rna5210, rna5210 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5210
Unique Name	rna5210
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2285
Alignment location	CM002465.1:431157..433898 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100207g5.9439.mrna
Orig protein id	gnl\|cribi\|Naga_100207g5.9439
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:431157..433898 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100207g5	gene5030	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25473.1	cds5198	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5210	rna5210-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:431157..433898-
coding sequence from alignment at CM002465.1:431157..433898-

mRNA sequence

>rna5210 ID=rna5210|Name=rna5210|organism=Nannochloropsis gaditana|type=mRNA|length=2285bp
GAAGGCTCTAGTACACCTTGAGCGGAATCCAAACATTGTTCCTACTGCAA
GTGCCCCTCCTGACCTTTTCTCCTGAATCCCTATTTGGTAAACGATTGTC
ACTACTTGAGCATCTATTGAGGCATTTTTGTTGCGTAGTAGTTTCACTGG
CGTTTCAAAATATGAAAGGAATGCGTCTCGATCGCGCTTATTTTGCCTCT
GCCTCAGCCACACACCCTGCGCACTGTATCTTTGCCTTGCAGTTGGGTGC
AGCACTGCAAGCGAGGCTTCCTACTCGCCTTCCCCCCCGTTGCAAGCACA
TGTTTAGTGAAGCTGTGTTTACATGTATAGAGCATGGTCCTATGTTACGA
CCGAGTAGTCGTGTATATTCTTGCTCACGCTTGTTGCCTTACTAAATCAA
TACCGTATTCCCTGTCGCCCTCCCACCTGTCCCTGTTTGAACAGGAAGCC
GCCACCATGAAGTCCGCATTCTTCGTCTCCTCCCTCCTTGTTGGGGCCCA
AGCGTTCAACCCCACGCTTCCCTTGAATAACGCTTTCGTACAGCGCCAGG
CAGCCCGTGCCGAGCCCATTCGTGCTGTGAGGACCCGAGGCGACGTGGAC
ATGAAGTATCGCGTTGTGGTGGTCGGCGGGGGGCCCTCGGGGTCGTGCGC
CGCGGAGGAGCTTGCCAAGGACAAGAATATCGAGACCGTCTTGCTGGAGC
GAAAAATGGACAACGCCAAGCCGTGCGGCGGTGCTATCCCTCTGTGCATG
GTCTCCGAGTTCGACCTGCCCGCCGAGATCATCGACCGGAAGGTGCGCAA
GATGAAGATGATCAGCCCGACCAATCGCGAGGTGGACATCGGGCAGACCC
TCAAGCCCAACGAGTACATCGGGATGACACGGCGGGAGGTCCTGGACGGT
TTCCTCCGACAGCGCGCGGTGAACACGGGCGCCACTGCGATCAACGGCCT
GGTCACCAAGGTGGAGCTCCCCACTACCGAGGGAGGGCGGTACAAGATTC
ACTACTCCAATTTTGAGAAGGGAACGGGCGCGGCGGGGGTTCCCGAGACC
ATCGAGGCGGACGTGATCATCGGTGCGGACGGCGCCAATTCCCGCGTGGC
CAAGGCGATCGATGCTGGCGAGTACAACTACGCGATCGCCTTCCAGGAGC
GTATCAAGATCTCGGAGGAGAAGATGAACTTCTACGAGGAACTGGCAGAG
ATGTACGTGGGGGACGACGTGTCGCCCGATTTCTATGCCTGGGTCTTCCC
CAAGTACGACCACGTGGGGGTGGGCACTGGCACCGTCATCAACCGCCCCG
CGATCAAGATGTATCAGAAGGCCATCCGAGACCGAGCGGGGGACAAGATC
GCGAACGGGAAGATTATCAAGGTAGAAGCGCACCCGATTCCCGAGCACCC
CCGTCCCCGACGTGTGGTGGGCCGGGTGGCTCTGATCGGAGACGCGGCCG
GCTACGTGACCAAGTGCTCGGGAGAGGGCATTTACTTTGCCGCCAAGTCA
GGACGCATGGCCGCCCAGTCGATCCGAGAGCTCATGGCGGGAGGCACGCG
CTTGCCTACCGAGAAGGAGATCAAGGACACATACATCAAGGACTACGACC
GACTCTACGGCCCCACCTACACCGTGCTGGACATTTTGCAGCGCGTGTTC
TACTCCTCCAACGCGGCCCGCGAGGCCTTCGTGGAGCTCTGCGAGTCTGA
GTACGTCCAGAAGGTGACGTTTGACTCCTACCTGTACAAACGCGTACAAG
GAAACAACCCTGTAGAGGATATCAAGCTGCTATTCAAGACGATCGGGGCC
CTGATGCGCGGGAACGCTTTGGCCCCCCGCGACAAGCCCGTCTACAACCC
GGTGGAGAGCTTGAAGCGTCTGTAAGCTCGGTCGGGGTTTTGCAATGAGG
GCGAAGGCCTATGAATAGAGGGGCACGCGGCAAGTGAAAGGGACTGACAG
CAGAAGGACTGACCGCCTAAGCTTGAAGAGGGCAGAAGACGAAAAGCAAA
GCCGAACAAGCGCAAAGAAATTAGAGCAAGGCAATGGAGGCGGAGAAATT
GGAGGGTGGGATGCCCTCAGAGCAAGCTTGACAAATCAGGAGGGGAGAGG
AGGAGAAAAGGGAGGGATATTCCCAAGACGGGACCGGGTGCCAAGAAGCA
GCCGTGCCCTCGCACGCTGTCATAGATAGAGACTTCGACGAAGAGGACAA
ATAACCCTATAAAGAAAATCCTCACTGACCACACCATCACCTTCTTGCGT
CCATGCCTGAGAGATGTCTGTTTTCAGTACATACT

