rna5211, rna5211 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5211
Unique Name	rna5211
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2742
Alignment location	CM002465.1:433613..435902 +

Link to JBrowse

Properties


Property Name	Value
Product	trna-splicing ligase
Orig transcript id	gnl\|cribi\|Naga_100207g4.9446.mrna
Orig protein id	gnl\|cribi\|Naga_100207g4.9446
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:433613..435902 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100207g4	gene5031	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5211	rna5211-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25480.1	cds5199	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:433613..435902+
coding sequence from alignment at CM002465.1:433613..435902+

mRNA sequence

>rna5211 ID=rna5211|Name=rna5211|organism=Nannochloropsis gaditana|type=mRNA|length=2742bp
ACGTCTTTGCTACACACGTCACTCACTTCCTAACCAGAGGCTCGTATTGA
TAAGCTCGACAACACTTGCAAAATCTCTCTTCTTGTATAGATAAAGCGCC
ATGACATTGGCGGAACGTTCAGGGACTGAGGGCGTACGGCTGTGTAGGCG
GGACATGCTGGCAGCAGCTAGCGACCCGCCCCCACGTTCTTATTTATGCA
CGATCACTGGGACTGACGGGGACACTCTTTCTAACACATATTATAGCATG
TGGACGCTGCATATTCTTGACGGGGTTCCGATGTTTGAAAATTTTACTCT
ACCTGCGGACGCATAGTCTCCTGGCGCCTCGTCTTTCCCAACGTGATACT
ATGGACCCCCCCAGCTCCTCCACCATCGATGCCCTGAAAGCCCTGAATTG
TAGCGCGCAGCACTTCGTTGCGGTTGTGGCTTCATGGCTGGTTACTGCCT
CGACGCCATCCACATCGCAAAACACCATTGAATTCCCGACATATATGTCA
TTCAACTACACCATGCACCACTCTCCTCCCTCACTCGGCGAAAAGGCCGC
AGCTGCTGAGGCTTTAGCCGAAAGTCAAACACAGTGTGGCAACGTCCCGC
GTCTGGCGTGCGGGGCCCTGGTGGAGGACGAGGCTACAATTGGAGCGAAG
CGCCTGGGCGAGTACTTGGTTCGACTGCTGCGGGGGGAGTCCCTGTCTGC
CCCTTCGACCTTACTGCAAGAGACGTCCGCGTTCGGGTGGCTCCCGGCCC
ACGCTTTTGTCCAACGTCACCTCGGTGAGGCTGACCATGTGCACTCGTGG
CCAAAGATGGGTAAAGAGCAATTAAAGCCGAGAAAAGCGTTCCGCATTGA
AGGGGGGGGGGGAAGTGGAGCGGGGTTCCAGGTGTACTGCGGGCGAAGTT
TGCTCGTATCGGCAGGCGGAGGTGGTGGAGGGGGCGTCGAGGGGAGGCTG
