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Properties
| Property Name | Value |
|---|
| Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
| Orig transcript id | gnl|cribi|Naga_100207g8.9437.mrna |
| Orig protein id | gnl|cribi|Naga_100207g8.9437 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:423545..426562 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5207 ID=rna5207|Name=rna5207|organism=Nannochloropsis gaditana|type=mRNA|length=4117bp
TTCACCCCTAGCTCCCCCACAACCACAGCTATCGATGGAAAGCTGCCCAG
ACGACTCCAACAATGGCCACGACAGGGATGAGGAAGAGACTTCTTGCGAG
TCGACCTATTTTGTGGAGCGAGATGAAGTGCTAGCTCGGCTTACGCTTCT
AGCAGGGCCAGAGCCCCCCGCCTCTCTTACGGGGGAGCTCGAATGGCTAC
AAAAAGTACTGGACAAATATTTAGAGCAAAGTACTCTCTTAGATCCTGCC
ATGGAAAAGATGTTAGCCCTAACCATGGGGCGAGCCCGACTTATTATTTT
GAGCTGGCAAAATAAACGGCTAGCTGAACAGGTAACGGCGCCGGCTCCCT
CATTCCCTTTCCAAATATTTCGCAACGCCCAACTAGATGCGCTTTTCGCC
TTTGTATACGTGCTATGCCGGCTACGCGGTCGCAAGACCGTGATTACCTT
CTTTCCTCATGAAGCAACCGACCTGGAGCCGGTCCTTCACGCCTTGCAAT
CACAAGACCGGCAGGATTGCGGACTATGGCAGACCCGATACATACTCCTA
CTCTGGCTTAGCATGCTCGTCCTTGTGCCCTTCAACATATGCTCCATCGA
TTCAGGCGTAGACGCAGGACAGTCTGGGCGGGCACAGTCAAGCGTGACGC
TGGTGGGTGCTATCTGTGACCAGGCGACCGAGTACTTGCGGGATCCAGGG
CCCACGCGGGAAGCCGCCGCTGTCTGCCTCGCGAGTCTTTTGAAGCGCCC
GGACATGGAATGCGGGCAGCTCGCCGTCTTTCTGAAGTGGGCTGAAGGCG
TCCTGGGGGTGCGCGATCCTTCGGCAGGTGCGGAAATGGAGGAAAGGGGG
CAGAGAGGGAGTGGAGGAGGAGGACTCGAGGCTACCCTGGCCGCCCCAGG
GGAGGCATTTTTACCCCTGGGGGTGCTGCAAACTCTGTCAGTGCTGCTCA
AAGCTGGTCACCGACAAAACCTGCTCGCATTTCTGCCCTCCCTCTTGCGC
TGCCTTGCGCAGGGCCCATCCAGTGACCTGGGAAGCCTCACGCTGAGTCG
GAAGCTGAAGATAAAACTTTTACAGCGCGTCGCCCTCGCCTACTTGCCTC
CGCGCGTCGCGTCGTGGCGGTACCGGCGGGGACAACGGTCATTGCTGGAC
AACTTGCGCAGCGTCCAGGAGGCCCGAGGGGGGCGACGATTGGGACCTGA
GAGAGGGACCGAGGAGGGGGGCGAGGAAGAGGAGGTTGAAGAGGGGAAGG
ACGAGGAGGACGTGCCGGAAGCGTTGGAGGATATCGTGGAGGAACTTCTT
CTAGGCCTCCGAGACCGTGACACCGTGGTTCGCTGGTCCGCCGCAAAGGG
TTTAGGTCGGATCGCCAGTCGGCTGCCCGAGTCCTACGCGGACGAGGTGG
TGGCCTCTGTCCTCTCCTCTTTCACGGAGAGCGCCCCAGACAGCGCCTGG
