rna5195, rna5195 (mRNA) Nannochloropsis gaditana

Overview
Namerna5195
Unique Namerna5195
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2760
Alignment locationCM002465.1:388909..389832 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100236g2.4064.mrna
Orig protein idgnl|cribi|Naga_100236g2.4064
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:388909..389832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100236g2gene5015Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5195rna5195-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25488.1cds5183Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5195 ID=rna5195|Name=rna5195|organism=Nannochloropsis gaditana|type=mRNA|length=2760bp
AGCGACAACTGAACTTAACGCAAGCGCGTTCGACTGATGACGGCCCATCG
AACGTTTTTATATCAGCTTCACTGGAATGTGTTGTGATGTGTCGCGCACA
CTTCATGGTTCTACCATTGAAGAGTATAATTGAAAATTGTAACGCATTAA
ATATTGTCTCACAAGTGTCGTAGAAACTTGCATTTTTTGATTTGTTACGG
AAGGGAAGCGTACTTCGACCACAGGCGTGATGGAAGACGAACCGAGTACA
TCTGTTGCTACTATTCATAAGAAACAAATCAATTGAGTGCTAGGTCACAC
CATGCATATGTAACGACTTGAGGCGTACAATATCCTTACTATGTGAGACC
ATCTTATTGCAGTTACCTGGTGTATGTATCCCTGTCTTTACGTCAGGCAT
CAGGTTCATGTTCTTCACTCCGCGTTCCCTCAGTGTTCTACGCAACTACT
CGTATGGAGACATTATCGACCCTTCACTCGCAACTCTAACAGACTTTATT
ACCTTTATATTACAAAAGAATTTACAGTCTAAATTTTGCTTGCACGCCAA
GTTCCAGGAAAATGGCATTGCGTCTCATTCTTACCTTTCTCCCCTTCAGA
CAAGAGCATGCAACAGACAGATGGACAATGCTTTCCATACATATTGTTTC
AAGCCCACAACCACTCGCAAATTCACGTGCCTGTGTTATTTCAAAGATGA
TCGACAGGCTTTCGTACGCAATTTGGTCTATTCGGACTCTAACAAAGGCT
TCACAAAACTTTCCTACGGTCCTCTCCCCTACAGGCAGACTGGGAATGGC
CCCGCCCGGTCCTTCCCCGTCAACGGCCCACCAACGGCCCGTATGTGTCA
AAATGGGAGATTTGCTTCACGTGACATTTCTTGCCGCAGCCGGTAGCCCC
TCACCCACGTCCCCAGAGCCGTCCACGCTTGCCTTGTGTCCACCTCCCGC
TGGGCCCACCCCTCAGCCCGTCTGCCTCACTGCCGCCTCGGGAGCATGGC
TCGAAGACGCCTCAGCTGTGTGCTTGCACAGCGTGGGAACGAGCCTCACC
AGACGCGACCCGGATCTCAACACATTGCCAGAGAGAGTGAAAGTCGGAGA
CGTGGTGACTGTGAGTGGGGCAGGGGGCTCGAACGCCTGGATGCTGGACG
GGCGCTCCGATCAGTTGTGCTGGGGCGACACGGAGAAAGGGAAGGACAGA
AGGCAAGCATTTGTCATCGCACCACCACCTTCGACCGAATCCTTGCCGGA
ATATGTGGGAGTAAATGAGGAAGAGGGAGAGCGGGAAGACGCTGGGGGCG
CGTTGCGCGTGGGCGACGCGTTCGTCCTTGTCCCCGTGGGGGGCGAGGGA
CTCGAGAGCCGGAGATTGGTGGCCCGCATACCCGGATACAAGGACATGCT