TTGTTGAGGAAGAAGGGGAGGTCGTATTCCATGGGGGGGGGCGGGGGGGG
CGGCGCTCAGTACCGGTGTCTGGAGGGTTTAAGTGGAGAGGAGGACGACG
CTGTCGGAAAAGGGGAAAAGCGCGGAAACGTGCGGGAAGCCGGGGAGCAA
CAAAAGCAGAAGATTTCGCTGAATCGGCTTGGAAAGTGGACGTCCGTGGG
CGGCGGAGGCGGGTGTGGCACTGAACGAGGGGGAACTGAGCGGCTGCATG
TCGCGGGGCTGGGCAGAGAGGAAAGTCAGCAGGGACAGAATCCAAGGCGT
GCCTACGCATCGCAATCGGACGGTGGGAGCCATCCAAGTAATGCCACTGG
AGACGTGGGGATCTTGTGCGGGCAAGCATTGGACGCTGGGACGCCGGGGA
AGAAGGAGCTGGACAAGGGCGCTCGGGCGCTGGCGGCCACCTTGCAGTGG
TGCCTGAGGGAGGGGCAGGCCTTGCGCATGACGGGCGGGGGCGGCGGAGG
AGGTGGCACTGCGGAATGCTGCGAGCCGATGCAGCTGGGCTATGGCTTCT
CTTTTGAGGTGGTGCTGGAAAGGGGGGGGGGACGGGCGCGCAGGGGGGAG
GGGCGCGAACCTAGGTGGGGAGGACGGGGGCTGGAGGGTAGGGGAGGGTC
GGCCTCTGAGCGCGGATAGCCTTAGCAGGGTGTCCGAGGCGGGGCGATGG
CAGGCCTTGAGGACGGGGAAGCAAGTGCAAGGCTTGAGCTCTCGGGCGAG
GAGCGGAACCGCGCCCGATGCCGCTTCCCATTCAGAAGCAGCCTTCCACA
CCCAAGATAGTGCGAGGATCAAGGGCGAGACAGCAGCCGTGGACGCCCAG
CTCCGGTACGACCCTCTATTCCGCTACCTGTACGAGGCTTCTCAGGCCTG
TCCTCGAGGCTTCCAGGACTGGTGTTGCCTGTGTACCAAGGCCAAGGCTG
CGCTTCGGAAGGACGAGCACAGAATCGAAAGGAGAGAATTCGACGAGAGG
AGTACCGCCTGGTTTACCCGCGTTACGTGCTGTCGGAAAGAGGAAACAGC
CGCCAGTGCGGGCGCTGCATCAGCCGGTGGGTCCAGGGTCGTTCCCCCGC
TGGGGCGCGGCTCCCATCCGTGGAGCCCTCAGGATGACCTTCCCGCAGAC
GGCCCCCCCGAGGCCTCGCTTGGTGCTAGAGGTCAAAGCAGCGAGGTAAG
GGCAGGCTGCGCTCTTGCGGTTGGGCGAGAAGGCCTTGTCGTAGTGCCTG
CAGCAGTTGCTCACCTGGACTCCTCTCCTCCAAGCGCCCCCTCGACGGCC
TTGGGCGTGGTCGCTGCCGTTGCCTCTGTCGGGTCCCTGAATCGGCACGA
GGCGGAGGTTCAACCCTCCTATCACGCGCAGCCAGTCTCGTGGCCGCTTG
ATTTCCGAAGCGACAGCTTCTCATCACCGGGTCGTCCCTCTTCTGCGTCC
TCCTCAGCTCCCTCTTCAGCCCACAATGCGCTCGTACGATGCTCACGGAC
TGATGTTCAGGCATGTCCGTGGACGTTCTGCTTTCTCGTCGTGAGCCTTC
TAGCCGCCGGGCTCGGACTCTTTCTTCGACGTGCTAGCTCTCGGCGGGTG
GAGAAGACAGGTTGCAAGGTGTGGACGCTTTGCCGAAGAATTGAGAGCAC
AAAGGAGGAAGTGGTGGAGGAGGAAGGGCGCGCGTTGTTGCCGCTGTCGT
CCACAGGGCCGAGGGGCTTACAAGAGCCGCGCTATGGTGCCACGGATGTT
TCACAGTGAGAGCCGTATAAAGAAGTATGTACTGAAAACAGA