CACGGCGGCTGCCTGGCTCTCGCCGAGTTGGCCCGACGCGGGTCGCTCTT
GCCGGGAAGACTGGGCCTGGCGGTGCCGGTGGTGACCCGAGCCTTGCGGT
ACGACGTCCGCCGGGGGCAGGCCAGCGTCGGGGCCCACGTGCGGGACGCG
GCCTGCTACGTCTGCTGGGCCTTCGCGCGTGCATACTCACCCCAAGCAAT
GCGCCCCTATGTGCAGAGACTGGCAACTGGCATGCTTCTGACCGCGCTCT
TCGACAGAGAGATCAACTGCCGAAGGGCGGCAGCGGCCGCTTTCCAGGAA
AACGTGGGCCGTCAGGGGGCCCGGAATTTTGCCCACGGGATCGCCATTCT
CGCGGCGGCCGACTACTTCACCCTGGGGAACCGACAGGCTGCCTACCTGT
CCATCGGTCCCGCGGTGGCTCACTTTCCGCCTTACACTCGGTCAATCATC
GAGCACTTGGCTCTGGTCAAGCTCAGGCACCCAGACCCGTCCATACGCCT
GTTAGGCAGCCAGGCCCTCCATCGCATGGCCGGCCTGGCCCCTTCCTTCC
TGTTGGACGATATCCTCCCCACCCTCGTCGCGCAGGTGGACGCACTGGAC
CTCTGCTGTCGCCATGGAGCCTTGCTGGGCGTCGCCGAGCTCCTGCTGGG
CTTGAGCCAGCTCCCCTCTTTCCTGCCCGGGGAGACCCTCAAGGCTGTAG
TGGCCATCGTGCCTCGAATCGAGCAGGCCCGCCTTTACCGAGGCCGTGGC
GGAGAACTCGTGCGCGAGGCTGCTTGTCGTTTGATCGAGTGCCTGGCCCT
GGCTCTCGTGCCTCTGTCCGTCAAAACGCAACTCCGCTTGCTCGACTCCC
TGGACGAGAATTTGAGGCACCCGGCGGACGCGGTCCGGGCGCACGCCGTC
GCAGCCATCCGGGCCTTTACCCATGCCTACTTCGGAAGGGGCATGGACGA
GCCCTCAGCACGTCTGCAGGCGCGGGTTGTGGACAAATACCGGCGTCTGG
TGGAGACGGACGAGAACGTCGCTGTCACCCGAGGCTTTCTTCGGGCCTTG
GGCGCCCTCCCCGCGCGGCTCCTTTTTCCGTCCTTTCCAGCGCTTTTGGA
CACCATAGAGACCCAGTTGGCGCCTAATCGGAGGGTAGGGGATGAGCCAG
ATGCGGAAACCCGCCGGAACGGCATACTGGCCTTGGGAGAGATGGCAGAG
ACTCTGGGTGTCGAGGTGTCGGGGGGGGGGAGGAGGGGGGCTAGGGGAAT
GAACAGTGCGCAGGTGCATCGGTTGATTAGTCTCTTGCTGAAGGGCACCG
GTGACTATGCGATGGACAAACGGGGGGACGTCGGGTCGTGGGTGCGCATG
GCGGCTTTGCAGGGCCTGGAGAAGACCGTGACGCTGGCAGGCGCCTATCT
CTTCCCGTATGGACCAGGGTGCGGCCTGTTCCCGAGGCAGTCCTGCCAGC
CTTTGTCGGTATCGGATGGGGTGAAGGATGCCAGGACGGACGACGCAGCC
GCCACTGCAGTGGGGACGGCATCGATAGGGGACGCGGGGGTGGGACGATT
TGCTTCCTCGACGTCTTTGATAAGTCCTGAGCTCATGACCGCCATCGTCT
CGGCGGTTCTAAAACAGCTCTGTGAGAAGCTGGACGCGGTCCGAGAATGT
GCCGGCCGTGTCCTCTCCACCATTCTGCCCCTCGCACGGGACGCAGAGGC
CTACTCCACGCTTCTGGCGGTGTTTTCGAGCGAGGCGGAAGGAGGCCTCT
CCCTCAAAGGAGGGGACTCCGCAGCGGTCTATCCCCGGGCCGTCAGGTTG
CTGGGGGTTCGGGCTTACCATGAGGCGATCGTCGCCGGCCTCGTGATCAG
CGTGGGGGGGCTCACAGAGAGTGTGGTGAAAGCCAGTGTTGCTGCAGTGG
