rna5208, rna5208 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5208
Unique Name	rna5208
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2935
Alignment location	CM002465.1:426289..427900 -

Link to JBrowse

Properties


Property Name	Value
Product	cobalamin synthase
Orig transcript id	gnl\|cribi\|Naga_100207g7.9441.mrna
Orig protein id	gnl\|cribi\|Naga_100207g7.9441
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:426289..427900 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100207g7	gene5028	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25475.1	cds5196	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5208	rna5208-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:426289..427900-
coding sequence from alignment at CM002465.1:426289..427900-

mRNA sequence

>rna5208 ID=rna5208|Name=rna5208|organism=Nannochloropsis gaditana|type=mRNA|length=2935bp
CGCTGCGCAAGTTGTCCAGCAATGACCGTTGTCCCCGCCGGTACCGCCAC
GACGCGACGCGCGGAGGCAAGTAGGCGAGGGCGACGCGCTGTAAAAGTTT
TATCTTCAGCTTCCGACTCAGCGTGAGGCTTCCCAGGTCACTGGATGGGC
CCTGCGCAAGGCAGCGCAAGAGGGAGGGCAGAAATGCGAGCAGGTTTTGT
CGGTGACCAGCTTTGAGCAGCACTGACAGAGTTTGCAGCACCCCCAGGGG
TAAAAATGCCTCCCCTGGGGCGGCCAGGGTAGCCTCGAGTCCTCCTCCTC
CACTCCCTCTCTGCCCCCTTTCCTCCATTTCCGCACCTGCCGAAGGATCG
CGCACCCCCAGGACGCCTTCAGCCCACTTCAGAAAGACGGCGAGCTGCCC
GCATTCCATGTCCGGGCGCTTCAAAAGACTCGCGAGGCAGACAGCGGCGG
CTTCCCGCGTGGGCCCTGGATCCCGCAAGTACTCGGTCGCCTGGTCACAG
ATAGCACCCACCAGCGTCACGCTTGACTGTGCCCGCCCAGACTGTCCTGC
GTCTACGCCTGAATCGATGGAGCATATGTTGAAGGGCACAAGGACGAGCA
TGCTAAGCCAGAGTAGGAGTATGTATCGGGTCTGCCATAGTCCGCAATCC
TGCCGGTCTTGTGATTGCAAGGCGTGAAGGACCGGCTCCAGGTCGGTTGC
TTCATGAGGAAAGAAGGTAATCACGGTCTTGCGACCGCGTAGCCGGCATA
GCACGTATACAAAGGCGAAAAGCGCATCTAGTTGGGCGTTGCGAAATATT
TGGAAAGGGAATGAGGGAGCCGGCGCCGTTACCTGTTCAGCTAGCCGTTT
ATTTTGCCAGCTCAAAATAATAAGTCGGGCTCGCCCCATGGTTAGGGCTA
ACATCTTTTCCATGGCAGGATCTAAGAGAGTACTTTGCTCTAAATATTTG
TCCAGTACTTTTTGTAGCCATTCGAGCTCCCCCGTAAGAGAGGCGGGGGG
CTCTGGCCCTGCTAGAAGCGTAAGCCGAGCTAGCACTTCATCTCGCTCCA