protein sequence of rna5211

>rna5211-protein ID=rna5211-protein|Name=rna5211|organism=Nannochloropsis gaditana|type=polypeptide|length=510bp
MANGSVVRTFEEEMGFLHRETPTRFRIDKGCVPNMKVEGAFYVNTKLEEL
MFAELKQHTTAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFA
IGNVAAFAVADTEAIVSPGGVGFDINCGVRLIRTNLTEEDVRGKREKLTQ
SLFDHIPVGVGSKGVIPTSAADLEAALEMGMDWSLREGYAWAEDNEHCEE
NGRMRQADPTKVGMRAKKRGLPQLGTLGAGNHYAEIQVVEEIHDPRAAAR
MGIDQIGQVCVMIHSGSRGLGHQVATDALVEMERAMARDGILTNDRQLAC
ARIQSPEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFEATPDDLDM
HVIYDVSHNIAKVEEHMYQGRPKTLLVHRKGSTRAFPPNHPLIPVDYQFT
GQPVLIGGTMGTCSYVLTGTDKGLEETFGSTCHGAGRAQSRNKSRKTLEY
TEVLAALEEKGISIRVASPKLVMEEAPESYKDVTQVVDTCHEAGISRKAI
KLRPIAVVKG

mRNA from alignment at CM002465.1:433613..435902+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5211 ID=rna5211|Name=rna5211|organism=Nannochloropsis gaditana|type=mRNA|length=2290bp|location=Sequence derived from alignment at CM002465.1:433613..435902+ (Nannochloropsis gaditana)
AAACATCGGAACCCCGTCAAGAATATGCAGCGTCCACATGCTATAATATG
TGTTAGAAAGAGTGTCCCCGTCAGTCCCAGTGATCGTGCATAAATAAGAA
CGTGGGGGCGGGTCGCTAGCTGCTGCCAGCATGTCCCGCCTACACAGCCG
TACGCCCTCAGTCCCTGAACGTTCCGCCAATGTCATGGCGCTTTATCTAT
ACAAGAAGAGAGATTTTGCAAGTGTTGTCGAGCTTATCAATACGAGCCTC
TGGTTAGGAAGTGAGTGACGTGTGTAGCAAAGACGTCGCCTACTGTAGTT
AGTAACTTCTTGCCttgacctccccaccttcgtTTGCCACAGCTCCCCAC
AGCAACCTTGGGTGCCTTTCGTTGTACTTCGAATAAATTGCACGTTGAAT
AGTAGAGCAAGTATGTGAAGTCATCGGTCTCGTTTGTACTGGGTACACTC
GGCTTATCTCATCCGTTTTCACAACCCCCGCGAGCAGGGCCCGCCACACA
GCAAAGTCAATCGAGGATTGCACACAAGCATGGCGAATGGAAGCGTTGTG
CGCACatttgaagaagaaatgggaTTTCTTCACCGCGAGACGCCAACACG
ATTCCGCATTGACAAGGGCTGCGTGCCCAACATGAAGGTGGAAGGTGCCT
TCTACGTCAACACCAAATTAGAGGAGCTGATGTTCGCGGAGCTCAAGCAG
CATACAACAGCGGGTGGCGTCGGCGGATTTCTCCCAGCTGTGAAACAGAT
CGCAAATGTGGCGGCATTGCCGGGGATCGTGGGACGGGTAGGTGTGATGA
TTTAGAGGGAGGCGCATCTCTGTTTCTCGCGAGAGGGCTCATCGTAGCGC
GTTTTAGGACTCGAGAAGTCGCTCGCGTTCGTTTCTTactcatcttttcc
ccccgtTAGTCCATCGGTTTGCCCGATGTCCACTCCGGCTATGGTTTTGC
GATAGGCAACGTGGCCGCGTTCGCCGTTGCCGACACGGAGGCTATTGTCT
cgccggggggggtgggaTTCGACATCAACTGTGGTGTTCGCCTGATTCGG
ACCAATTTGACGGAAGAAGACGTGCGCGGAAAGCGAGAAAAGCTGACACA
GTCCCTGTTTGACCACATTCCCGTGGGCGTGGGGTCGAAAGGCGTCATTC
CGACCTCAGCGGCGGACTTGGAGGCCGCCTTGGAGATGGGCATGGACTGG
TCCCTGAGAGAGGGGTACGCCTGGGCGGAGGACAACGAGCACTGCGAGGA
GAACGGGCGTATGCGGCAAGCAGACCCGACCAAGGTGGGAATGCGGGCCA
AGAAGAGAGGCCTGCCGCAGCTGGGTACTCTGGGCGCTGGGAACCACTAT
GCAGAGAtccaggtggtggaggagatccaCGACCCGCGGGCGGCAGCGAG
GATGGGGATCGATCAGATTGGACAGGTATGTGTGATGATTCACTCGGGAA
GCCGGGGCTTGGGGCACCAGGTGGCCACTGACGCcttggtggagatggag
agggccATGGCCAGGGACGGCATCCTCACGAACGACAGGCAACTGGCCTG
CGCCCGGATCCAGAGTCCGGAGGGACAGAACTAcctggcggccatggcgg
ctGCCGCCAATTTCGCCTGGGTAAACCGGTCGAGCATGACCTTTTTGACG
CGGCAGGCCTTCGCGAAGATGTTCGAGGCGACGCCCGACGACCTGGACAT
GCACGTGATCTACGACGTCTCCCATAACATCGCCAAGGTGGAAGAGCACA
TGTACCAAGGGAGGCCCAAGACCTTGTTGGTCCACCGGAAAGGCTCCACG
CGCGCTTTCCCGCCAAATCATCCCCTCATTCCGGTGGACTACCAGTTCAC
TGGTCAGCCTGTCTTGATAGGGGGGACCATGGGCACATGCAGCTATGTAC
TCACAGGCACGGACAaaggcttggaggagacTTTCGGTAGCACGTGTCAC
GGGGCTGGGCGGGCGCAGAGTCGAAACAAGAGTCGGAAAACCCTGGAATA
CACGGAGGTgttggcggccttggaggagaaagggataTCTATTCGCGTCG
CTAGTCCGAAACtggtcatggaggaggcaccAGAGTCGTACAAGGATGTG
ACACAGGTAGTAGATACGTGTCATGAGGCTGGTATAAGCCGAAAAGCAAT
TAAACTTCGCCCGATCGCTGTTGTGAAGGGTTGAAAATAAACctctggga
gaggaagcagttAAGAAGTCATCGGACTCTCAAAAAGATGAAATGGACCG
TTGTAGAAGAAAGCACCAATAACACAGAAACTTCCATGGT

