rna5248, rna5248 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5248
Unique Name	rna5248
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	963
Alignment location	CM002465.1:526473..529097 -

Link to JBrowse

Properties


Property Name	Value
Product	anthranilate synthase
Orig transcript id	gnl\|cribi\|Naga_100005g35.6729.mrna
Orig protein id	gnl\|cribi\|Naga_100005g35.6729
Gene	AS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:526473..529097 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
AS	gene5068	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25435.1	cds5235	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5248	rna5248-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:526473..529097-
coding sequence from alignment at CM002465.1:526473..529097-

mRNA sequence

>rna5248 ID=rna5248|Name=rna5248|organism=Nannochloropsis gaditana|type=mRNA|length=963bp
GCTTGGCGCTTTGCCGGCACATATTGCTTCCTACTGGCCACCTATCATGG
TTTCGCTTGTCAAACCTCCCGTCGACGCCTCCTCCGAGTCGGAGGAGCGA
AAGGCGACTGAAACAGAAAATGTGGGGCTCTCTGCCTTTACGGAGAGTTT
TTTTTGCGAGTGGATTTACTTGTACATTGAAGCACGACAAGACTACTTAC
AACAAATGGACCTTGAAAAATTGTCAGGATCAAGCCGTTGCTCTGGCTAT
TCAATTATGCCCCTCTTTGTCGAGAAAGATATCTCACCTTTTCTTACTCT
CGCAATCCTCTCCAGGAATGGTCGACAACAACACATCTTCCTCGTACAGC
GCATCAGATGACAACCTGCCCAAAATTGATCTTTTTGGAGGTGGAAACGT
GGATCTGCGAACAGTTGCCCCTCTGTACGGCGTGGCAAGCGAGGAGGAAC
CTGACTACCTGGACTACGATATTAAAGGCAGGGGCACGGTGGAACGCATG
TTTTTGTATTCGGGTTCTTCTTATCTGACAGGAATCTTAACCGGTGGTAT
TCTGGGTGGGCGTAGGGGGTGGAAGACAGCGCCCAGTCCACGATTCTGGC
TTCGACTGAACAGCGTCATGAACGGGGCAGGAAAGTTAGGCTCGAAGTGG
GGCAACAACGCCGGCGTTTTCGCTCTTATGTACTCGCTAAGTGAATCGTT
GCTCGATCACTTCGAAACGGACAAAGTTCTAGGTGGACATCAAGCCGTAA
ATCCTGTGCTCTCGGGCGCCATCAGCGGTCTTCTGTACAAGTCCACCGCG
GCGCCACGGACGGCAGCTCTAGCTTCAGTGTTGGGCGGGTTTGGGGCTGG
TATGTTTTATGTGATTCGAGGACAGCTTGACCGCTTCTTTTATCGTTGAA
GCTTATGCAAGGGGTCCAATATAAAGCTTTGGAGGGAAAAGCATAAAAAT
ACATGTACAAAGA

protein sequence of rna5248

>rna5248-protein ID=rna5248-protein|Name=rna5248|organism=Nannochloropsis gaditana|type=polypeptide|length=874bp
MHDLRPPRLKSAVLALSVLIFLHIQLGVHAGPTCRSRRASGSLRSPSAPL
SFHGPCSSSYSHLRSWTDRSFEDPLSIQHRCWKSGENERIRGSCEFKRGR
KGDLSMTMMEGEEGRLSLGAPRYRPLSGRFITKGGVQVTCQVEDVSDTGK
EVDALLEGLDSHEGVLLASSYEFPGRYARWTIGFIDPPLKIESRGLNFKV
KALNARGEVLLEVIQDALERPDSSLALASLERTGHPAGEDGGTVLSGQVP
KSDEYFPEEERSRQPSIFSVIRTLVDFFQSDGDPQLGLYGTFGYDLTFQF
EPIKLRMPRSDNQRDVVLYLPDRVLVVDQDKRAAWRVEYDFSWNGRSTQG
LARTGRVLEYRAAPAEALKRDRDSPVGEYARRVAMAKDQFKVGNLFEVVL
SQTFFKECPSAPSRVFSRLRTTNPSPYGFLINLGDGEYLIGASPEMFVRC
EQTKAGLRVETCPISGTIARGSDALEDAARIKAILTNPKEESELTMCTDV
DRNDKSRICEPGSVRVLGRRQIEMYSRLIHTVDHVEGYLRRGFDALDAFL
CHTWAVTVTGAPKTWAIQFIEDQEASPRAWYGGAVGLVAFDGSLNTGLTL
RTIRLLNGIAEVRAGATLLYDSDPPAEEAETELKASALIDALACESSETA
GVTGEEAAQAADEARRVLLVDHQDSFVHTLANYLRQTGADVSTVRSGPNA
LRLIRNTKPDLLVLSPGPGCPADFHLSDTIDAALASRVPVFGVCLGLQGM
VEHFGGQLDVLAYPMHGKPSTVKLTPAAATGGDVLGHRYKIFEGLPRCFD
VARYHSLHGKKAGFPQDLRVTAMSEDGVIMGIEHRELPFAAVQFHPESIL
TNPKHGLRMLANAVKYLVFEDPKE

