rna5191, rna5191 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5191
Unique Name	rna5191
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2257
Alignment location	CM002465.1:380311..382511 -

Link to JBrowse

Properties


Property Name	Value
Product	arginine biosynthesis bifunctional protein
Orig transcript id	gnl\|cribi\|Naga_100032g46.265.mrna
Orig protein id	gnl\|cribi\|Naga_100032g46.265
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:380311..382511 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100032g46	gene5011	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25522.1	cds5179	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5191	rna5191-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:380311..382511-
coding sequence from alignment at CM002465.1:380311..382511-

mRNA sequence

>rna5191 ID=rna5191|Name=rna5191|organism=Nannochloropsis gaditana|type=mRNA|length=2257bp
CTGCACAGCGTAAGGCGCAACAACATGCAATTCAGACATCCTCTTAAGAA
GGGTGCAACGAAAAAGTCAAATATCACCATTTCAGGTCTACATCTGGAGC
ATTCCTTCTACTTCGTACATGGCAAAGTCGGACTCGGATGTTCAAAGCCA
TTCCAGTAACCTCCTGTCCTGCTCCTCCCACCGCCCCGATGCCATGTAAT
CCAACCATGCTCTCTAATGCTGATGCCGTACCACCACATCCACGCAGACA
ATGTTGGCGATGCTTAAAAAAACACTTCCGGTCGATCGCTTGCCGGCGTG
CACGCTGCAAGGTATCAAGAACCCAGCCGTCACGACTCGTGAAATCAAAA
GTCGCGTTCAGCACCCTCCTCTTCCTGGACACGGCCCGGCGCTCTTGACC
TCGCAAACCACATCATTCTATCACGCGCATCGCGAATCCAAGTCTTTACG
CCCCTCACCATTACATTTGAATGCCCGTCCACCATCCCGTCCCGCCTCTT
CCGACGCAAAAGCCTGGGCAGACCTGAACCCGCCACATTCCCCCCAAGCG
TCTTCATCAGTCACACCAACCGATATTTCTCGTTTTCAAGCCATTCTGAC
ATCGACAAATCCCAGTCACGTCTCTGCAAGGATGGGCAATGACCAAGCCA
GCACAATGAAGCCCTCGTGCGATGCCTCCTCTGCAGGCGGTGCTAGCGCT
ATTCCTCGCTCTCCCTCCTCCGCTGCCGGCAAACTCCTCTTGGCCCCCTC
AGGCCCGGACGACGAAAATTTGCTCGCCCCCTACACACAAGACTGGACTC
ACAAGTGGAAAGCTCCCCAGTGCCCAGCGGTCCTTCAACCCCGCACGACC
GAGCAGGTGGCGGGGCTCCTGCGGCATTGCTATGAGAGAGACCTCCACGT
GGTCCCTCAGGGCGGAAACACGGGTCTGGTCGGGGGCGGGATCCCCCTCG
CAAACGAAGTGATCCTTTCCCTTGCGAACATGAATCAAATTATCAGCTTT
GACGCCGCCAGCGGCATCCTGGTCTGCGAGGCAGGCTGTGTCCTCGAGGA
GCTCGACGCGTGGTTGCGCCCCCATGGCTACATCATGCCGCTCGATTTAG
GCGCCAAAGGCAGCTGTCAAATCGGCGGCAACGTGTCCACCAATGCGGGG
GGGCTACGCTTCCTCCGGTACGGATCTTTGCACGGCTCGGTCCTCGGTCT
TGAGGTGGTGCTGGCCGACGGGCGCGTGCTCGACATGCTCAGCACCTTGC
GCAAGGACAACACGGGGTTGGACTTGAAGCAGATCTTCATCGGCGCCGAG
GGCACCTTGGGCGTTATCACCAAGGTCTCCCTCCAGGTGCCCCCGGCGCC
TGCTGCGGTGCAAGTGGCCCTGGTGGGGTTGGAAAGCTTCGAGAAGGTCC
GGGAGATGGTCATGCTCAGCAAGCGGAAGCTGGGCGAGATCCTGTCCGCG
ATGGAGCTGGTGGACGCCGCTGCCATGGACGTGGTGGTAGGCAAAGCCGC
GTGGGGCCTGCGAAACCCTCTGGCGGGGGGATCGGGCGCGAACCCGCCCT
TCCCTTTCTACATGCTCTTGGAGACCTCGGGCTCGGGCGAGGCCCACGAC
CGGGAAAAAATGGAGGAGCTGCTGGAGGCGGCCCTAGAGGGAGGGGTGGT
GGGCGACGGTACCGTCGCGCAGGACCTGGCCCAGGCCCAGGAGATCTGGA
AGCTGAGAGAGTTGATCCCCGTGGCTATGGAGGAGGAGGGGCGGGTCCAC
AAATTCGACGTCTCCCTCCCCCTCTCCGCTTTCTATGCCCTGGTCGAGCG
CACACGGGAGGCCTTAGAAGAGGGAGGGGTGGTAATGGGGGAGGGAGGGG
GGGTGAGGGTGGTTGGGTACGGCCATCTGGGGGATTCCAACCTGCACCTG
AACGTGTCGGTGCCACGCGAAGCCCCTGACCCGCCCGAGGTATCCCGGGT
CGTCAGCAGGGTGCTCCCCTGGGTGATGGAGCACAAGGGCAGCGTGAGCG
CCGAACACGGCTTGGGCCAGCTGAAAAAAACGTATTTGCTGCAGACCAAA
AGCAAAGAGGTGGTGGACGTGATGCGGGGGATGAAGAAGATGCTGGACCC
GAAGGGCATTTTGAACCCGGGCAAGTTTTTCCCAGACGACGCTTGACTGG
GGAGGGGTCTAGGGTGGGGTCCCCGCATTTGGGAAAAATATACATAGATG
AGTGTACACAAGCAATGAAACGGCCATGTGAAAAGAATCAGCCTGCGTGT
GAATACT

