rna5220, rna5220 (mRNA) Nannochloropsis gaditana

Overview
Namerna5220
Unique Namerna5220
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length972
Alignment locationCM002465.1:462621..464920 +

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Properties
Property NameValue
Productprotein arginine N-methyltransferase
Orig transcript idgnl|cribi|Naga_100005g6.6706.mrna
Orig protein idgnl|cribi|Naga_100005g6.6706
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:462621..464920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g6gene5040Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5220rna5220-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25412.1cds5207Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5220 ID=rna5220|Name=rna5220|organism=Nannochloropsis gaditana|type=mRNA|length=972bp
ACGCCCGTCGCCCCCGCGGCCGCTATGCGCTCAACAGAGAAGTAGTTTTC
ATCATTGAAACGTTAACGATAACAGTGTGTTGTAGATCGTTATAGAGATC
TTTCAATGGTGGGATGTAATATTTGTGGGCTGGTGGAGAACGAAAGCTAT
TTCTCGGCGCAACGAGCGAAGGGAGGAGAGTGATAGAGCGGGCACCACGA
GATGTCTGTGCAGTGTGCCTACCCTGCCCGATAGACAGGGGCTTCATACT
ACATTGTGAATATTTTTTCTTCATAAAAAGTATCATCTCTAAGTATGTGC
TCGGTTCGGTCGATCCTGCCCTCCATTGTCTCACCACTTCCCTGCTTCTT
TCCTTAATCTGCTCAATCGTTTGCCCTTACTTTTCTCAGTAGGAAGAATG
GTCTGCATTCCCAAGGAGCGCAAGACCTTTTGCAAGGGCAAGAAATGTAA
GAAGCATACCGTACATAAGGTCACGCAGTACAAGGCTGGCAAGGCTTCCA
ATTATGCACAGGGCAAACGGCGCTACGACCGAAAGCAACAAGGGTACGGC
GGTCAGACGAAGCCCATCCTGCACAAGAAGGCCAAGACCACGAAGAAGGT
GACCTTGCGCCTCGAATGCAAGGAGTGCAAGACAAAGAAGCAGTTGGTCA
TCAAGCGCACCAAACACTTTGAGTTGGGCGAGAAGAAGAAGGCGACGGGA
CACCAGTACTAATGAGAAACCTGGCGGGCAAGCCTTGGAGACCGTTTACG
GTGTAAAGCAAGCAGAAAAGAAAAGGGTAAATCAGGACTCCGCGCTCACT
TCCATCGATGGAGGGAATTTGTGGAGTGTTTGTCAAAGCTGGGGCGAAAT
GTAGACCTACGCATCATGACGGCTATTTAGCAAGCTGTGCTATTGGTACG
CTAGAGGCTATTTTCCCTTTCTTTTTCCTTCATGCTTTCAAAAGAAATAA
CACGGTTACCTCTTACGAACTT
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protein sequence of rna5220

>rna5220-protein ID=rna5220-protein|Name=rna5220|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MTRSSVSLIEVGHLAAAVNAGSLANGEVPTKESTTPPSTSHSEDGKMSAV
SMTSADYYFDSYSHFGIHEEMLKDEVRTRSYMNAIMRNRHLFEGKVVLDV
GCGTGILSMFAAKAGAAKVIGVDCSTILEQAKQIVVANGLEDRITLIRGK
IEEIDLPVEKVDIIISEWMGYFLLYESMLDTVLYARDKWLVAGGLILPDK