Coding sequence (CDS) from alignment at CM002465.1:433613..435902+

>rna5211 ID=rna5211|Name=rna5211|organism=Nannochloropsis gaditana|type=CDS|length=3066bp|location=Sequence derived from alignment at CM002465.1:433613..435902+ (Nannochloropsis gaditana)
ATGGCGAATGGAAGCGTTGTGCGCACatttgaagaagaaatgggaTTTCT
TCACCGCGAGACGCCAACACGATTCCGCATTGACAAGGGCTGCGTGCCCA
ACATGAAGGTGGAAGGTGCCTTCTACGTCAACACCAAATTAGAGGAGCTG
ATGTTCGCGGAGCTCAAGCAGCATACAACAGCGGGTGGCGTCGGCGGATT
TCTCCCAGCTGTGAAACAGATCGCAAATGTGGCGGCATTGCCGGGGATCG
TGGGACGGTCCATCGGTTTGCCCGATGTCCACTCCGGCTATGGTTTTGCG
ATAGGCAACGTGGCCGCGTTCGCCGTTGCCGACACGGAGGCTATTGTCTc
gccggggggggtgggaTTCGACATCAACTGTGGTGTTCGCCTGATTCGGA
CCAATTTGACGGAAGAAGACGTGCGCGGAAAGCGAGAAAAGCTGACACAG
TCCCTGTTTGACCACATTCCCGTGGGCGTGGGGTCGAAAGGCGTCATTCC
GACCTCAGCGGCGGACTTGGAGGCCGCCTTGGAGATGGGCATGGACTGGT
CCCTGAGAGAGGGGTACGCCTGGGCGGAGGACAACGAGCACTGCGAGGAG
AACGGGCGTATGCGGCAAGCAGACCCGACCAAGGTGGGAATGCGGGCCAA
GAAGAGAGGCCTGCCGCAGCTGGGTACTCTGGGCGCTGGGAACCACTATG
CAGAGAtccaggtggtggaggagatccaCGACCCGCGGGCGGCAGCGAGG
ATGGGGATCGATCAGATTGGACAGGTATGTGTGATGATTCACTCGGGAAG
CCGGGGCTTGGGGCACCAGGTGGCCACTGACGCcttggtggagatggaga
gggccATGGCCAGGGACGGCATCCTCACGAACGACAGGCAACTGGCCTGC
GCCCGGATCCAGAGTCCGGAGGGACAGAACTAcctggcggccatggcggc
tGCCGCCAATTTCGCCTGGGTAAACCGGTCGAGCATGACCTTTTTGACGC
GGCAGGCCTTCGCGAAGATGTTCGAGGCGACGCCCGACGACCTGGACATG
CACGTGATCTACGACGTCTCCCATAACATCGCCAAGGTGGAAGAGCACAT
GTACCAAGGGAGGCCCAAGACCTTGTTGGTCCACCGGAAAGGCTCCACGC
GCGCTTTCCCGCCAAATCATCCCCTCATTCCGGTGGACTACCAGTTCACT
GGTCAGCCTGTCTTGATAGGGGGGACCATGGGCACATGCAGCTATGTACT
CACAGGCACGGACAaaggcttggaggagacTTTCGGTAGCACGTGTCACG
GGGCTGGGCGGGCGCAGAGTCGAAACAAGAGTCGGAAAACCCTGGAATAC
ACGGAGGTgttggcggccttggaggagaaagggataTCTATTCGCGTCGC
