rna5225, rna5225 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5225
Unique Name	rna5225
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2095
Alignment location	CM002465.1:470631..473143 -

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Properties


Property Name	Value
Product	phosphatase ptc7 family protein
Orig transcript id	gnl\|cribi\|Naga_100005g12.6751.mrna
Orig protein id	gnl\|cribi\|Naga_100005g12.6751
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:470631..473143 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g12	gene5045	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25457.1	cds5212	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5225	rna5225-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:470631..473143-
coding sequence from alignment at CM002465.1:470631..473143-

mRNA sequence

>rna5225 ID=rna5225|Name=rna5225|organism=Nannochloropsis gaditana|type=mRNA|length=2095bp
CCTCCCACACTTACACTCCGACACCCGCTCTCAGGCACAGCGTTTGGGAC
AAGAGCCTGTGCCTGGTGTAATTATGGTGCGGCGCAGGAGCGTCAAGGAT
GACACCTCATCTGAAGAGGAGGAGGAGGAGGAGGTATCATCGTCCGATGA
GGAAGATGAAGACAGTGATTTTTCCCCTTGGGAGGCCACTACAAGGAAAG
GGAAGAAGATTACCAAAGCTGCGCCCGAGCAATCCATTGCAAGGAGTCAT
ACCGCTGCTACACTGACGTCCTCGGCGTCGAAGAAGAAGAGCCCGAGCCA
ACCACGCAGTCTTGGAAAAAAAGAGGGGAAGAGAGGAGGAGGGCACGGGA
CGGTCCCCCGAAAAGCTGCTGCAGCCAGAACAGGTACCACATCTCCTGGT
ACCCTAGCAGGCCGAAAACGGAGAAAGTTGGAAAGAGAGGAAGATGATGA
AGAGGAAGGGAAGGAGGAAGACGAGGCAAAAGAAGTGTACGATGAGGATG
AGGAGGAAGATGACGACGACGAACCAGAAGGTAAAAGCCGAGGAGGCAGC
ACGAGGAGGATGACCGGAAAGAATCAACGCAAGACCAAGGGCTTAAATGT
CACCGGTGTTGGAAATAGCAAGGTGGACAAGGTCTTGGAGGAGGTGCGTC
AATTAATGCTGCGGTCCCGGCGGGACGACGCCCCCAACCCGACGCTGGCA
GACCTGGGAATTACCACGGTGCGAGAGGTGTCGGATATGGCGCCAGAGGG
AGTGCTCTTCGAAATCGAAAAGACAATACTCGCGGCGGCAGGCATGATTC
TGCGCGGAGAGGGCTTCTCGTACCAGGTACCGACCCGGTCGGCCACGAAC
CAGCTCTACATTGCCGAGCTGGACCGCATCGTCTTGTCCGACAAAGTCGC
CACCCGGGCCTTCTTGAACCCGCGAGAGGTCAGAAAGACGGCCATCACGA
CGCGGATAATGCAGCTGGTGCACGAAGTGCTGAGCAAGGGGATCCACATC
ACCAAGCGGGACATGTTTTACACGGACGTGAAGCTGTTCCGGGACCAGAA
GGATTCCGACGTGGTGCTCGACGACGTGGCATGCATGCTCGGGTGCACGC
GCTCCTGCCTGAACGTGGTCGCCTCGGAGAAGGGCCTGGTCGTGGGCCGC
GTCCAGTTCGAGGAGGATGGCGACTTCATCGACTGCACGCGCATGGGGGT
GGGGGGCAAGGCCATCCCGCCCTACGTTGACAAGATCGCGTGCATCCAGA
GCGACGCCAAGTTCATCCTCCTCGTCGAGAAAGAGGCGGCCTACATGCGC
CTGGCAGAGGACCGCTTCTACAACAAGTACCCCTGCATCGTCATCACGGC
CAAGGGCCAGCCCGACGTGGCCACCAGACTCTTCCTGAAGAAGCTCAAGA
CAGAGCTGCATATTCCGGTCCTGGGTTTGGTCGACTCCGATCCCTACGGC
CTGAAGATCCTCTCCGTCTACATGACAGGCTCCAAAAATATGTCCTACGA
TTCGGCCTCGCTCACGACGTCGGACATCAAGTGGCTGGGAGTGCGGCCGT
CCGACCTGGACAAGTACGGGATCCCGCCCCAGTGCCGTCTGGATATGACG
GATCACGATATGCGCACAGGACGCCAGCTCCTTCAGGAGGATTTCATCCA
GAAGAACCCAGAATGGGTCAAGGAGTTGCAGCTGATGCTGAAGATGAAGA
AAAAGGCTGAGATACAGGCCTTGTCCGCCTTTGGTTTCCAATACATCACG
GAGGACTACTTGCCTCGGAAACTGGAGAAGGGGGATTGGATTTAGCTCAT
TATGGTGACAACATGCGACTATGTACAGTCGACCGCGGGGGGCCAGGTTG
CAGGCTTAAAGGGCTCTGTAACGTGAAGATATGAGCAATAAGGCGTTGGG
TATGACCGAGGAAGTACACGTGATGTAAAGAAGCACCTCGAGACGAAGAG
GAACCCAGGACCTCTGACCAACTACATGACGACAGCTTGTGTAGCGATGA
GAAACAGTGATGAAATCCAGCGACGGAACTGAGTACTCCGTACCGTGAGA
CAGCATGTTTCCATTTCTTCTTTTAGCCCACAATTTGACCATTCC