mRNA from alignment at CM002465.1:526473..529097-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5248 ID=rna5248|Name=rna5248|organism=Nannochloropsis gaditana|type=mRNA|length=2625bp|location=Sequence derived from alignment at CM002465.1:526473..529097- (Nannochloropsis gaditana)
ATGCATGATTTGAGACCACCACGTTTGAAAAGTGCTGTGTTAGCACTATC
AGTATTAATTTTTCTACATATCCAATTGGGAGTTCACGCTGGCCCAACCT
GCCGCTCAAGAAGAGCAAGCGGCTCCCTCAGATCACCATCCGCGCCCTTG
TCTTTCCACGGCCCCTGCTCTTCCTCGTACTCTCATCTAAGGAGTTGGAC
CGACCGCTCTTTCGAAGACCCTTTAAGCATACAGCATCGTTGCTGGAAAA
GTGGTGAGAATGAGAGAATAAGAGGCAGTTGCGAGTTCAAGCGCGGCCGC
AAGGGAGACCTGTCGATGACGATGATGGAGGGTGAGGAGGGTCGGCTTTC
TCTTGGGGCACCTCGGTACAGACCGCTTTCGGGCAGATTCATAACGAAAG
GGGGTGTCCAAGTGACATGTCAAGTCGAGGACGTGTCAGACACTGGCAAG
GAGGTCGACGCCTTGCTAGAGGGCCTCGACTCTCATGAGGGGGTGCTGCT
GGCATCCTCTTATGAATTCCCCGGCCGATATGCGCGATGGACCATTGGCT
TCATCGATCCTCCCCTTAAAATTGAAAGCCGGGGTCTAAACTTTAAGGTG
AAGGCATTGAATGCACGTGGAGAGGTGCTGTTGGAGGTTATTCAAGACGC
GCTCGAGCGGCCGGACTCGTCATTGGCTCTGGCCAGCTTGGAACGCACCG
GTCACCCAGCTGGTGAAGATGGCGGGACGGTTCTTTCTGGGCAAGTGCCC
AAGTCAGACGAATACTTCCCCGAAGAAGAGCGTTCGCGGCAGCCAAGCAT
CTTTAGCGTAATCCGCACCTTGGTGGACTTTTTTCAGAGCGACGGGGACC
CACAGTTGGGCTTGTACGGGACCTTCGGGTACGACTTGACTTTCCAGTTT
GAACCCATCAAACTGCGCATGCCGCGGTCAGACAATCAACGAGACGTGGT
ACTGTACTTGCCCGACCGAGTCTTGGTGGTCGACCAGGACAAGCGCGCGG
CCTGGCGGGTGGAGTATGACTTCAGCTGGAACGGCCGGAGCACGCAAGGG
CTTGCCCGGACGGGTAGGGTCTTGGAGTACCGAGCTGCGCCTGCGGAGGC
CCTGAAGCGGGACCGTGATAGCCCGGTTGGGGAATACGCGCGGCGGGTGG
CGATGGCGAAGGACCAGTTCAAGGTAGGGAACTTGTTCGAGGTGGTGCTC
AGCCAGACCTTCTTCAAGGAGTGTCCCTCTGCACCTTCGCGAGTCTTTTC
CCGCCTGCGCACCACTAATCCCTCTCCTTACGGCTTTCTCATCAACTTGG
GGGACGGTGAGTACCTGATCGGGGCCTCGCCTGAGATGTTCGTGCGCTGT
GAGCAAACGAAGGCCGGCCTTCGGGTTGAGACTTGTCCCATCTCCGGGAC
AATAGCTCGAGGCAGCGACGCCCTGGAGGACGCGGCCAGGATCAAGGCGA
TTCTAACCAACCCGAAGGAGGAGTCGGAGCTGACCATGTGCACGGACGTG
GACCGGAATGACAAGAGTCGTATTTGTGAGCCCGGCTCGGTGCGCGTGCT
CGGGCGGCGGCAAATTGAGATGTACTCGCGGCTGATCCATACCGTAGACC
ACGTCGAGGGCTATTTGCGCAGGGGCTTCGACGCGCTGGACGCTTTCCTG
TGTCATACTTGGGCCGTCACGGTCACGGGCGCGCCCAAGACCTGGGCCAT
CCAGTTCATCGAGGACCAGGAGGCATCGCCCCGGGCCTGGTACGGCGGGG
CCGTAGGGCTCGTAGCCTTCGACGGCTCCCTGAACACCGGCCTCACCCTG
CGGACGATCCGTCTCTTAAATGGCATTGCCGAGGTGCGGGCGGGAGCCAC
GCTCTTGTATGACAGCGACCCACCTGCGGAAGAGGCTGAGACAGAGCTGA
AAGCCTCGGCGCTGATAGACGCCTTGGCCTGCGAAAGCTCTGAGACCGCG
GGTGTCACTGGAGAAGAGGCGGCTCAGGCCGCCGATGAGGCTCGACGGGT
GCTGTTAGTCGACCATCAGGATTCCTTCGTGCACACTCTTGCCAATTATC
TTCGACAAACGGGCGCGGATGTTAGCACGGTTCGTAGTGGGCCAAATGCC
CTTAGGCTAATACGAAACACCAAGCCCGACCTCCTGGTTCTGTCCCCCGG
TCCTGGATGCCCGGCCGACTTTCACCTTTCCGATACAATCGACGCCGCCT
TGGCTTCGCGTGTGCCTGTTTTTGGCGTCTGCCTTGGGTTACAGGGCATG
GTCGAGCATTTCGGCGGACAACTAGACGTGCTGGCTTACCCCATGCACGG
TAAGCCTTCTACGGTAAAGCTGACCCCTGCTGCTGCCACGGGAGGGGACG
TTCTAGGCCATAGATACAAGATATTTGAGGGTTTGCCTCGTTGCTTTGAC
GTCGCACGCTATCACTCGCTACACGGAAAGAAAGCGGGCTTTCCGCAAGA
CTTGCGTGTGACAGCCATGAGCGAGGACGGAGTTATCATGGGCATCGAGC
ACCGAGAGCTGCCTTTCGCCGCTGTTCAGTTTCATCCCGAGTCAATCTTG
ACTAATCCCAAGCATGGATTGCGCATGCTTGCCAATGCTGTAAAATACTT
GGTGTTTGAGGATCCGAAAGAATAA