CAAAATAGGTCGACTCGCAAGAAGTCTCTTCCTCATCCCTGTCGTGGCCA
TTGTTGGAGTCGTCTGGGCAGCTTTCCATCGATAGCTGTGGTTGTGGGGG
AGCTAGGGGTGAAGAAAAGGAGGAAAGGTTCGCCAAAACTGGCCGAGGCC
TTTTTTGATACTGCCGACGTTGGCCGGGCTTTTTCGCAGCCCTGGCGCAT
CGTTATACCTAAGTAGAAGGTGTTGTTTGTTATCAACGGGTTATAAACTA
AGAACCATGTCTTTAAATAGCACCATGCCATTGTGCAAGTTGCCGCTGGA
TCCACTCAGGATCTACTTGAGCAACAAGAACAGGAGAAGCACGAGGAACC
CTGCAGTCGGACCCAGCGTGCCTCCGCAGTGACAAAACCAAGCACTAGGG
ATTTCAGCCGAACAGAAGTGAATATTCTTTACATGCAGAACTTTTAACTC
CTCATTCGCTCATGTTCATGGTTCCCAATCTTGTCTATTGTGCTCAAAAG
GCTGTGAATCTCAGATGAGCCAAAGCGAAACCGGCGCCGTCCACCTACAT
AATCGTTCAACTACATTATCATCACCATGGCTTTTAGAAGCCCGCCAAGA
GATTGATGCCAAGGCAAAGCCACCGGGGTCTTTAGGTTTACTGGAGGACT
GGGCAGTTAAAATCTCAGACATCCAACAAACTCTGCGCCCACATATTTCT
GCTGCTCGCCTAGTACTCTTCGCAGGTGACCACGGCATTACGCTATCTCA
TCCGGGCGTGTCAGCGTATCCCCGGGAAGTGACAAGACCTATATTTCAAG
ACATCGCTTCAGGGACTGGAGCAAGTGCAATCCTAAGCCGAAGCAACGGC
TGCGAACTGAACATCGTTGACGTAGGCATTGATACATGTAAGGATGAAAG
ATATCCATATGAGAATGGCGGTGCTTCGTTCACGATTGCCGGCGGGGCGC
ATCACATCACTGTGACCCAAGCGAAGGTGAGTAGGGGCTCGAGAGACATG
ACGCAGGGCCCAGCGCTAACCCCCGAGGAACGGGCTGCAGCCCAAAACGT
GGGAGCCGAGGCTGTGCGAAGATACCTTGCTGAACATGCGAAGGCCCACC
CTGCCCCAGGTGCCATCAGTTGCAACGAGGACACAACGGGAGGGGCGAGT
TCTCATTCGAGGCTTGCGCTCTGCATTGGTGAACTTGGCATTGGAAATAC
CACCGCTGCCGCTGCACTCGTAGCCGCATTAACAGGCTCGCCAGCAGCGC
TGGTCACGGGCAAAGGAACGGGTCTAGATCCGGACGGGGTGAACCTGAAG
GCTCAAGCTATTGAAAAAGCTCTTGCTGCCAACAGTGAGCTGGTCCGGGA
GAGGGATCCCGCCCACGTCCTCGAAGCTGTTGGGGGTCTCGAATTGGCCG
CCATGGTAGGCGCTTACTTGGAAGCGGGTCGATGGCGCATGCCTATCTTG
GTCGATGGCTTCGTGTCGGGGGCAGCGGCTCTGGTCGCGCTCCATTTTCA
CCCTCCTCTTGCAGCATTCTTGTTCTGGAGCCACCAGTCAGACGAGAAAG
GGGCCTCAGTGTTGCTGCAGGCCGTGGCAACCAAGGCACAGGAAATCGAT
GTACCCTATTTCCCGCCGCCTCTCATGATGAGTCTCCGACTTGGGGAGGG
AACTGGGGCTCTTCTGGCTTTGCCCCTCCTGAGATCCGCCTGTGCGATCA
TGCGGGAGATGGTAACCATGGACTCCATGGTCGAAGGAAAGAAAGAGTGT
CGCGGCATTGACAGCGAAACAGGAAGTAATCAGGACAAGAAGGAACTCGG
GCCGAAGTAGTCGATAAAAATGGGAAGGGGGACTGCAAGATTCAAGTTTG
AAAGCTATGAAGTACTTTTTACTCCCTCCAATTTA