protein sequence of rna5225

>rna5225-protein ID=rna5225-protein|Name=rna5225|organism=Nannochloropsis gaditana|type=polypeptide|length=652bp
MKRTSASYILRKAGATGTQRPRVHHYPFCPSERVFNGSVATRAGAIVTSR
RRPRIALGGGEMRSSLCFFVARPSGGRDYPRLTSQLPYHASRAFSSQTSQ
IEKHDAPGDDDKQGAGPVRNDSDDEHSTYSTAGYEGKRSDRPNHNSKITA
AHIVKQRQRKVCQISSGATLEEAIKILASNNANTSMVYNERTPGGAKEVV
GIFTAQDVIKTLSKQADKAEALQSLVKNAMTPMSRVIYCSPDDTLEKVQY
IMVELQIRTLPVVKDGVIYGIITLGDVINHHYSSEEIGGKKAFIKGVAGR
LGLPSGTQVASHVVKEGVKKSIKWKVGVAALPHPFKRRDGVAASLRLHGP
KDYATDLDLSEDASFVLNLPWPHEHGDEATYVGIADGVGSWREHGVDPRE
YSHRLMQLCEQFIRSMAPKAPNLVTPMVRPLDVLSSAWETITKEKVVGSS
TACIATLDMELNQLSFCNVGDSGIIIMRHIDSDVAGYMRDKTTPRPLRTN
DFRIAFVSRQQLRSFNLPYQMGYTNTQPENCFDTPSDADNSSIPIMRGDV
IIMGTDGLFDNVELDEICSIALAWEQKWFGSGAHSSGLRASDFPEESVQE
LAMTLCRRARELSLDQKRDSPFAILAKENDIMWGGGMPDDCTIFAMRVVK
TT

