rna5235, rna5235 (mRNA) Nannochloropsis gaditana

Overview
Namerna5235
Unique Namerna5235
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1720
Alignment locationCM002465.1:492388..492825 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g22.6764.mrna
Orig protein idgnl|cribi|Naga_100005g22.6764
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:492388..492825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g22gene5055Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25470.1cds5222Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5235rna5235-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5235 ID=rna5235|Name=rna5235|organism=Nannochloropsis gaditana|type=mRNA|length=1720bp
CAAAAAAATTGTTGTCACCACATGGTGTCATGTTCGCTGTTGTCATTGCT
CTTCCACTTGATTTTCTATGCAATTGCTCAGATGCGGCACATCTAAATGC
GAACATTATGCCCCCGTCGCTTTTTCAAAAGTTTCTGTGAGTCACTGTAG
TGTTGGCGAAAGTCAAACCACTCGTGAGACGCAGGGCCGTCTTCAAGCTG
GCGCCGAACAGAGCAGCGGCAGGGCTCACACGGATTTCTTTCAAAGACAT
TTTAATTTCCAAAAAATCAATTGGCTTTCAGCGCTCTATCATTTCTAACA
ACAGACAAATGTTTCGCAAGATGACACTGTTCATGGCTGTCGCGGCCGCA
TCCTTGGCCTTTGCCGGTGCCGATGCCTCTGTTTCGACAGAGCCGGAGAC
GCGCACCCCCAAGCCGATGCTCAAAGTGTTGTGCATGCCGAAGTCTGTCG
CTCTTAACACACCTTTCTACGTGAACCTTGAATACGCGGCTCCTTTCTCT
CGACCCATGGCCATCCACGTGGACCTCCTCAACGCGGACACGAACGAGTG
GCAGGCAGGCGATGTTGTCAAGGTGACCGGCGCCGCTGGGAAGGTGACCT
CCCGCATCGTGGTGCCTCAGGACGCTAAGACCCCGTTCAAATGGTTCGCC
TACATTGCGCCTCAGGACGAGAACTGGCCCAACATGCTGGCCACTACTAC
CTTCACGGCGGACTTGGGTGCCAAGGTGATGGCACCGTGCGCCCCGCTGC
GAAACACGGCACGCAGCCCCAGCAAGCCCGTTGACTTCGACTACGTGCTG
GTGAAGGACTACCCTTCGGCTTTCCATGCGGGGGCGAAGACGCCTGTCGA
GGTGCAGTACAACCTGATGCCTGACCAGCCTTCTATGTACGTGTCGGCCA
CGCTGTTGCGCGCGAGCGACAACACTGTGGTGGCGTCGGCTCAGGAGAAG
GCGAAGGAAGGCGAGCACGACCTGACCATGTTCATGGACGTGCCCGCGGA
CGCCCTCATGAGCGAGCCTGTGTACCTGATGGCGGTTCTCAAGCCAGCGG
GCAAGGCTTTCAGCGAGCGCGTGGCGGAGGACCGCGTCTGGGCGACGTCC
GTGTGGCAGCAACGCCGCATGCTCCGTGCCAGTGAGGCGGACAAGTAGCT
TGTTGGTCGCCACCGACTTGAAGCGGTATAAGAGATGTATTAAAGAAGCG
CATCGGCGTCGAGGGAGTCTGCATTTTTCTCGGTGGAATTAACTTCGGGT
TAATTAACCACGGTGGATCGGGTGAAGCAATGATATGGTGTGACTGGAAA
GATCATTGATAGAACTACTTTCCATATTTTCTACTGGTTGTGTGTAGTCA
ATTGCCATAATCGGAAACGCCGCCCTCGCGCAAGGAAGAAAAAGAATGCA
GCTGAAGTGTTAGAACCTACTTTTTCTTTGTTCGGTCAGTGGGAGTATGA
AGTTTGTTCCATGGCCCATGAGCGGCGAACTTCCGCCGCATCTACGAGTT
GTAGGTGTAGGGAGGGAGTTGCTGGACATGCACGGGACCAGGTCTTGCCG
AGGCAGCTATCTCGCATTTAAGTGAATGGCAATTATATCTTGAATTCGTG
AATGTGAAAGTTGTGGATTTTGGTAAAAACACACAAGTTTATGCAATTTG
CGCTTGGCTGTGTCGTGTAAACGTTGTCTTTTGTGACGTGAGGAGCCCCC
GCCACGACACGAGGGCCTGG
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protein sequence of rna5235

>rna5235-protein ID=rna5235-protein|Name=rna5235|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
MCLKAHLFDADPITSVRVNTSGWSGGDRYRRGGEKGPTGARGERFGRQGL
LQNTLPSRTSFHLNDGQMCSPGYPDRALVVLCSISSVCYYDWMPAGGMTK
PGPRVVAGAPHVTKDNVYTTQPSANCINLCVFTKIHNFHIHEFKI
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mRNA from alignment at CM002465.1:492388..492825-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5235 ID=rna5235|Name=rna5235|organism=Nannochloropsis gaditana|type=mRNA|length=438bp|location=Sequence derived from alignment at CM002465.1:492388..492825- (Nannochloropsis gaditana)
ATGTGTTTAAAGGCTCATCTGTTTGATGCAGATCCCATTACCTCCGTCCG
TGTCAACACTAGTGGCTGGTCGGGCGGAGATAGATACAGGCGAGGGGGCG
AAAAGGGGCCAACGGGAGCGAGAGGAGAGCGCTTCGGCCGTCAGGGGCTC
CTGCAAAACACTCTACCGTCACGTACGAGCTTTCACTTGAATGATGGACA
GATGTGTTCACCCGGCTACCCAGACAGGGCTCTTGTAGTGCTTTGCTCAA
TTTCTAGCGTTTGTTACTATGACTGGATGCCGGCTGGAGGGATGACCAAG
CCAGGCCCTCGTGTCGTGGCGGGGGCTCCTCACGTCACAAAAGACAACGT
TTACACGACACAGCCAAGCGCAAATTGCATAAACTTGTGTGTTTTTACCA
AAATCCACAACTTTCACATTCACGAATTCAAGATATAA
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Coding sequence (CDS) from alignment at CM002465.1:492388..492825-

>rna5235 ID=rna5235|Name=rna5235|organism=Nannochloropsis gaditana|type=CDS|length=438bp|location=Sequence derived from alignment at CM002465.1:492388..492825- (Nannochloropsis gaditana)
ATGTGTTTAAAGGCTCATCTGTTTGATGCAGATCCCATTACCTCCGTCCG
TGTCAACACTAGTGGCTGGTCGGGCGGAGATAGATACAGGCGAGGGGGCG
AAAAGGGGCCAACGGGAGCGAGAGGAGAGCGCTTCGGCCGTCAGGGGCTC
CTGCAAAACACTCTACCGTCACGTACGAGCTTTCACTTGAATGATGGACA
GATGTGTTCACCCGGCTACCCAGACAGGGCTCTTGTAGTGCTTTGCTCAA
TTTCTAGCGTTTGTTACTATGACTGGATGCCGGCTGGAGGGATGACCAAG
CCAGGCCCTCGTGTCGTGGCGGGGGCTCCTCACGTCACAAAAGACAACGT
TTACACGACACAGCCAAGCGCAAATTGCATAAACTTGTGTGTTTTTACCA
AAATCCACAACTTTCACATTCACGAATTCAAGATATAA
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Synonyms
Publications