ATLHVCAIEDEEYKQEKIDFWDDVYGFDMSAIKNLAILEPLVDVVEAKSV
VTHQSVVLELDLLTCSKADLTFSANFSLPARRNDYVHALVAYFDCAFTQL
HKPLTFSTGPFAKYTHWKQTVFYLQETLTVCAGEAVTGTISSAPNDRNPR
DLDIHIDLNFEGRHCKAHVSQDFRLR
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mRNA from alignment at CM002465.1:462621..464920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5220 ID=rna5220|Name=rna5220|organism=Nannochloropsis gaditana|type=mRNA|length=2300bp|location=Sequence derived from alignment at CM002465.1:462621..464920+ (Nannochloropsis gaditana)
TACCAAGCAAGTGGGTCGCATGTCTATTCATCCCCTACATTATATGTCTA
TCTGCGTCGTTGTTGCAGTTGACGGGTAGAGAAATAATATAAAAAACAAC
TCGGAAAGGATGAGGTAtcgtttccttttccttcgtgGTTATCGATGCCG
GAGCAAGAATTTCAAAAAGAGAAGGCCACTGACTGCTTGTTTGTCTGCTT
GTGCTATGTAAATCAAGCGCCCTAATGCCCCTGAGACCCCTGTCTATTTT
TCCGCACCTATGTGCATTCAAACCTCCCGTCCCCACCACACCTCCCTTAC
CCCGGCAGTGGTTGGCGGAGACAATCTGTCTAAGGGAATATGACGCGTTC
ATCAGTATCACTTATTGAGGTTGGCCATCTTGCAGCCGCAGTAAACGCTG
GTTCCCTTGCGAATGGCGAAGTGCCCACGAAAGAATCTACGACCCCCCCC
TCAACCAGCCATAGTGAAGACGGAAAAATGAGTGCAGTAAGCATGACGAG
CGCAGACTATTACTTTGACTCATATTCGCATTTCGGTATCCATGAAGAAA
TGCTGAAAGACGAAGTGCGCACGCGGAGCTACATGAACGCCATCATGCGA
AACAGGCACTTGTTTGAAGGCAAGGTGGTTTTGGACGTAGGGTGTGGCAC
TGGGATACTCTCCATGTTCGCTGCTAAGGCCGGCGCAGCTAAGGTAATTG
GCGTGGACTGCTCAACAATACTTGAGCAAGCAAAGCAGATTGTTGTAGCG
AACGGATTAGAAGATCGCATTACGCTCATCCGCGGCAAGATAGAGGAGAT
CGATCTGCctgtggagaaggtggacaTCATCATCTCAGAGTGGATGGGCT
ACTTCCTGCTCTACGAGTCCATGCTTGACACAGTCCTGTATGCGAGGGAC
AAATGGCTCGTCGCGGGAGGCCTAATCCTGCCCGACAAGGCGACCTTGCA
CGTGTGCGCtatcgaggacgaggagtacAAACAGGAGAAGATCGATTTTT
GGGATGACGTCTACGGCTTTGACATGTCTGCGATCAAGAATCTGGCCATT
CTGGAGCCCttggtggacgtggtggaggccaagagCGTGGTCACCCACCA
ATCGGTGGTACTGGAGCTGGACCTTCTGACTTGCAGCAAGGCAGATCTTA
CTTTCTCTGCCAACTTCTCTTTGCCCGCCCGCAGGAACGACTATGTCCAT
GCGCTGGTCGCCTACTTCGACTGCGCATTCACGCAGCTGCACAAACCCCT
CACTTTCTCCACAGGCCCCTTTGCCAAGTACACGCATTGGAAGCAGACGG
TATTCTACCTGCAGGAGACTCTGACAGTCTGTGCGGGGGAGGCCGTCACA
GGCACCATCAGCTCGGCGCCTAATGACCGCAACCCGCGCGATCTGGACAT
TCACATCGACCTCAACTTCGAGGGGAGGCACTGCAAGGCCCACGTTAGCC
AGGATTTCCGGTTGCGTTGAGCACGGAGTACTTGGGAAAAAGCAATCAGA
CAATGGGCTGACAGGCGAATCTTGCCTCAGGAGAAAGTAATTTTGGTGAA
AACTTAGGGTGTCTCTCTCATGTCAAATAACCCCACAattgacgaggagg
gcgaggagagcgaaGGGTTGCACGAAAGTGTGTATCATATTTCTGCTGAA