TAGTCCGAAACtggtcatggaggaggcaccAGAGTCGTACAAGGATGTGA
CACAGGTAGTAGATACGTGTCATGAGGCTGGTATAAGCCGAAAAGCAATT
AAACTTCGCCCGATCGCTGTTGTGAAGGGTTGAATGGCGAATGGAAGCGT
TGTGCGCACatttgaagaagaaatgggaTTTCTTCACCGCGAGACGCCAA
CACGATTCCGCATTGACAAGGGCTGCGTGCCCAACATGAAGGTGGAAGGT
GCCTTCTACGTCAACACCAAATTAGAGGAGCTGATGTTCGCGGAGCTCAA
GCAGCATACAACAGCGGGTGGCGTCGGCGGATTTCTCCCAGCTGTGAAAC
AGATCGCAAATGTGGCGGCATTGCCGGGGATCGTGGGACGGTCCATCGGT
TTGCCCGATGTCCACTCCGGCTATGGTTTTGCGATAGGCAACGTGGCCGC
GTTCGCCGTTGCCGACACGGAGGCTATTGTCTcgccggggggggtgggaT
TCGACATCAACTGTGGTGTTCGCCTGATTCGGACCAATTTGACGGAAGAA
GACGTGCGCGGAAAGCGAGAAAAGCTGACACAGTCCCTGTTTGACCACAT
TCCCGTGGGCGTGGGGTCGAAAGGCGTCATTCCGACCTCAGCGGCGGACT
TGGAGGCCGCCTTGGAGATGGGCATGGACTGGTCCCTGAGAGAGGGGTAC
GCCTGGGCGGAGGACAACGAGCACTGCGAGGAGAACGGGCGTATGCGGCA
AGCAGACCCGACCAAGGTGGGAATGCGGGCCAAGAAGAGAGGCCTGCCGC
AGCTGGGTACTCTGGGCGCTGGGAACCACTATGCAGAGAtccaggtggtg
gaggagatccaCGACCCGCGGGCGGCAGCGAGGATGGGGATCGATCAGAT
TGGACAGGTATGTGTGATGATTCACTCGGGAAGCCGGGGCTTGGGGCACC
AGGTGGCCACTGACGCcttggtggagatggagagggccATGGCCAGGGAC
GGCATCCTCACGAACGACAGGCAACTGGCCTGCGCCCGGATCCAGAGTCC
GGAGGGACAGAACTAcctggcggccatggcggctGCCGCCAATTTCGCCT
GGGTAAACCGGTCGAGCATGACCTTTTTGACGCGGCAGGCCTTCGCGAAG
ATGTTCGAGGCGACGCCCGACGACCTGGACATGCACGTGATCTACGACGT
CTCCCATAACATCGCCAAGGTGGAAGAGCACATGTACCAAGGGAGGCCCA
AGACCTTGTTGGTCCACCGGAAAGGCTCCACGCGCGCTTTCCCGCCAAAT
CATCCCCTCATTCCGGTGGACTACCAGTTCACTGGTCAGCCTGTCTTGAT
AGGGGGGACCATGGGCACATGCAGCTATGTACTCACAGGCACGGACAaag
gcttggaggagacTTTCGGTAGCACGTGTCACGGGGCTGGGCGGGCGCAG
AGTCGAAACAAGAGTCGGAAAACCCTGGAATACACGGAGGTgttggcggc
cttggaggagaaagggataTCTATTCGCGTCGCTAGTCCGAAACtggtca
tggaggaggcaccAGAGTCGTACAAGGATGTGACACAGGTAGTAGATACG
TGTCATGAGGCTGGTATAAGCCGAAAAGCAATTAAACTTCGCCCGATCGC
TGTTGTGAAGGGTTGA

Synonyms

Publications