Coding sequence (CDS) from alignment at CM002465.1:526473..529097-

>rna5248 ID=rna5248|Name=rna5248|organism=Nannochloropsis gaditana|type=CDS|length=2625bp|location=Sequence derived from alignment at CM002465.1:526473..529097- (Nannochloropsis gaditana)
ATGCATGATTTGAGACCACCACGTTTGAAAAGTGCTGTGTTAGCACTATC
AGTATTAATTTTTCTACATATCCAATTGGGAGTTCACGCTGGCCCAACCT
GCCGCTCAAGAAGAGCAAGCGGCTCCCTCAGATCACCATCCGCGCCCTTG
TCTTTCCACGGCCCCTGCTCTTCCTCGTACTCTCATCTAAGGAGTTGGAC
CGACCGCTCTTTCGAAGACCCTTTAAGCATACAGCATCGTTGCTGGAAAA
GTGGTGAGAATGAGAGAATAAGAGGCAGTTGCGAGTTCAAGCGCGGCCGC
AAGGGAGACCTGTCGATGACGATGATGGAGGGTGAGGAGGGTCGGCTTTC
TCTTGGGGCACCTCGGTACAGACCGCTTTCGGGCAGATTCATAACGAAAG
GGGGTGTCCAAGTGACATGTCAAGTCGAGGACGTGTCAGACACTGGCAAG
GAGGTCGACGCCTTGCTAGAGGGCCTCGACTCTCATGAGGGGGTGCTGCT
GGCATCCTCTTATGAATTCCCCGGCCGATATGCGCGATGGACCATTGGCT
TCATCGATCCTCCCCTTAAAATTGAAAGCCGGGGTCTAAACTTTAAGGTG
AAGGCATTGAATGCACGTGGAGAGGTGCTGTTGGAGGTTATTCAAGACGC
GCTCGAGCGGCCGGACTCGTCATTGGCTCTGGCCAGCTTGGAACGCACCG
GTCACCCAGCTGGTGAAGATGGCGGGACGGTTCTTTCTGGGCAAGTGCCC
AAGTCAGACGAATACTTCCCCGAAGAAGAGCGTTCGCGGCAGCCAAGCAT
CTTTAGCGTAATCCGCACCTTGGTGGACTTTTTTCAGAGCGACGGGGACC
CACAGTTGGGCTTGTACGGGACCTTCGGGTACGACTTGACTTTCCAGTTT
GAACCCATCAAACTGCGCATGCCGCGGTCAGACAATCAACGAGACGTGGT
ACTGTACTTGCCCGACCGAGTCTTGGTGGTCGACCAGGACAAGCGCGCGG
CCTGGCGGGTGGAGTATGACTTCAGCTGGAACGGCCGGAGCACGCAAGGG
CTTGCCCGGACGGGTAGGGTCTTGGAGTACCGAGCTGCGCCTGCGGAGGC
CCTGAAGCGGGACCGTGATAGCCCGGTTGGGGAATACGCGCGGCGGGTGG
CGATGGCGAAGGACCAGTTCAAGGTAGGGAACTTGTTCGAGGTGGTGCTC