TCTTGAGAAGCATCAGTTCAAATTGATGACCAAAACGTGTTCTGTATAGC
AGCAAGTACCACGAGGAGAGAGTATCAAAGCTAGCTGGCTCCATTTTGTC
ATGCATTCTCTTACAAAATGCCATACTGACTTGCCAAGTTCGACTTCTGC
AACAGACGCCATCCTGCTACCTTGTGACACTCTTTGCTAACACAGTATCC
GAGCTTTGTGTACCCTCGACTTCCCGTCGACGTAAGCGACGCCTTCCAAG
CAGACCGTGCTTGTGGCCGACAAAACGGATCCAAGCGCGTGCACACCCTA
TATTCTTTATGTCTGCGCCGTTTTGTAActtccgctgcctccccagGCCC
GAAGAGGATAGTCAGGAGAAGAGCATACGACGCGGAGTAGGCAGAGTCCC
TCTTTGGTGGGCCCTTCTTTGAAGCTCTCATGACCGCATATCTTTACCGC
GTCAAGCACTCTCATGCGACATGCTTCTTAAAAAGGGATATTCCACTTCT
CATCACGCTCGTTGACGCAAAGTCTATGCCGCGGTCGTGCGGGGAGGGCC
TGCACTGAGAGACCATCATCTTGGTCCGCAACGCAACGTCACATCTTACG
TCTTTCTTCCTATGCAGCACTCAATGGGCAGCATCCCCGGCGAGAATGAC
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Coding sequence (CDS) from alignment at CM002465.1:462621..464920+

>rna5220 ID=rna5220|Name=rna5220|organism=Nannochloropsis gaditana|type=CDS|length=1131bp|location=Sequence derived from alignment at CM002465.1:462621..464920+ (Nannochloropsis gaditana)
ATGACGCGTTCATCAGTATCACTTATTGAGGTTGGCCATCTTGCAGCCGC
AGTAAACGCTGGTTCCCTTGCGAATGGCGAAGTGCCCACGAAAGAATCTA
CGACCCCCCCCTCAACCAGCCATAGTGAAGACGGAAAAATGAGTGCAGTA
AGCATGACGAGCGCAGACTATTACTTTGACTCATATTCGCATTTCGGTAT
CCATGAAGAAATGCTGAAAGACGAAGTGCGCACGCGGAGCTACATGAACG
CCATCATGCGAAACAGGCACTTGTTTGAAGGCAAGGTGGTTTTGGACGTA
GGGTGTGGCACTGGGATACTCTCCATGTTCGCTGCTAAGGCCGGCGCAGC
TAAGGTAATTGGCGTGGACTGCTCAACAATACTTGAGCAAGCAAAGCAGA
TTGTTGTAGCGAACGGATTAGAAGATCGCATTACGCTCATCCGCGGCAAG
ATAGAGGAGATCGATCTGCctgtggagaaggtggacaTCATCATCTCAGA
GTGGATGGGCTACTTCCTGCTCTACGAGTCCATGCTTGACACAGTCCTGT
ATGCGAGGGACAAATGGCTCGTCGCGGGAGGCCTAATCCTGCCCGACAAG
GCGACCTTGCACGTGTGCGCtatcgaggacgaggagtacAAACAGGAGAA
GATCGATTTTTGGGATGACGTCTACGGCTTTGACATGTCTGCGATCAAGA
ATCTGGCCATTCTGGAGCCCttggtggacgtggtggaggccaagagCGTG
GTCACCCACCAATCGGTGGTACTGGAGCTGGACCTTCTGACTTGCAGCAA
GGCAGATCTTACTTTCTCTGCCAACTTCTCTTTGCCCGCCCGCAGGAACG
ACTATGTCCATGCGCTGGTCGCCTACTTCGACTGCGCATTCACGCAGCTG
CACAAACCCCTCACTTTCTCCACAGGCCCCTTTGCCAAGTACACGCATTG
GAAGCAGACGGTATTCTACCTGCAGGAGACTCTGACAGTCTGTGCGGGGG
AGGCCGTCACAGGCACCATCAGCTCGGCGCCTAATGACCGCAACCCGCGC
GATCTGGACATTCACATCGACCTCAACTTCGAGGGGAGGCACTGCAAGGC
CCACGTTAGCCAGGATTTCCGGTTGCGTTGA
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Synonyms
Publications