mRNA from alignment at CM002465.1:470631..473143-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5225 ID=rna5225|Name=rna5225|organism=Nannochloropsis gaditana|type=mRNA|length=2513bp|location=Sequence derived from alignment at CM002465.1:470631..473143- (Nannochloropsis gaditana)
ACAGCTTTACAGTCGTAGTCTGCAGGGCTCCTCCGCCCAAATACCTTATA
TGTCAAGGTCATTGTCTGCTCGCGCCGTCCCTGTCCTCGAGCGTGTGCGC
AAAGTTTTCGTGGAATTAAAAGGGCTGTGCACGACAACATTCTAACCGAC
GTGCTCTCTTGAATCATACCAGGGAAAGGCCTTACGGTGGGCTAGGGCTT
CAAAAGTGGAGCATACTCTACACTGTAGATGAAGCGGACTTCAGCCTCCT
ACATACTTCGTAAAGCAGGCGCGACGGGCACCCAGCGGCCTCGTGTCCAC
CATTACCCTTTCTGTCCCTCCGAGCGTGTCTTCAACGGTAGCGTAGCGAC
GCGCGCGGGCGCCATTGTCACAAGCCGGAGGCGGCCCAGAATAGCCCTTG
GTGGAGGAGAAATGCGTTCTTCGCTGTGTTTCTTTGTTGCGAGGCCAAGT
GGTGGACGCGATTACCCGCGCTTGACTTCGCAGCTCCCCTACCACGCATC
CCGTGCTTTTAGCTCCCAAACCTCCCAAATCGAAAAGCACGACGCTCCAG
GAGACGATGATAAGCAAGGCGCGGGCCCTGTCAGAAATGATAGTGACGAT
GAGCACTCGACGTACTCAACAGCAGGGTACGAAGGCAAAAGGTCGGACAG
GCCAAACCATAATAGCAAAATTACGGCGGCGCATATAGTCAAGCAGCGGC
AACGAAAGGTGTGTCAGATAAGTAGCGGAGCCACATTGGAAGAGGCCATT
AAAATTTTAGCATCCAACAATGCCAACACTTCAATGGTATACAATGAACG
AACCCCGGGAGGCGCAAAGGAGGTGGTGGGGATCTTCACGGCGCAGGACG
TGATTAAGACACTGAGCAAGCAGGCGGACAAAGCAGAAGCGCTCCAGTCG
CTGGTCAAAAATGCCATGACGCCCATGTCGCGAGTTATCTATTGCTCGCC
CGATGACACGCTGGAGAAGGTCCAGTACATCATGGTGGAGTTGCAGATCA
GGACGCTGCCCGTGGTGAAGGACGGGGTCATCTACGGGATCATCACCCTG
GGGGACGTCATCAATCATCACTACTCCTCCGAGGAGATCGGGGGCAAGAA
GGCCTTTATCAAGGGCGTGGCGGGTCGGCTGGGTTTGCCGAGCGGCACGC
AGGTGGCCTCGCACGTGGTCAAGGAGGGCGTCAAGAAGAGCATTAAGTGG
AAGGTGGGCGTGGCGGCTCTGCCCCACCCCTTCAAGCGTCGGGATGGCGT
GGCTGCGAGCCTCCGTCTCCATGGCCCCAAAGACTACGCCACGGACCTAG
ATCTATCGGAGGACGCCTCCTTCGTGCTGAACTTGCCCTGGCCCCACGAG
CACGGGGACGAGGCGACCTACGTGGGCATCGCGGACGGAGTGGGGTCCTG
GCGGGAGCATGGGGTGGATCCGCGCGAGTATTCGCACCGACTCATGCAGC
TCTGCGAGCAGTTCATCCGCTCCATGGCTCCCAAGGCGCCCAACCTGGTA
ACGCCGATGGTGCGGCCCCTGGACGTGCTCTCGAGTGCCTGGGAGACCAT
CACCAAGGAGAAGGTGGTGGGCTCGAGCACGGCCTGTATCGCGACGCTCG
ACATGGAGCTGAACCAGCTCTCCTTCTGCAACGTGGGGGACAGCGGGATT
ATCATTATGCGGCACATTGACTCGGACGTAGCGGGCTACATGCGCGATAA
GACGACTCCGCGGCCCCTGCGCACCAACGACTTCCGTATCGCCTTTGTCT
CGCGGCAGCAGCTCCGCTCCTTCAACCTTCCGTACCAAATGGGTTACACT
AACACGCAGCCCGAAAATTGCTTCGACACGCCCTCGGACGCGGACAATTC
CTCCATTCCCATCATGAGGGGTGACGTCATCATAATGGGCACGGATGGTC
TCTTCGACAATGTGGAGCTCGATGAGATCTGTTCTATCGCCCTCGCTTGG
GAGCAGAAGTGGTTTGGGAGTGGCGCCCACTCCAGTGGCCTTCGCGCCTC
TGACTTTCCTGAAGAGAGCGTCCAAGAGCTGGCCATGACACTGTGCCGGC
GCGCGCGGGAGCTGAGCCTGGACCAAAAACGAGACTCCCCCTTCGCGATC
TTGGCCAAGGAGAACGACATCATGTGGGGAGGGGGCATGCCCGATGACTG
TACCATCTTTGCCATGCGGGTGGTCAAGACAACTTAAAGGCACATGCGGG
GTATGAGTAAGGACAGGGAAAGCGACATGGCTTGTCAAGGATTCACTGCG
CATGCGCTTCATGCCTCTGAGATCAGTAGCCACTAGTATGGCTCTGGTAA
ATGTATGGGTGCACTTGCGTGTCTGCAGCTTTTAACAGGCTCACAATAGG
GACACGTGACATGTACTGGCGATTCAGATCGGGGAGAGTCAAAAATAACT
AAAACATTGTAAGGATTACAGTGGAATGGTCAAATTGTGGGCTAAAAGAA
GAAATGGAAACATGCTGTCTCACGGTACGGAGTACTCAGTTCCGTCGCTG
GATTTCATCACTG