GAGAAGCCCTGCCTCCGTGCTAGGCTCGTCCTCCTCCCCCTCGCACAGCC
ATCGCGGCATAGATCCTGCGGCTCCTCCGCCCCCCGCCGCCTCCCTCTCC
TCGCCCTCCTCCCCCCCTCCCCCCTCCCGGCCCGTGGCCGAGCGTTCTCC
TGTCTATGAGCTCTGCCTTCGTTGCGGGGAAAAGGAAGGGATGGACGTGG
GCTCTGAGCCACCCCCCTCGTACCCCTTGTTTGTGAGGATCGCCTCTCGC
CTTCCAGCCGGCGCCTCCCTGCCGCCCATTCCCCCCGCGGACCCGGGAGC
CCTCGGAGTCGCCCTCCCCCACCCTCCCTCCCCCTCTGCAAACCCCAGGC
ACGGGGAAGAGCAGGGCTCCAGGGAGGGAGCGGACAGCGTGGTCTCGGTC
CTCTTCCAGCAAGGGGACTTGGGCCTGTCTCTCGCACGCACCCCCTCGGG
GCGGGCGCGCGTCCTCCGGCTGCAGCCCCACACCCAGGCGGATCGGAACG
GCATCCGCGCTGGAGATGTCATCATCCAGCTCAACGAGGACTGGGATCTG
AGCAAGCAGGTGCTGGATAGCGAGAGCTGGGCCGCCATGGTGCAGTACAT
CAAGACGAGCCCGCGGCCGTTACGGCTAACGGTCGCAAGAAAAAGGCCGA
CGCCCTCGCGCCCATCGCCTCCACAACCATTTCTCTCAGATCCGTCCGAG
GGAACAGACGAGCAGGCGGGGGCTCGGACTGCTTCTCCTTGTGCGACTCC
CTCGCCCCGACCCCCGGGCGCGGCCCTTTGCCTGCCGGCCTGCCCCCCGG
GCCTGCGTGCAGACCCAACCTCTGCCCTCCCGTCCCCCGCAAGGTCATCC
CGGAAATTGCTTTTTCGAGGGCCTTTGAGGCTCTGGCAGGAAGGTCGGCT
TTGGGGGGGGTCGTGGGAGGAAAGGGACGCGTACCTTTTCTCCGATGCCT
TCGTCCTCGCTTTTCCTCCCTCCCCCCCCCTTCTGGCGGCCCCCTCAAGG
CTCCAGCTATGGAGATTGACGCATCCTGGGCCTTGGCCACCTGCAAGCTC
AGGGAGGAGGGGGGGAAGGAGGGCGGGGAGAAGGTAGGGGTCGGGAGACG
GGACGGGGGCTGCTTCGAGCTGGTCACGCCGCTGCGGATGTACGTCCTCG
CAGCTCCTTCCCCCTCGGAACGGGAGGGCTGGCTCGCCGCCATCTATGCT
GGCATGGTCGCCTTGGCGCGGATGGGGATGGTCGGAGGTGGGGAGGGAGG
GCAGGCGGACGTGGGGATGCGGCATCAGCTAATTTTAGACTCCTTGCATG
CGGCGGTGGTGTATGGGAAAATGGATCGGGTGCGTGCCCTTGTGGGGCGA
AGGGAGGAAG
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protein sequence of rna5195

>rna5195-protein ID=rna5195-protein|Name=rna5195|organism=Nannochloropsis gaditana|type=polypeptide|length=135bp
MYSRQSVPLARHPCTRGIKLGNDVLRTPAFLRIENYIFHTPDFFQRRDRL
FSYPRGKTPLPAPLLLSTQHDMGAGSRSGHHEPSRVASSKIFLRRGVDIF
ALKEKILIQHQKCTSGPLPSVSGMPIVSITNVIYE
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mRNA from alignment at CM002465.1:388909..389832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5195 ID=rna5195|Name=rna5195|organism=Nannochloropsis gaditana|type=mRNA|length=924bp|location=Sequence derived from alignment at CM002465.1:388909..389832+ (Nannochloropsis gaditana)
ATGTACTCGGTTCGTCTTCCATCACGCCTGTGGTCGAAGTACGCTTCCCT
