rna5242, rna5242 (mRNA) Nannochloropsis gaditana

Overview
Namerna5242
Unique Namerna5242
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1461
Alignment locationCM002465.1:513710..513995 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g29.6709.mrna
Orig protein idgnl|cribi|Naga_100005g29.6709
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:513710..513995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g29gene5062Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5242rna5242-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25415.1cds5229Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5242 ID=rna5242|Name=rna5242|organism=Nannochloropsis gaditana|type=mRNA|length=1461bp
ATGTTCGCGTGGTCGTTGTGGAGGATTGATTACATATTGTGTCTCGTCGC
TCTCTCGAGCAGCGCTTGTAGGGGCTTTGTGGTGCCTCGAAGCGTCTCCA
AACATGCCCGATCCGTGCAATCCAGGGCCACCACAATCCCAGAGACGCCT
GCTACCTCCTCCACAGTTTCCAACCAAAGGCAATACCCGTTGATCGAGCC
CGTGTTTGACGAGGTATGTGAGATGAGCGGCGTGACTCTCACGCGGTATA
TGATGGAAATAAGCCGGGCCAATCCGCACCTGAAGGAAATTGAATCCTTG
ATGAACAGTATTCAGACGGCTTGCAAGACAATATCGAGCCTGGTTAATCG
CGCCTGCATCACGAAGATGACCGGCTACCAGGATGACGGGTGCTCCATCA
ACGTCCAAGGAGAGCAGCAAAAGAAACTCGATGTTCTGACAAATGATGTA
CTTAAGAAGGCTTTGCGATTTACGGGGAGGCTCACAGTCCTAGCCTCAGA
AGAGGAGGACGAGCCAGTCTCAATGGAGGATCGAGAGCGAATATACGCTG
ACCTTCGCAATTCGGACGTGGTACTTGAAGAGGGCAATAAGTATGTGGCG
TGCTTTGATCCGCTTGACGGAAGCTCGAACGTGGATGCCAGCATTCCCGT
CGGGACGATTTTCGGGATATTTGCCAGCGGAGAAGAGACGGAGTGCCTTC
TCGACGACGAGGATCTGGACGGGACCCCCATGGACCCCGAGTCTCGCGCC
GCCAAGTGTCTAATGAGCACCCTTCAGCCCGGCACCAACTTAGTCGCTGC
TGGCTATTGCCTCTACTCTTCCTCTGCACACCTTGTCTTCACGCTCGGCA
GGGGTGTCAACGGCTTCACCTACGATACGCACATAGGCGAGTTTGTCCTC
ACGCACCCAAACATTCGCATACCCGAGCGAGGTCAGATCTACTCCTTCAA
CGAGGCCAACCGCTGGGACTGGGACTCGCCCATGCAGGAATATGTGACCA
GCCTGCAAATGGGCCAAGGCCAGTCGGGCAAGCGCTACTCGTCCAGGTAT
ATCGGGTCGATGGTGGGAGACGTGCACCGGACCCTCCTGTATGGAGGCAT
TTTTGGTTATCCCGCCGATGCGCAGAATCGCGATGGTAAGCTGCGACTCT
TATACGAGGCGGCGCCCATGGCTTTCTTGGTGGAGCAAGCTGGAGGGTTG
GCACTCACGGGAAAGAACAGGATCATGGAGATTCGGCCCCGCGGCGTCCA
TCAACGCGAGTTTTTACAACGCGAGCAAAGACCCGGATCTGATCCGTCGG
TGCCTCGAGCGACTCAACTCCCCCTAGGACTAGTAACACTGCAAAAATGC
TCGCCCACGAAAATGTTTGAAAGAAGCGCAAGGACAGAAAGCTGTCCTGA
ATCAGAGGAACGCGCAAGCCGTCCGGCCGAAACTGAGTTCAGCATTATAG
CACGTGGTTAA
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protein sequence of rna5242

>rna5242-protein ID=rna5242-protein|Name=rna5242|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MISGGKDMLAMKGLALALRATETPEFRRTFTPHRHFTGTSKIIYIYIYIY
IHIIYRTKTTDLSPDRIMWFLYFKPYLT
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mRNA from alignment at CM002465.1:513710..513995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5242 ID=rna5242|Name=rna5242|organism=Nannochloropsis gaditana|type=mRNA|length=286bp|location=Sequence derived from alignment at CM002465.1:513710..513995+ (Nannochloropsis gaditana)
ATGATttcagggggaaaggatatGCTTGCCATGAAAGGACTGGCCCTGGC
TTTGCGTGCGACAGAAACTCCTGAATTTAGACGTACCTTCACACCTCATC
GCCATTTCACCGGAACAAGTAAaattatatatatatatatatatatatat
atacatataatTTATCGAACAAAAACGACAGATCTTTCACCAGATAGAAT
TATGTGGTTTCTATATTTCGTGCTCTTCCTTATCCACGTCCCATCATATT
CCACGCGATATACCTTAGAAACCTTATCTTACCTAG
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Coding sequence (CDS) from alignment at CM002465.1:513710..513995+

>rna5242 ID=rna5242|Name=rna5242|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002465.1:513710..513995+ (Nannochloropsis gaditana)
ATGATttcagggggaaaggatatGCTTGCCATGAAAGGACTGGCCCTGGC
TTTGCGTGCGACAGAAACTCCTGAATTTAGACGTACCTTCACACCTCATC
GCCATTTCACCGGAACAAGTAAaattatatatatatatatatatatatat
atacatataatTTATCGAACAAAAACGACAGATCTTTCACCAGATAGAAT
TATGTGGTTTCTATATTTCAAACCTTATCTTACCTAGATGATttcagggg
gaaaggatatGCTTGCCATGAAAGGACTGGCCCTGGCTTTGCGTGCGACA
GAAACTCCTGAATTTAGACGTACCTTCACACCTCATCGCCATTTCACCGG
AACAAGTAAaattatatatatatatatatatatatatatacatataatTT
ATCGAACAAAAACGACAGATCTTTCACCAGATAGAATTATGTGGTTTCTA
TATTTCAAACCTTATCTTACCTAG
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Synonyms
Publications