Coding sequence (CDS) from alignment at CM002465.1:470631..473143-

>rna5225 ID=rna5225|Name=rna5225|organism=Nannochloropsis gaditana|type=CDS|length=1959bp|location=Sequence derived from alignment at CM002465.1:470631..473143- (Nannochloropsis gaditana)
ATGAAGCGGACTTCAGCCTCCTACATACTTCGTAAAGCAGGCGCGACGGG
CACCCAGCGGCCTCGTGTCCACCATTACCCTTTCTGTCCCTCCGAGCGTG
TCTTCAACGGTAGCGTAGCGACGCGCGCGGGCGCCATTGTCACAAGCCGG
AGGCGGCCCAGAATAGCCCTTGGTGGAGGAGAAATGCGTTCTTCGCTGTG
TTTCTTTGTTGCGAGGCCAAGTGGTGGACGCGATTACCCGCGCTTGACTT
CGCAGCTCCCCTACCACGCATCCCGTGCTTTTAGCTCCCAAACCTCCCAA
ATCGAAAAGCACGACGCTCCAGGAGACGATGATAAGCAAGGCGCGGGCCC
TGTCAGAAATGATAGTGACGATGAGCACTCGACGTACTCAACAGCAGGGT
ACGAAGGCAAAAGGTCGGACAGGCCAAACCATAATAGCAAAATTACGGCG
GCGCATATAGTCAAGCAGCGGCAACGAAAGGTGTGTCAGATAAGTAGCGG
AGCCACATTGGAAGAGGCCATTAAAATTTTAGCATCCAACAATGCCAACA
CTTCAATGGTATACAATGAACGAACCCCGGGAGGCGCAAAGGAGGTGGTG
GGGATCTTCACGGCGCAGGACGTGATTAAGACACTGAGCAAGCAGGCGGA
CAAAGCAGAAGCGCTCCAGTCGCTGGTCAAAAATGCCATGACGCCCATGT
CGCGAGTTATCTATTGCTCGCCCGATGACACGCTGGAGAAGGTCCAGTAC
ATCATGGTGGAGTTGCAGATCAGGACGCTGCCCGTGGTGAAGGACGGGGT
CATCTACGGGATCATCACCCTGGGGGACGTCATCAATCATCACTACTCCT
CCGAGGAGATCGGGGGCAAGAAGGCCTTTATCAAGGGCGTGGCGGGTCGG
CTGGGTTTGCCGAGCGGCACGCAGGTGGCCTCGCACGTGGTCAAGGAGGG
CGTCAAGAAGAGCATTAAGTGGAAGGTGGGCGTGGCGGCTCTGCCCCACC
CCTTCAAGCGTCGGGATGGCGTGGCTGCGAGCCTCCGTCTCCATGGCCCC
AAAGACTACGCCACGGACCTAGATCTATCGGAGGACGCCTCCTTCGTGCT
GAACTTGCCCTGGCCCCACGAGCACGGGGACGAGGCGACCTACGTGGGCA
TCGCGGACGGAGTGGGGTCCTGGCGGGAGCATGGGGTGGATCCGCGCGAG
TATTCGCACCGACTCATGCAGCTCTGCGAGCAGTTCATCCGCTCCATGGC
TCCCAAGGCGCCCAACCTGGTAACGCCGATGGTGCGGCCCCTGGACGTGC
TCTCGAGTGCCTGGGAGACCATCACCAAGGAGAAGGTGGTGGGCTCGAGC
ACGGCCTGTATCGCGACGCTCGACATGGAGCTGAACCAGCTCTCCTTCTG
CAACGTGGGGGACAGCGGGATTATCATTATGCGGCACATTGACTCGGACG
TAGCGGGCTACATGCGCGATAAGACGACTCCGCGGCCCCTGCGCACCAAC
GACTTCCGTATCGCCTTTGTCTCGCGGCAGCAGCTCCGCTCCTTCAACCT
TCCGTACCAAATGGGTTACACTAACACGCAGCCCGAAAATTGCTTCGACA
CGCCCTCGGACGCGGACAATTCCTCCATTCCCATCATGAGGGGTGACGTC
ATCATAATGGGCACGGATGGTCTCTTCGACAATGTGGAGCTCGATGAGAT
CTGTTCTATCGCCCTCGCTTGGGAGCAGAAGTGGTTTGGGAGTGGCGCCC
ACTCCAGTGGCCTTCGCGCCTCTGACTTTCCTGAAGAGAGCGTCCAAGAG
CTGGCCATGACACTGTGCCGGCGCGCGCGGGAGCTGAGCCTGGACCAAAA
ACGAGACTCCCCCTTCGCGATCTTGGCCAAGGAGAACGACATCATGTGGG
GAGGGGGCATGCCCGATGACTGTACCATCTTTGCCATGCGGGTGGTCAAG
ACAACTTAA

Synonyms

Publications