rna5213, rna5213 (mRNA) Nannochloropsis gaditana

Overview
Namerna5213
Unique Namerna5213
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1661
Alignment locationCM002465.1:437683..439384 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100207g2.9443.mrna
Orig protein idgnl|cribi|Naga_100207g2.9443
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:437683..439384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100207g2gene5033Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5213rna5213-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25477.1cds5201Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5213 ID=rna5213|Name=rna5213|organism=Nannochloropsis gaditana|type=mRNA|length=1661bp
TGTACAAATTTCCGTGCCCATAAACATCTTCAAGTACTCAAATTTCACAT
CCTTACAGGAAGCACGCGATCGCAGTTGAAACTTTCCCCTGTTCCAGTCG
TGCTTGGAAGAAAGCGTGTGGTACAAGCCAATTTTTGTTGTGGATTGAAA
GACGGCTGCTGGAGGAAGGACAAAAAGCTCACGACCGGCAGTCAGTAGCT
GGCCCCTTCTCTAGCACGTGGCCAGACGGCGGAGACAGTATGCACGAGGG
CTATGGTTATACCTCCGATCATTATCGCATTCAACGGCCACAAAATAGTC
AGGACAACTACGGGAGAGCAGTAATCCGTGTGAAGAAGGAGCTTCAGCAG
AGCGAGTTGCCCCCCAACTGCTCTGTCCAGCCCTGGGCGAGCAGAAAATT
TGGTACAAAACAATGCAACGCCGATCCTAAATGTAGCAATGCACCCGTAG
ACTTTCAAAAGCTGCTTCATTGGCAGGTGACCATGCTAGGGCCGCGGGAA
AGCCCTTTCGAAGGCGTACCCCTTCTCTTCGAGCTGGAAGTGCCCCCTTC
CTACCCCTTCAAGCCGCCCCGTGTCACCTGCCACTCCTGCTGTTGGCATC
CCAACGTGTGCGCCTCGACAGGGCAAGTCATCCTGCCTATCATCGGGGAA
GACTGGCGGCCTACACTGTCGCTCAGCACCCTCATCTTCGGCATCCATCT
CGCGCTCTTGGAAGCTAATGTTGACGTGGCAGTCAATTCGGCTGCAGCAG
AAGCCTACGTGCACCACACGGATCTTTACCACGCACAAGCCAGAGAAATG
CTGAAAGGGCAAGCTGTGCGGAGGACCAGCGCTGGCGACAAAAGAGGCCG
GACTACGAGCACGCTTCCGGAGCTTCCGTCGTTCGCGTCTCACCCCGCCG
CTGAGGCCATATCTGTGCCGTCCGGGTCAAGCGCAAGCACGAGTATGGAC
ACGCTTGTCAGCACATGTGAGCTTGACTGCTCTGCGCGAAAACGCAAAGC
TTTAAACGAGACCGAACCGCCTGAGCGGGGCTTGGAGGCCATGTGCATCG
ATGAAAAGTTCGAAGACTTCCACACCCATGATAGCGTCCGCCCCGACCCA
GGCTCAGGAGGGTCTCGAGCTTTGTCGGTTGCATCCTTTATACAGCAGGA
GCCTCCATCTATGGAAATGGAGGAGAAATTTGCCTCCCGCTCGAGACATA
CGCAGCATAGCAAGAGAGCTCGGAGTTTTGGGGGCCAAGGGGGGGGACTA
GGAGGGGCTGGGGAATCGCATGCTGGATTTGCGGCGATGGCACAAGCTGC
AGGGATAGGTGGACAGCAGCGAAGCCGCGTTGGGGATCTGGTAGCCTTTA
ATCAAAGCCTCCCGTTTTCGATTGTTATGACTGATGGGATGAAGGCACCC
CCCCCGGCAAGCTAGACTCCGAAGGGAGGAAGAGAGAGCGCAGAAGGCAA
ACTCGGAGGTAAAAAAGGCAGAACAGTCTATCTAAGGTTGTGAAAAGCTG
TCGTGTACATAGAGGTGACAATTTCCCGAGCACGCGCAGTCACATGCGGC
AGCACAGGGACACCCTGGGGGTATGTGGGGCATGCGTCCCACAGAGTAAC
AGAATAAAATCTTAGGCTAGCCTAAGCTTTCTTTAAATCATGCAGGTCAA
TCTTTTTTTTT
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protein sequence of rna5213