TGGAGTGGGCGCGTCAGCAGCGTCTCTCAAAGCGCGAGAGGCAGGAGGAA
TGCCGGTCCAACGCCTGCGAAGACGGGCACAAGATGCCCCCTCGTCTTCA
GGAATTCTTCGAAAGCCTGCTAGGTCTGTTTGACGCGCACAGCGGAAACG
ACCGCGTCATCATGCCTCTGCTCCGCTCCCTCGATTTGTTTTATCAAAAA
GGAGTCCTGGTGTCTCGCGCCCAGGCGGCAGGATGGGAGGTGGGCAGCGA
GGACGGGAAGCACGCAGGTAAGGCGAGCCTTTCCTGGAGACTGGCTGACC
GGCTGCTGCGCGAGGTCACAGGCTGCCGCAACGTCACAAAGCTTCTCGCC
TGTCTCAGAGTCGCCCTCCACCTCCTCTCTCCCCTGACCTTCCGAGCCGG
CCAAGAAGAGGAAGAAGCCGGCGCTGCAGCCCTGCGTCTCATCCTCCTCC
TCCTAGGACATCGCTTCCCCCGTGTGCGCAAGCTTGCCGCACAAGAATTG
TATACCGCGCTGCTTCTTCACGACCATCTCTTGGCAGGTGGCGGGGACGC
GCAAGAGCGGGTGCTGGAGGCTTTGCTGGGAGCCGCGTGGGAGGAGGAGG
ACCTGCAGGCCCTGTGCGGGGTGCGGGACGAGATATGTGCGGTGTTGGTG
CTGGCCCCACTGGGGGCGGGAGGCACTGTGGTGTCGAGGCGCGGGTTAGG
GGGGAGGAAGGGGGCCGGGGAGGAGCTGGCATCGTACGCGGCCTTGGTGA
AGGAGATGGGCTACTAG back to topprotein sequence of rna5207 >rna5207-protein ID=rna5207-protein|Name=rna5207|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MSQSETGAVHLHNRSTTLSSPWLLEARQEIDAKAKPPGSLGLLEDWAVKI
SDIQQTLRPHISAARLVLFAGDHGITLSHPGVSAYPREVTRPIFQDIASG
TGASAILSRSNGCELNIVDVGIDTCKDERYPYENGGASFTIAGGAHHITV
TQAKVSRGSRDMTQGPALTPEERAAAQNVGAEAVRRYLAEHAKAHPAPGA
ISCNEDTTGGASSHSRLALCIGELGIGNTTAAAALVAALTGSPAALVTGK
GTGLDPDGVNLKAQAIEKALAANSELVRERDPAHVLEAVGGLELAAMVGA
YLEAGRWRMPILVDGFVSGAAALVALHFHPPLAAFLFWSHQSDEKGASVL
LQAVATKAQEIDVPYFPPPLMMSLRLGEGTGALLALPLLRSACAIMREMV
TMDSMVEGKKECRGIDSETGSNQDKKELGPK back to topmRNA from alignment at CM002465.1:423545..426562+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5207 ID=rna5207|Name=rna5207|organism=Nannochloropsis gaditana|type=mRNA|length=3018bp|location=Sequence derived from alignment at CM002465.1:423545..426562+ (Nannochloropsis gaditana)
CGCTGCGCAAGTTGTCCAGCAATGACCGTTGTCCCCGCCGGTACCGCCAC
GACGCGACGCGCGGAGGCAAGTAGGCGAGGGCGACGCGCTGTAAAAGTTT
TATCTTCAGCTTCCGACTCAGCGTGAGGCTTCCCAGGTCACTGGATGGGC
CCTGCGCAAGGCAgcgcaagagggagggcagaaatGCGAGCAGGTTTTGT
CGGTGACCAGCTTTGAGCAGCACTGACAGAGTTTGCAGCACCCCCAGGGG
