATGTACTTACGTACTGGTGACGAGGAAA
GCGTCCAAAAGGTATGTAGGATCTCGGATAAGCTGCCTCAATACGACAAC
ATATGA
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protein sequence of rna5251

>rna5251-protein ID=rna5251-protein|Name=rna5251|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MSSREMTQLSILPSPSQHIRRKEESPSTFHRAMSLTCTDENKTRAWLHKA
SIIFSKTGISEPHLFFKKLENSLLLDDHLNNFKEQSEMKLMSLKIEGTQL
KRNLEGIDRGSLGLNMMNSKLLDAHKSMLKETDSNAALELSKHDYRFIHE
KVAESIIKGDQAKEGLEHLAELLRIIKREEKWEIEDIFAHIQMKLEEIKP
EQLA
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mRNA from alignment at CM002465.1:535941..536555+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5251 ID=rna5251|Name=rna5251|organism=Nannochloropsis gaditana|type=mRNA|length=615bp|location=Sequence derived from alignment at CM002465.1:535941..536555+ (Nannochloropsis gaditana)
ATGTCAAGTCGAGAAATGACTCAGCTCTCCATacttccatctccttccca
gCACATtcggagaaaagaggaaagcccGTCCACATTTCACCGTGCTATGT
CGTTGACATGCACAGATGAAAATAAGACACGAGCATGGTTGCATAAAGCT
TCGATTATTTTTTCGAAAACTGGTATTTCTGAACCCCATCTTTTTTTCAA
GAAGCTCGAAAATAGTCTTCTCCTTGATGATCACTTAAACAATTTTAAAG
AGCAGTCTGAAATGAAATTAATGAGCTTGAAAATCGAAGGAACACAGCTC
AAGAGAAACCTTGAAGGAATAGATCGTGGTTCCTTAGGACTCAACATGAT
GAATTCCAAGCTTTTAGATGCACACAAGTCGATGTTAAAAGAGACAGATT
CTAATGCCGCACTGGAGCTTTCTAAACACGACTACCGATTTATCCACGAG
AAAGTGGCAGAAAGCATTATCAAAGGAGACCAGGCAAAAGAAGGTCTCGA
GCATCTAGCAGAGCTTTTAAGAATCAttaagagggaagaaaaatgggAAA
TAGAAGACATCTTTGCGCACATTCAGATGAAATTAGAAGAGATAAAGCCT
GAGCAATTAGCATGA
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Coding sequence (CDS) from alignment at CM002465.1:535941..536555+

>rna5251 ID=rna5251|Name=rna5251|organism=Nannochloropsis gaditana|type=CDS|length=615bp|location=Sequence derived from alignment at CM002465.1:535941..536555+ (Nannochloropsis gaditana)
ATGTCAAGTCGAGAAATGACTCAGCTCTCCATacttccatctccttccca
gCACATtcggagaaaagaggaaagcccGTCCACATTTCACCGTGCTATGT
CGTTGACATGCACAGATGAAAATAAGACACGAGCATGGTTGCATAAAGCT
TCGATTATTTTTTCGAAAACTGGTATTTCTGAACCCCATCTTTTTTTCAA
GAAGCTCGAAAATAGTCTTCTCCTTGATGATCACTTAAACAATTTTAAAG
AGCAGTCTGAAATGAAATTAATGAGCTTGAAAATCGAAGGAACACAGCTC
AAGAGAAACCTTGAAGGAATAGATCGTGGTTCCTTAGGACTCAACATGAT
GAATTCCAAGCTTTTAGATGCACACAAGTCGATGTTAAAAGAGACAGATT
CTAATGCCGCACTGGAGCTTTCTAAACACGACTACCGATTTATCCACGAG
AAAGTGGCAGAAAGCATTATCAAAGGAGACCAGGCAAAAGAAGGTCTCGA
GCATCTAGCAGAGCTTTTAAGAATCAttaagagggaagaaaaatgggAAA
TAGAAGACATCTTTGCGCACATTCAGATGAAATTAGAAGAGATAAAGCCT
GAGCAATTAGCATGA
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Synonyms
Publications