protein sequence of rna5210

>rna5210-protein ID=rna5210-protein|Name=rna5210|organism=Nannochloropsis gaditana|type=polypeptide|length=422bp
MDPPSSSTIDALKALNCSAQHFVAVVASWLVTASTPSTSQNTIEFPTYMS
FNYTMHHSPPSLGEKAAAAEALAESQTQCGNVPRLACGALVEDEATIGAK
RLGEYLVRLLRGESLSAPSTLLQETSAFGWLPAHAFVQRHLGEADHVHSW
PKMGKEQLKPRKAFRIEGGGGSGAGFQVYCGRSLLVSAGGGGGGGVEGRL
LLRKKGRSYSMGGGGGGGAQYRCLEGLSGEEDDAVGKGEKRGNVREAGEQ
QKQKISLNRLGKWTSVGGGGGCGTERGGTERLHVAGLGREESQQGQNPRR
AYASQSDGGSHPSNATGDVGILCGQALDAGTPGKKELDKGARALAATLQW
CLREGQALRMTGGGGGGGGTAECCEPMQLGYGFSFEVVLERGGGRARRGE
GREPRWGGRGLEGRGGSASERG

mRNA from alignment at CM002465.1:431157..433898-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5210 ID=rna5210|Name=rna5210|organism=Nannochloropsis gaditana|type=mRNA|length=2742bp|location=Sequence derived from alignment at CM002465.1:431157..433898- (Nannochloropsis gaditana)
ACGTCTTTGCTACACACGTCACTCACTTCCTAACCAGAGGCTCGTATTGA
TAAGCTCGACAACACTTGCAAAATCTCTCTTCTTGTATAGATAAAGCGCC
ATGACATTGGCGGAACGTTCAGGGACTGAGGGCGTACGGCTGTGTAGGCG
GGACATGCTGGCAGCAGCTAGCGACCCGCCCCCACGTTCTTATTTATGCA
CGATCACTGGGACTGACGGGGACACTCTTTCTAACACATATTATAGCATG
TGGACGCTGCATATTCTTGACGGGGTTCCGATGTTTGAAAATTTTACTCT
ACCTGCGGACGCATAGTCTCCTGGCGCCTCGTCTTTCCCAACGTGATACT
ATGGACCCCCCCAGCTCCTCCACCATCGATGCCCTGAAAGCCCTGAATTG
TAGCGCGCAGCACTTCGTTGCGGTTGTGGCTTCATGGCTGGTTACTGCCT
CGACGCCATCCACATCGCAAAACACCATTGAATTCCCGACATATATGTCA
TTCAACTACACCATGCACCACTCTCCTCCCTCACTCGGCGAAAAGGCCGC
AGCTGCTGAGGCTTTAGCCGAAAGTCAAACACAGTGTGGCAACGTCCCGC
GTCTGGCGTGCGGGGCCCTGGTGGAGGACGAGGCTACAATTGGAGCGAAG
CGCCTGGGCGAGTACTTGGTTCGACTGCTGCGGGGGGAGTCCCTGTCTGC
CCCTTCGACCTTACTGCAAGAGACGTCCGCGTTCGGGTGGCTCCCGGCCC
ACGCTTTTGTCCAACGTCACCTCGGTGAGGCTGACCATGTGCACTCGTGG
CCAAAGATGGGTAAAGAGCAATTAAAGCCGAGAAAAGCGTTCCGCATTGA
AGGGGGGGGGGGAAGTGGAGCGGGGTTCCAGGTGTACTGCGGGCGAAGTT
TGCTCGTATCGGCAGGCGGAGGTGGTGGAGGGGGCGTCGAGGGGAGGCTG