AGCCAGACCTTCTTCAAGGAGTGTCCCTCTGCACCTTCGCGAGTCTTTTC
CCGCCTGCGCACCACTAATCCCTCTCCTTACGGCTTTCTCATCAACTTGG
GGGACGGTGAGTACCTGATCGGGGCCTCGCCTGAGATGTTCGTGCGCTGT
GAGCAAACGAAGGCCGGCCTTCGGGTTGAGACTTGTCCCATCTCCGGGAC
AATAGCTCGAGGCAGCGACGCCCTGGAGGACGCGGCCAGGATCAAGGCGA
TTCTAACCAACCCGAAGGAGGAGTCGGAGCTGACCATGTGCACGGACGTG
GACCGGAATGACAAGAGTCGTATTTGTGAGCCCGGCTCGGTGCGCGTGCT
CGGGCGGCGGCAAATTGAGATGTACTCGCGGCTGATCCATACCGTAGACC
ACGTCGAGGGCTATTTGCGCAGGGGCTTCGACGCGCTGGACGCTTTCCTG
TGTCATACTTGGGCCGTCACGGTCACGGGCGCGCCCAAGACCTGGGCCAT
CCAGTTCATCGAGGACCAGGAGGCATCGCCCCGGGCCTGGTACGGCGGGG
CCGTAGGGCTCGTAGCCTTCGACGGCTCCCTGAACACCGGCCTCACCCTG
CGGACGATCCGTCTCTTAAATGGCATTGCCGAGGTGCGGGCGGGAGCCAC
GCTCTTGTATGACAGCGACCCACCTGCGGAAGAGGCTGAGACAGAGCTGA
AAGCCTCGGCGCTGATAGACGCCTTGGCCTGCGAAAGCTCTGAGACCGCG
GGTGTCACTGGAGAAGAGGCGGCTCAGGCCGCCGATGAGGCTCGACGGGT
GCTGTTAGTCGACCATCAGGATTCCTTCGTGCACACTCTTGCCAATTATC
TTCGACAAACGGGCGCGGATGTTAGCACGGTTCGTAGTGGGCCAAATGCC
CTTAGGCTAATACGAAACACCAAGCCCGACCTCCTGGTTCTGTCCCCCGG
TCCTGGATGCCCGGCCGACTTTCACCTTTCCGATACAATCGACGCCGCCT
TGGCTTCGCGTGTGCCTGTTTTTGGCGTCTGCCTTGGGTTACAGGGCATG
GTCGAGCATTTCGGCGGACAACTAGACGTGCTGGCTTACCCCATGCACGG
TAAGCCTTCTACGGTAAAGCTGACCCCTGCTGCTGCCACGGGAGGGGACG
TTCTAGGCCATAGATACAAGATATTTGAGGGTTTGCCTCGTTGCTTTGAC
GTCGCACGCTATCACTCGCTACACGGAAAGAAAGCGGGCTTTCCGCAAGA
CTTGCGTGTGACAGCCATGAGCGAGGACGGAGTTATCATGGGCATCGAGC
ACCGAGAGCTGCCTTTCGCCGCTGTTCAGTTTCATCCCGAGTCAATCTTG
ACTAATCCCAAGCATGGATTGCGCATGCTTGCCAATGCTGTAAAATACTT
GGTGTTTGAGGATCCGAAAGAATAA

Synonyms

Publications