TCCGTAACAAATCAAAAAATGCAAGTTTCTACGACACTTGTGAGACAATA
TTTAATGCGTTACAATTTTCAATTATACTCTTCAATGGTAGAACCATGAA
GTGTGCGCGACACATCACAACACATTCCAGTGAAGCTGATATAAAAACGT
TCGATGGGCCGTCATCAGTCGAACGCGCTTGCGTTAAGTTCAGTTGTCGC
TTATACAGGAGCAAAAATTGTCACTAGCACGCATCAATGACGACAAATCA
TTTTTAAAACtcaaaaaaaatgaaattgTGGGAATTTTTTGTCATGCAAT
GCCGAAATATATCCATCATCGCATAAATCACGGAAAGAAAAACCGCTTTC
GGATCGTGAGCCACACTCTCATTATGGACTTGGTGGTATGTAGAGACAAA
GTGTACCACTTGCCCGCCATCCTTGCACTCGGGGCATTAAGCTAGGCAAT
GACGTTTTACGGACGCCAGCTTTTTTGCGCATTGAAAATTACATTTTCCA
TACCCCTGATTTCTTCCAACGAAGAGATCGACTTTTTAGCTACCCTCGCG
GTAAAACCCCATTACCCgcaccccttcttctctccacGCAACACGATATG
GGTgctgggagcaggagcggacATCATGAGCCGTCGCGTGTAGCGTCTTC
GAAAATTTTCCTCAGGCGTGGGGTCGATATCTTCGCTTTAAAGGAGAAAA
TCTTGATACAACATCAAAAGTGCACATCGGGTCCTCTGCCTTCCGTGTCA
GGCATGCCGATTGTTTCCATAACTAACGTTATCTACGAGTAATAATATCT
GAGCTCCTCACAAATGATGTTTCAATCGCGTCAATACACGATGATAATGA
AGTAATCTGAACAAGAAAGCCGGC
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Coding sequence (CDS) from alignment at CM002465.1:388909..389832+

>rna5195 ID=rna5195|Name=rna5195|organism=Nannochloropsis gaditana|type=CDS|length=816bp|location=Sequence derived from alignment at CM002465.1:388909..389832+ (Nannochloropsis gaditana)
ATGTACTCGAGACAAAGTGTACCACTTGCCCGCCATCCTTGCACTCGGGG
CATTAAGCTAGGCAATGACGTTTTACGGACGCCAGCTTTTTTGCGCATTG
AAAATTACATTTTCCATACCCCTGATTTCTTCCAACGAAGAGATCGACTT
TTTAGCTACCCTCGCGGTAAAACCCCATTACCCgcaccccttcttctctc
cacGCAACACGATATGGGTgctgggagcaggagcggacATCATGAGCCGT
CGCGTGTAGCGTCTTCGAAAATTTTCCTCAGGCGTGGGGTCGATATCTTC
GCTTTAAAGGAGAAAATCTTGATACAACATCAAAAGTGCACATCGGGTCC
TCTGCCTTCCGTGTCAGGCATGCCGATTGTTTCCATAACTAACGTTATCT
ACGAGTAAATGTACTCGAGACAAAGTGTACCACTTGCCCGCCATCCTTGC
ACTCGGGGCATTAAGCTAGGCAATGACGTTTTACGGACGCCAGCTTTTTT
GCGCATTGAAAATTACATTTTCCATACCCCTGATTTCTTCCAACGAAGAG
ATCGACTTTTTAGCTACCCTCGCGGTAAAACCCCATTACCCgcacccctt
cttctctccacGCAACACGATATGGGTgctgggagcaggagcggacATCA
TGAGCCGTCGCGTGTAGCGTCTTCGAAAATTTTCCTCAGGCGTGGGGTCG
ATATCTTCGCTTTAAAGGAGAAAATCTTGATACAACATCAAAAGTGCACA
TCGGGTCCTCTGCCTTCCGTGTCAGGCATGCCGATTGTTTCCATAACTAA
CGTTATCTACGAGTAA
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Synonyms
Publications