TAAAAATGCCTCCCCTGGGGCGGCCAGGGTAGCCtcgagtcctcctcctc
cactccctctctgccccctttcctccatttccgcaCCTGCCGAAGGATCG
CGCACCCCCAGGACGCCTTCAGCCCACTTCAGAAAGACGGCGAGCTGCCC
GCATTCCATGTCCGGGCGCTTCAAAAGACTCGCGAGGCAGACAGCGGCGG
CTTCCCGCGTGGGCCCTGGATCCCGCAAGTACTCGGTCGCCTGGTCACAG
ATAGCACCCACCAGCGTCACGCTTGACTGTGCCCGCCCAGACTGTCCTGC
GTCTACGCCTGAATCGATGGAGCATATGTTGAAGGGCACAAGGACGAGCA
TGCTAAGCCAGAGTAGGAGTATGTATCGGGTCTGCCATAGTCCGCAATCC
TGCCGGTCTTGTGATTGCAAGGCGTGAAGGACCGGCTCCAGGTCGGTTGC
TTCATGAGGAAAGAAGGTAATCACGGTCTTGCGACCGCGTAGCCGGCATA
GCACGTATACAAAGGCGAAAAGCGCATCTAGTTGGGCGTTGCGAAATATT
TggaaagggaatgagggagcCGGCGCCGTTACCTGTTCAGCTAGCCGTTT
ATTTTGCCAGCTCAAAATAATAAGTCGGGCTCGCCCCATGGTTAGGGCTA
ACATCTTTTCCATGGCAGGATCTAAGAGAGTACTTTGCTCTAAATATTTG
TCCAGTACTTTTTGTAGCCATTCGAGCTCCCCCGtaagagaggcgggggg
ctcTGGCCCTGCTAGAAGCGTAAGCCGAGCTAGCACTTCATCTCGCTCCA
CAAAATAGGTCGACTCGCAAGAAGTCTCTTCCTCATCCCTGTCGTGGCCA
TTGTTGGAGTCGTCTGGGCAGCTTTCCATCGATAGCTGTGGTTGTGGGGG
AGCTAGGggtgaagaaaaggaggaaaggttCGCCAAAACTGGCCGAGGCC
TTTTTTGATACTGCCGACGTTGGCCGGGCTTTTTCGCAGCCCTGGCGCAT
CGTTATACCTAAGTAGAAGGTGTTGTTTGTTATCAACGGGTTATAAACTA
AGAACCATGTCTTTAAATAGCACCATGCCATTGTGCAAGTTGCCGCTGGA
TCCACTCAGGATCTACTTGAGCAACAAGAACAGGAGAAGCACGAGGAACC
CTGCAGTCGGACCCAGCGTGCCTCCGCAGTGACAAAACCAAGCACTAGGG
ATTTCAGCCGAACAGAAGTGAATATTCTTTACATGCAGAACTTTTAACTC
CTCATTCGCTCATGTTCATGGTTCCCAATCTTGTCTATTGTGCTCAAAAG
GCTGTGAATCTCAGATGAGCCAAAGCGAAACCGGCGCCGTCCACCTACAT
AATCGTTCAACTACATTATCATCACCATGGCTTTTAGAAGCCCGCCAAGA
GATTGATGCCAAGGCAAAGCCACCGGGGTCTTTAGGTTTACTGGAGGACT
GGGCAGTTAAAATCTCAGACATCCAACAAACTCTGCGCCCACATATTTCT
GCTGCTCGCCTAGTACTCTTCGCAGGTGATGTATTGGCACAGAGAAAAAA
TCAAATTATGTGAGGGTAAGTATCAGGTTTCATTATAATCCTATTTCTCA
AAGAACAGGTGACCACGGCATTACGCTATCTCATCCGGGCGTGTCAGCGT
ATCCCCGGGAAGTGACAAGACCTATATTTCAAGACATCGCTTCAGGGACT
GGAGCAAGTGCAATCCTAAGCCGAAGCAACGGCTGCGAACTGAACATCGT
TGACGTAGGCATTGATACATGTAAGGATGAAAGATATCCATATGAGAATG
GCGGTGCTTCGTTCACGATTGCCGGCGGGGCGCATCACATCACTGTGACC
CAAGCGAAGGTGAGTAGGGGCTCGAGAGACATGACGCAGGGCCCAGCGCT