>rna5213-protein ID=rna5213-protein|Name=rna5213|organism=Nannochloropsis gaditana|type=polypeptide|length=255bp
MRASFRVVLFAAVLGLVAASNTLLPRTMWERRARTDKRRAENLGEKTIPT
STDELREMLKINEGSLSSFSKVAMDLVSKVDFASADPQLFDRMFSTFKIL
KQSPAYTDAMKPDSGLDMTNTATKSKVLADAVGQLINLGVNLRGGMASVN
SKEGGINNKVLEFLRNGDEATLALAEKVKAGDSSAIWDLQQKFMSAEFPG
LNLKELPDDDFIKAARTLFTKDEGLSGLIGEENTLEVLMDEDLLFGNNPT
LQGLI
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mRNA from alignment at CM002465.1:437683..439384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5213 ID=rna5213|Name=rna5213|organism=Nannochloropsis gaditana|type=mRNA|length=1702bp|location=Sequence derived from alignment at CM002465.1:437683..439384- (Nannochloropsis gaditana)
GTTATTTATTTTTGATGTAGTCGGCGGGCTGTAAGGGAGATATGCAGAGA
GAGCCTATCGCAAATCTCTCACGGCCCATGTCGTTGACAAAAGCTCCTCA
CACGTTCCGGCCTTTCATACTTTTCCCCCTTACGCTTGTAGACACTCACA
CCCAGTTAGTGTAATATATACTCACGGAGTTTTGGAAAAAGGATGCGCGC
TTCCTTCCGGGTAGTCCTCTTCGCCGCGGTCTTGGGATTGGTGGCTGCAT
CCAATACTTTGCTACCCAGAACGATGTGGGAACGCAGGGCTCGGACTGAT
AAGCGCCGCGCTGAGAATCTAGGTGAAAAAACGATTCCAACAAGTACAGA
TGAACTTCGAGAAATGCTTAAGATCAATGAGGGCTCTCTATCGTCATTCA
GCAAGGTGGCCATGGACCTCGTCAGGTAACAAACGATAAGTAGCGTTTTG
AGAAGCCAGTCAGCGAGTTCGATGTCGTTATGTTTTTTGGGCTCCGGCCC
AGCAGTCTCCAGTACATTCCTTATACTTCAGCCAATTGGGTGTATCACTT
TTCATCCTCTTCTCCTCGTTTTGCACTGCAGCAAGGTAGACTTTGCTTCC
GCGGACCCGCAGCTCTTCGACCGGATGTTCAGCACTTTCAAGATTCTGAA
GCAGTCTCCCGCTTATACAGATGCCATGAAACCTGACTCTGGACTTGATA
TGACAAATACGGCCACGGTGCGTTTCTGACAGGGATAAAAGGGACGATGC
GACCCCACGTGGTAAAGAATGGATGCTTTTCAATGTACCCTCAACATTTC
CTGGACCCTCCTCTTTGATACCACAGAAAAGCAAAGTACTCGCCGATGCC
GTTGGACAACTCATTAACCTTGGCGTGAATTTGCGAGGAGGTATGGCGTC
GGTCAACTCGAAGGAAGGTGGAATCAACAACAAGGTCTTGGAGTTCTTGA
GGAATGGGGATGAGGCCACGCTTGCTCTGGCCGAGAAGGTGAAAGCGGGA
GATAGCTCAGCGATCTGGGACCTTCAACAAAAATTCATGTCGGCGGAATT
CCCGGGCTTGAATTTAAAGGAACTGCCGGACGACGACTTCATCAAAGCCG
CCCGCACCCTCTTTACCAAGGACGAGGGTCTGAGCGGGCTGATCGGCGAG
GAGAACACCCTGGAGGTGCTCATGGACGAAGACCTTCTCTTCGGAAACAA
CCCCACGCTGCAAGGACTCATCTAAAAGATGGGCGAGTGGACGAAAACTT
GACGAGAGGAGCGGTGGGGGCGGGAGAAAGTTGTAGGGAGGCCAGAGGGG
CGGGACAGGTGGCTCGGAAGCAGGGTGGGTAGCGCCCCGAATCAGCAATA
TGGTTTTCCGTTGGGCTGAGAATGAATAGGATGGGGCACTGACACCCCTG
TGCAGGAGGGACGGGTATGAGTGTTTGTGTGATGAATACAGCGCAGGAGC
GAGTGCTGCAAGAGGGATAATCAGGAGAGAAGTGGGCTGCTCCATAGAAG
ATTCATCGATGGGGGGGCTGGCAACTCCTGTGAAGGAGGCTCAGAGCCAA
TGACTGGGCAGTCGAGCCGGAGAGAAATGAAATACCTCGCGGCGACGATG
TCATGACAAAAGAATCAAACCCAAACGTTAGCCGGCAACGGTCACTTAGC
ATAGCAATCACAAACTTTAGCTAGCATTATGAAAAAAAAAAGATTGACCT
GC
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Coding sequence (CDS) from alignment at CM002465.1:437683..439384-