protein sequence of rna5208

>rna5208-protein ID=rna5208-protein|Name=rna5208|organism=Nannochloropsis gaditana|type=polypeptide|length=380bp
MAPNRRGGPLTRSSSGNTPTKRTKATPKASETSSAVHDNDLSVISKKEIE
DRGAGTDEDTDTYVDLPFLRGEKRVFFTAVIFLTRLNVPRWAEADHHPAY
LMRSMMHFPFLGLCVGIWAAVWLEAAAVLWTPFVAAAASTLAGVWITGAF
HEDGLADSLDAFGGGWGRLQILRIMTDTRVGTYALVGMILVMGMKLKSLE
VLQSLSQSDITISTFLPSLSLSPASVALLVAHTVSRWTVLPLIYSCHYIQ
DEQSAKRGLYNWFADSQRLLTLPRLCLGTLVTILVPVLLLPVEQAMSVFL
VVVLVTLGASYYGNLIIGGVIGDFLGATIQVCELCVYLLLSADLKQTQTN
PFPLVMLAATAVLPILTSRPLIDFGFRAEC

mRNA from alignment at CM002465.1:426289..427900-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5208 ID=rna5208|Name=rna5208|organism=Nannochloropsis gaditana|type=mRNA|length=1612bp|location=Sequence derived from alignment at CM002465.1:426289..427900- (Nannochloropsis gaditana)
TTTAAGTCCGTTTCCTATCGACAAAGAATAGGAGTTTTCTCCCAGCATCG
GAGAGGAAATTGCCTTCATACCGGGCTCCATATCATTTCGTGGATACATT
TCTACATTTTTCCTCTCTTTAAAGAAGCTCGATGGCGCCAAATCGTCGTG
GCGGGCCCTTAACTCGCAGCAGCAGTGGGAATACTCCGACAAAAAGGACT
AAAGCAACGCCCAAAGCGTCCGAGACATCCTCAGCTGTTCATGACAATGA
TTTGTCGGTCATTTCCAAGAAAGAGATTGAAGACCGTGGAGCGGGCACGG
ACGAAGACACAGACACTTATGTTGACCTGCCGTTCCTGCGCGGAGAGAAG
CGTGTTTTTTTTACTGCTGTCATTTTCCTAACGCGTTTAAACGTCCCTCG
TTGGGCAGAGGCCGACCATCACCCCGCTTATCTAATGCGGTCGATGATGC
ATTTCCCCTTCTTAGGGCTCTGTGTAGGAATTTGGGCGGCTGTCTGGCTC
GAGGCCGCGGCGGTGCTCTGGACCCCTTTTGTCGCTGCAGCGGCTTCGAC
ATTAGCTGGTGTATGGATAACGGGAGCCTTTCATGAAGACGGACTCGCAG
ATTCTTTGGATGCCTTTGGGGGAGGGTGGGGGCGCTTGCAAATCTTGCGC
ATTATGACAGACACTCGCGTGGGAACCTATGCATTGGTGGGCATGATTCT
CGTCATGGGGATGAAACTAAAGAGCTTGGAGGTTTTGCAATCCTTGTCGC
AGTCGGACATAACGATAAGCACTTTTTTGCCCTCCTTATCCCTTTCTCCC
GCCAGCGTGGCCCTGTTAGTGGCCCATACAGTGTCTCGATGGACTGTCCT
TCCTCTAATATACTCCTGCCACTACATTCAAGATGAGCAAAGTGCCAAGC
GAGGGCTTTACAATTGGTTTGCGGACTCTCAGAGGCTCCTGACTCTCCCT
CGTCTCTGCTTGGGCACACTGGTCACGATCCTTGTTCCCGTGTTGCTCCT
CCCTGTTGAGCAAGCCATGAGTGTCTTCCTGGTCGTGGTTCTGGTCACTC
TTGGGGCGTCGTATTACGGAAATTTGATCATTGGGGGGGTCATTGGCGAT
TTTTTAGGCGCAACGATTCAGGTCTGCGAGCTGTGCGTATATCTGCTCTT
GAGCGCTGATCTCAAGCAGACGCAGACAAACCCCTTCCCTCTCGTCATGC
TGGCGGCTACAGCCGTTTTGCCTATTTTGACATCTCGGCCTTTGATTGAC
TTTGGCTTTCGCGCCGAGTGTTAGCAAAAAAAGTTATTTACAAAAGTATA
AGCATGTCTGTCACACTGTTGGAAAAAAATTGGGCAAATAAATTGGAGGG
AGTAAAAAGTACTTCATAGCTTTCAAACTTGAATCTTGCAGTCCCCCTTC
CCATTTTTATCGACTACTTCGGCCCGAGTTCCTTCTTGTCCTGATTACTT
CCTGTTTCGCTGTCAATGCCGCGACACTCTTTCTTTCCTTCGACCATGGA
GTCCATGGTTACCATCTCCCGCATGATCGCACAGGCGGATCTCAGGAGGG
GCAAAGCCAGAAGAGCCCCAGTTCCCTCCCCAAGTCGGAGACTCATCATG
AGAGGCGGCGGG