TTGTTGAGGAAGAAGGGGAGGTCGTATTCCATGGGGGGGGGCGGGGGGGG
CGGCGCTCAGTACCGGTGTCTGGAGGGTTTAAGTGGAGAGGAGGACGACG
CTGTCGGAAAAGGGGAAAAGCGCGGAAACGTGCGGGAAGCCGGGGAGCAA
CAAAAGCAGAAGATTTCGCTGAATCGGCTTGGAAAGTGGACGTCCGTGGG
CGGCGGAGGCGGGTGTGGCACTGAACGAGGGGGAACTGAGCGGCTGCATG
TCGCGGGGCTGGGCAGAGAGGAAAGTCAGCAGGGACAGAATCCAAGGCGT
GCCTACGCATCGCAATCGGACGGTGGGAGCCATCCAAGTAATGCCACTGG
AGACGTGGGGATCTTGTGCGGGCAAGCATTGGACGCTGGGACGCCGGGGA
AGAAGGAGCTGGACAAGGGCGCTCGGGCGCTGGCGGCCACCTTGCAGTGG
TGCCTGAGGGAGGGGCAGGCCTTGCGCATGACGGGCGGGGGCGGCGGAGG
AGGTGGCACTGCGGAATGCTGCGAGCCGATGCAGCTGGGCTATGGCTTCT
CTTTTGAGGTGGTGCTGGAAAGGGGGGGGGGACGGGCGCGCAGGGGGGAG
GGGCGCGAACCTAGGTGGGGAGGACGGGGGCTGGAGGGTAGGGGAGGGTC
GGCCTCTGAGCGCGGATAGCCTTAGCAGGGTGTCCGAGGCGGGGCGATGG
CAGGCCTTGAGGACGGGGAAGCAAGTGCAAGGCTTGAGCTCTCGGGCGAG
GAGCGGAACCGCGCCCGATGCCGCTTCCCATTCAGAAGCAGCCTTCCACA
CCCAAGATAGTGCGAGGATCAAGGGCGAGACAGCAGCCGTGGACGCCCAG
CTCCGGTACGACCCTCTATTCCGCTACCTGTACGAGGCTTCTCAGGCCTG
TCCTCGAGGCTTCCAGGACTGGTGTTGCCTGTGTACCAAGGCCAAGGCTG
CGCTTCGGAAGGACGAGCACAGAATCGAAAGGAGAGAATTCGACGAGAGG
AGTACCGCCTGGTTTACCCGCGTTACGTGCTGTCGGAAAGAGGAAACAGC
CGCCAGTGCGGGCGCTGCATCAGCCGGTGGGTCCAGGGTCGTTCCCCCGC
TGGGGCGCGGCTCCCATCCGTGGAGCCCTCAGGATGACCTTCCCGCAGAC
GGCCCCCCCGAGGCCTCGCTTGGTGCTAGAGGTCAAAGCAGCGAGGTAAG
GGCAGGCTGCGCTCTTGCGGTTGGGCGAGAAGGCCTTGTCGTAGTGCCTG
CAGCAGTTGCTCACCTGGACTCCTCTCCTCCAAGCGCCCCCTCGACGGCC
TTGGGCGTGGTCGCTGCCGTTGCCTCTGTCGGGTCCCTGAATCGGCACGA
GGCGGAGGTTCAACCCTCCTATCACGCGCAGCCAGTCTCGTGGCCGCTTG
ATTTCCGAAGCGACAGCTTCTCATCACCGGGTCGTCCCTCTTCTGCGTCC
TCCTCAGCTCCCTCTTCAGCCCACAATGCGCTCGTACGATGCTCACGGAC
TGATGTTCAGGCATGTCCGTGGACGTTCTGCTTTCTCGTCGTGAGCCTTC
TAGCCGCCGGGCTCGGACTCTTTCTTCGACGTGCTAGCTCTCGGCGGGTG
GAGAAGACAGGTTGCAAGGTGTGGACGCTTTGCCGAAGAATTGAGAGCAC
AAAGGAGGAAGTGGTGGAGGAGGAAGGGCGCGCGTTGTTGCCGCTGTCGT
CCACAGGGCCGAGGGGCTTACAAGAGCCGCGCTATGGTGCCACGGATGTT
TCACAGTGAGAGCCGTATAAAGAAGTATGTACTGAAAACAGA