AACCCCCGAGGAACGGGCTGCAGCCCAAAACGTGGGAGCCGAGGCTGTGC
GAAGATACCTTGCTGAACATGCGAAGGCCCACCCTGCCCCAGGTGCCATC
AGTTGCAACGAGGACACAACGGGAGGGGCGAGTTCTCATTCGAGGCTTGC
GCTCTGCATTGGTGAACTTGGCATTGGAAATACCACCGCTGCCGCTGCAC
TCGTAGCCGCATTAACAGGCTCGCCAGCAGCGCTGGTCACGGGCAAAGGA
ACGGGTCTAGATCCGGACGGGGTGAACCTGAAGGCTCAAGCTATTGAAAA
AGCTCTTGCTGCCAACAGTGAGCTGGTCCGGGAGAGGGAtcccgcccacg
tcctcgaAGCTGTTGGGGGTCTCGAATTGGCCGCCATGGTAGGCGCTTAC
TTGGAAGCGGGTCGATGGCGCATGCCTATCTTGGTCGATGGCTTCGTGTC
GGGGGCAGCGGCTCTGGTCGCGCTCCAttttcaccctcctcttgcagCAT
TCTTGTTCTGGAGCCACCAGTCAGACGAGAAAGGGGCCTCAGTGTTGCTG
CAGGCCGTGGCAACCAAGGCACAGGAAATCGATGTACCCTATTTCCCGCC
GCCTCTCATGATGAGTCTCCGACTTGGGGAGGGAACTGGGGCTCTTCTGG
CTTTGCCCCTCCTGAGATCCGCCTGTGCGATCATGCGGGAGATGGTAACC
ATGGACTCCATGgtcgaaggaaagaaagagtgTCGCGGCATTGACAGCGA
AACAGGAAGTAAtcaggacaagaaggaactCGGGCCGAAGTAGTCGATAA
AAATGGGAAGGGGGACTGCAAGATTCAAGTTTGAAAGCTATGAAGTACTT
TTTACTCCCTCCAATTTA back to topCoding sequence (CDS) from alignment at CM002465.1:423545..426562+ >rna5207 ID=rna5207|Name=rna5207|organism=Nannochloropsis gaditana|type=CDS|length=2592bp|location=Sequence derived from alignment at CM002465.1:423545..426562+ (Nannochloropsis gaditana)
ATGAGCCAAAGCGAAACCGGCGCCGTCCACCTACATAATCGTTCAACTAC
ATTATCATCACCATGGCTTTTAGAAGCCCGCCAAGAGATTGATGCCAAGG
CAAAGCCACCGGGGTCTTTAGGTTTACTGGAGGACTGGGCAGTTAAAATC
TCAGACATCCAACAAACTCTGCGCCCACATATTTCTGCTGCTCGCCTAGT
ACTCTTCGCAGGTGACCACGGCATTACGCTATCTCATCCGGGCGTGTCAG
CGTATCCCCGGGAAGTGACAAGACCTATATTTCAAGACATCGCTTCAGGG
ACTGGAGCAAGTGCAATCCTAAGCCGAAGCAACGGCTGCGAACTGAACAT
CGTTGACGTAGGCATTGATACATGTAAGGATGAAAGATATCCATATGAGA
ATGGCGGTGCTTCGTTCACGATTGCCGGCGGGGCGCATCACATCACTGTG
ACCCAAGCGAAGGTGAGTAGGGGCTCGAGAGACATGACGCAGGGCCCAGC
GCTAACCCCCGAGGAACGGGCTGCAGCCCAAAACGTGGGAGCCGAGGCTG
TGCGAAGATACCTTGCTGAACATGCGAAGGCCCACCCTGCCCCAGGTGCC
ATCAGTTGCAACGAGGACACAACGGGAGGGGCGAGTTCTCATTCGAGGCT
TGCGCTCTGCATTGGTGAACTTGGCATTGGAAATACCACCGCTGCCGCTG
CACTCGTAGCCGCATTAACAGGCTCGCCAGCAGCGCTGGTCACGGGCAAA