>rna5213 ID=rna5213|Name=rna5213|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at CM002465.1:437683..439384- (Nannochloropsis gaditana)
AAAAGCAAAGTACTCGCCGATGCCGTTGGACAACTCATTAACCTTGGCGT
GAATTTGCGAGGAGGTATGGCGTCGGTCAACTCGAAGGAAGGTGGAATCA
ACAACAAGGTCTTGGAGTTCTTGAGGAATGGGGATGAGGCCACGCTTGCT
CTGGCCGAGAAGGTGAAAGCGGGAGATAGCTCAGCGATCTGGGACCTTCA
ACAAAAATTCATGTCGGCGGAATTCCCGGGCTTGAATTTAAAGGAACTGC
CGGACGACGACTTCATCAAAGCCGCCCGCACCCTCTTTACCAAGGACGAG
GGTCTGAGCGGGCTGATCGGCGAGGAGAACACCCTGGAGGTGCTCATGGA
CGAAGACCTTCTCTTCGGAAACAACCCCACGCTGCAAGGACTCATCTAAC
AAGGTAGACTTTGCTTCCGCGGACCCGCAGCTCTTCGACCGGATGTTCAG
CACTTTCAAGATTCTGAAGCAGTCTCCCGCTTATACAGATGCCATGAAAC
CTGACTCTGGACTTGATATGACAAATACGGCCACGATGCGCGCTTCCTTC
CGGGTAGTCCTCTTCGCCGCGGTCTTGGGATTGGTGGCTGCATCCAATAC
TTTGCTACCCAGAACGATGTGGGAACGCAGGGCTCGGACTGATAAGCGCC
GCGCTGAGAATCTAGGTGAAAAAACGATTCCAACAAGTACAGATGAACTT
CGAGAAATGCTTAAGATCAATGAGGGCTCTCTATCGTCATTCAGCAAGGT
GGCCATGGACCTCGTCAGAAAAGCAAAGTACTCGCCGATGCCGTTGGACA
ACTCATTAACCTTGGCGTGAATTTGCGAGGAGGTATGGCGTCGGTCAACT
CGAAGGAAGGTGGAATCAACAACAAGGTCTTGGAGTTCTTGAGGAATGGG
GATGAGGCCACGCTTGCTCTGGCCGAGAAGGTGAAAGCGGGAGATAGCTC
AGCGATCTGGGACCTTCAACAAAAATTCATGTCGGCGGAATTCCCGGGCT
TGAATTTAAAGGAACTGCCGGACGACGACTTCATCAAAGCCGCCCGCACC
CTCTTTACCAAGGACGAGGGTCTGAGCGGGCTGATCGGCGAGGAGAACAC
CCTGGAGGTGCTCATGGACGAAGACCTTCTCTTCGGAAACAACCCCACGC
TGCAAGGACTCATCTAACAAGGTAGACTTTGCTTCCGCGGACCCGCAGCT
CTTCGACCGGATGTTCAGCACTTTCAAGATTCTGAAGCAGTCTCCCGCTT
ATACAGATGCCATGAAACCTGACTCTGGACTTGATATGACAAATACGGCC
ACGATGCGCGCTTCCTTCCGGGTAGTCCTCTTCGCCGCGGTCTTGGGATT
GGTGGCTGCATCCAATACTTTGCTACCCAGAACGATGTGGGAACGCAGGG
CTCGGACTGATAAGCGCCGCGCTGAGAATCTAGGTGAAAAAACGATTCCA
ACAAGTACAGATGAACTTCGAGAAATGCTTAAGATCAATGAGGGCTCTCT
ATCGTCATTCAGCAAGGTGGCCATGGACCTCGTCAGAAAAGCAAAGTACT
CGCCGATGCCGTTGGACAACTCATTAACCTTGGCGTGAATTTGCGAGGAG
GTATGGCGTCGGTCAACTCGAAGGAAGGTGGAATCAACAACAAGGTCTTG
GAGTTCTTGAGGAATGGGGATGAGGCCACGCTTGCTCTGGCCGAGAAGGT
GAAAGCGGGAGATAGCTCAGCGATCTGGGACCTTCAACAAAAATTCATGT
CGGCGGAATTCCCGGGCTTGAATTTAAAGGAACTGCCGGACGACGACTTC
ATCAAAGCCGCCCGCACCCTCTTTACCAAGGACGAGGGTCTGAGCGGGCT
GATCGGCGAGGAGAACACCCTGGAGGTGCTCATGGACGAAGACCTTCTCT
TCGGAAACAACCCCACGCTGCAAGGACTCATCTAACAAGGTAGACTTTGC
TTCCGCGGACCCGCAGCTCTTCGACCGGATGTTCAGCACTTTCAAGATTC
TGAAGCAGTCTCCCGCTTATACAGATGCCATGAAACCTGACTCTGGACTT
GATATGACAAATACGGCCACGATGCGCGCTTCCTTCCGGGTAGTCCTCTT
CGCCGCGGTCTTGGGATTGGTGGCTGCATCCAATACTTTGCTACCCAGAA
CGATGTGGGAACGCAGGGCTCGGACTGATAAGCGCCGCGCTGAGAATCTA
GGTGAAAAAACGATTCCAACAAGTACAGATGAACTTCGAGAAATGCTTAA
GATCAATGAGGGCTCTCTATCGTCATTCAGCAAGGTGGCCATGGACCTCG
TCAG
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Synonyms
Publications