Coding sequence (CDS) from alignment at CM002465.1:431157..433898-

>rna5210 ID=rna5210|Name=rna5210|organism=Nannochloropsis gaditana|type=CDS|length=1269bp|location=Sequence derived from alignment at CM002465.1:431157..433898- (Nannochloropsis gaditana)
ATGGACCCCCCCAGCTCCTCCACCATCGATGCCCTGAAAGCCCTGAATTG
TAGCGCGCAGCACTTCGTTGCGGTTGTGGCTTCATGGCTGGTTACTGCCT
CGACGCCATCCACATCGCAAAACACCATTGAATTCCCGACATATATGTCA
TTCAACTACACCATGCACCACTCTCCTCCCTCACTCGGCGAAAAGGCCGC
AGCTGCTGAGGCTTTAGCCGAAAGTCAAACACAGTGTGGCAACGTCCCGC
GTCTGGCGTGCGGGGCCCTGGTGGAGGACGAGGCTACAATTGGAGCGAAG
CGCCTGGGCGAGTACTTGGTTCGACTGCTGCGGGGGGAGTCCCTGTCTGC
CCCTTCGACCTTACTGCAAGAGACGTCCGCGTTCGGGTGGCTCCCGGCCC
ACGCTTTTGTCCAACGTCACCTCGGTGAGGCTGACCATGTGCACTCGTGG
CCAAAGATGGGTAAAGAGCAATTAAAGCCGAGAAAAGCGTTCCGCATTGA
AGGGGGGGGGGGAAGTGGAGCGGGGTTCCAGGTGTACTGCGGGCGAAGTT
TGCTCGTATCGGCAGGCGGAGGTGGTGGAGGGGGCGTCGAGGGGAGGCTG
TTGTTGAGGAAGAAGGGGAGGTCGTATTCCATGGGGGGGGGCGGGGGGGG
CGGCGCTCAGTACCGGTGTCTGGAGGGTTTAAGTGGAGAGGAGGACGACG
CTGTCGGAAAAGGGGAAAAGCGCGGAAACGTGCGGGAAGCCGGGGAGCAA
CAAAAGCAGAAGATTTCGCTGAATCGGCTTGGAAAGTGGACGTCCGTGGG
CGGCGGAGGCGGGTGTGGCACTGAACGAGGGGGAACTGAGCGGCTGCATG
TCGCGGGGCTGGGCAGAGAGGAAAGTCAGCAGGGACAGAATCCAAGGCGT
GCCTACGCATCGCAATCGGACGGTGGGAGCCATCCAAGTAATGCCACTGG
AGACGTGGGGATCTTGTGCGGGCAAGCATTGGACGCTGGGACGCCGGGGA
AGAAGGAGCTGGACAAGGGCGCTCGGGCGCTGGCGGCCACCTTGCAGTGG
TGCCTGAGGGAGGGGCAGGCCTTGCGCATGACGGGCGGGGGCGGCGGAGG
AGGTGGCACTGCGGAATGCTGCGAGCCGATGCAGCTGGGCTATGGCTTCT
CTTTTGAGGTGGTGCTGGAAAGGGGGGGGGGACGGGCGCGCAGGGGGGAG
GGGCGCGAACCTAGGTGGGGAGGACGGGGGCTGGAGGGTAGGGGAGGGTC
GGCCTCTGAGCGCGGATAG

Synonyms

Publications