GGAACGGGTCTAGATCCGGACGGGGTGAACCTGAAGGCTCAAGCTATTGA
AAAAGCTCTTGCTGCCAACAGTGAGCTGGTCCGGGAGAGGGAtcccgccc
acgtcctcgaAGCTGTTGGGGGTCTCGAATTGGCCGCCATGGTAGGCGCT
TACTTGGAAGCGGGTCGATGGCGCATGCCTATCTTGGTCGATGGCTTCGT
GTCGGGGGCAGCGGCTCTGGTCGCGCTCCAttttcaccctcctcttgcag
CATTCTTGTTCTGGAGCCACCAGTCAGACGAGAAAGGGGCCTCAGTGTTG
CTGCAGGCCGTGGCAACCAAGGCACAGGAAATCGATGTACCCTATTTCCC
GCCGCCTCTCATGATGAGTCTCCGACTTGGGGAGGGAACTGGGGCTCTTC
TGGCTTTGCCCCTCCTGAGATCCGCCTGTGCGATCATGCGGGAGATGGTA
ACCATGGACTCCATGgtcgaaggaaagaaagagtgTCGCGGCATTGACAG
CGAAACAGGAAGTAAtcaggacaagaaggaactCGGGCCGAAGTAGATGA
GCCAAAGCGAAACCGGCGCCGTCCACCTACATAATCGTTCAACTACATTA
TCATCACCATGGCTTTTAGAAGCCCGCCAAGAGATTGATGCCAAGGCAAA
GCCACCGGGGTCTTTAGGTTTACTGGAGGACTGGGCAGTTAAAATCTCAG
ACATCCAACAAACTCTGCGCCCACATATTTCTGCTGCTCGCCTAGTACTC
TTCGCAGGTGACCACGGCATTACGCTATCTCATCCGGGCGTGTCAGCGTA
TCCCCGGGAAGTGACAAGACCTATATTTCAAGACATCGCTTCAGGGACTG
GAGCAAGTGCAATCCTAAGCCGAAGCAACGGCTGCGAACTGAACATCGTT
GACGTAGGCATTGATACATGTAAGGATGAAAGATATCCATATGAGAATGG
CGGTGCTTCGTTCACGATTGCCGGCGGGGCGCATCACATCACTGTGACCC
AAGCGAAGGTGAGTAGGGGCTCGAGAGACATGACGCAGGGCCCAGCGCTA
ACCCCCGAGGAACGGGCTGCAGCCCAAAACGTGGGAGCCGAGGCTGTGCG
AAGATACCTTGCTGAACATGCGAAGGCCCACCCTGCCCCAGGTGCCATCA
GTTGCAACGAGGACACAACGGGAGGGGCGAGTTCTCATTCGAGGCTTGCG
CTCTGCATTGGTGAACTTGGCATTGGAAATACCACCGCTGCCGCTGCACT
CGTAGCCGCATTAACAGGCTCGCCAGCAGCGCTGGTCACGGGCAAAGGAA
CGGGTCTAGATCCGGACGGGGTGAACCTGAAGGCTCAAGCTATTGAAAAA
GCTCTTGCTGCCAACAGTGAGCTGGTCCGGGAGAGGGAtcccgcccacgt
cctcgaAGCTGTTGGGGGTCTCGAATTGGCCGCCATGGTAGGCGCTTACT
TGGAAGCGGGTCGATGGCGCATGCCTATCTTGGTCGATGGCTTCGTGTCG
GGGGCAGCGGCTCTGGTCGCGCTCCAttttcaccctcctcttgcagCATT
CTTGTTCTGGAGCCACCAGTCAGACGAGAAAGGGGCCTCAGTGTTGCTGC
AGGCCGTGGCAACCAAGGCACAGGAAATCGATGTACCCTATTTCCCGCCG
CCTCTCATGATGAGTCTCCGACTTGGGGAGGGAACTGGGGCTCTTCTGGC
TTTGCCCCTCCTGAGATCCGCCTGTGCGATCATGCGGGAGATGGTAACCA
TGGACTCCATGgtcgaaggaaagaaagagtgTCGCGGCATTGACAGCGAA
ACAGGAAGTAAtcaggacaagaaggaactCGGGCCGAAGTAG back to top
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