Coding sequence (CDS) from alignment at CM002465.1:426289..427900-

>rna5208 ID=rna5208|Name=rna5208|organism=Nannochloropsis gaditana|type=CDS|length=1143bp|location=Sequence derived from alignment at CM002465.1:426289..427900- (Nannochloropsis gaditana)
ATGGCGCCAAATCGTCGTGGCGGGCCCTTAACTCGCAGCAGCAGTGGGAA
TACTCCGACAAAAAGGACTAAAGCAACGCCCAAAGCGTCCGAGACATCCT
CAGCTGTTCATGACAATGATTTGTCGGTCATTTCCAAGAAAGAGATTGAA
GACCGTGGAGCGGGCACGGACGAAGACACAGACACTTATGTTGACCTGCC
GTTCCTGCGCGGAGAGAAGCGTGTTTTTTTTACTGCTGTCATTTTCCTAA
CGCGTTTAAACGTCCCTCGTTGGGCAGAGGCCGACCATCACCCCGCTTAT
CTAATGCGGTCGATGATGCATTTCCCCTTCTTAGGGCTCTGTGTAGGAAT
TTGGGCGGCTGTCTGGCTCGAGGCCGCGGCGGTGCTCTGGACCCCTTTTG
TCGCTGCAGCGGCTTCGACATTAGCTGGTGTATGGATAACGGGAGCCTTT
CATGAAGACGGACTCGCAGATTCTTTGGATGCCTTTGGGGGAGGGTGGGG
GCGCTTGCAAATCTTGCGCATTATGACAGACACTCGCGTGGGAACCTATG
CATTGGTGGGCATGATTCTCGTCATGGGGATGAAACTAAAGAGCTTGGAG
GTTTTGCAATCCTTGTCGCAGTCGGACATAACGATAAGCACTTTTTTGCC
CTCCTTATCCCTTTCTCCCGCCAGCGTGGCCCTGTTAGTGGCCCATACAG
TGTCTCGATGGACTGTCCTTCCTCTAATATACTCCTGCCACTACATTCAA
GATGAGCAAAGTGCCAAGCGAGGGCTTTACAATTGGTTTGCGGACTCTCA
GAGGCTCCTGACTCTCCCTCGTCTCTGCTTGGGCACACTGGTCACGATCC
TTGTTCCCGTGTTGCTCCTCCCTGTTGAGCAAGCCATGAGTGTCTTCCTG
GTCGTGGTTCTGGTCACTCTTGGGGCGTCGTATTACGGAAATTTGATCAT
TGGGGGGGTCATTGGCGATTTTTTAGGCGCAACGATTCAGGTCTGCGAGC
TGTGCGTATATCTGCTCTTGAGCGCTGATCTCAAGCAGACGCAGACAAAC
CCCTTCCCTCTCGTCATGCTGGCGGCTACAGCCGTTTTGCCTATTTTGAC
ATCTCGGCCTTTGATTGACTTTGGCTTTCGCGCCGAGTGTTAG

Synonyms

Publications