protein sequence of rna5191

>rna5191-protein ID=rna5191-protein|Name=rna5191|organism=Nannochloropsis gaditana|type=polypeptide|length=538bp
MMACKALVIGFLGIANEVTAISSTVSGFCFRRAFFTTRRASSFSAAARMT
TQKHPRALFLNPENQHAVDEARRRHYRASSTALHSSSSSSPNPSSLSFSS
KEDYLAHLKRIGQLPAGFKCGTSWISFTPVEANFPSRMNVTLIALDEPTD
KFAIAFTKNAFPGAPIRVGRERLKETHLQAIVVNNKISNVCPGGEGDGGV
GDAEEVCQAVARRLGLPSGKLVLPSSTGVIGWRLPRQAIIDAVPRVLETM
QAASVVPAAAGILTTDRYPKVRAATVAGGKIVGIAKGAGMIEPNLATMLV
YLLTDLALPRDVLRAWLPEVVGGSFNCISVDSDQSTSDTVALVSSGKVAV
SESDYPAIKASLTSLAQRLAEDIVRNGEGTNHVIELHVSNAPSVEVARAL
GRHVINSPLLKCAIAGNDPNVGRLAAAVGSYVGNQGLTEGLRLERCRLLM
GGQVVFKGGAFELDPEKEALLVEHMKDAQLDPGPLTMDSGSHVTFPAHEK
NVKVEVDLGEQAGKGVGLTLYGSDLTYAYVAENADYRS

mRNA from alignment at CM002465.1:380311..382511-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5191 ID=rna5191|Name=rna5191|organism=Nannochloropsis gaditana|type=mRNA|length=2201bp|location=Sequence derived from alignment at CM002465.1:380311..382511- (Nannochloropsis gaditana)
CTAGTGTAAAATACACTGCGCTCAAGCGTTGCCCGGAACCAATATCCTTC
ATGCGTCCATAGCGATTCATTAACATATCGCGCTGGTCGTGTGTTGGCTC
GATTTTTCCTCAGACTGTGGACGTTGAAGTCCTCAGCGACTCGTGCTGGA
ATGGCTTGAACGAGACCCGTATCGGCTGTTTTCATAACGTACCCTGGACG
TCGACAACGCAGTAAAACTAGACTGCATGGTTTGTCGTCAATCATGACAC
TTCTACGCTACCGTTTGTGCGTCGTTTTCTTCGCGTCCCACATTCACAAC
TCCCTATCTGATGTAAACTAGCGGATGTTCCTGGCAGTGTGCTTCCGGGT
GTTATTGTCCTTCATCTCACGCTACGAGTTCAGGCCCAGCTTGCTCACCA
TCGTGCAAACCAACTCTAAAACAGGCCATGATGGCTTGTAAAGCTCTTGT
TATTGGCTTCCTAGGCATCGCAAACGAAGTCACCGCCATTTCCTCCACTG
TATCCGGTTTCTGCTTTCGGCGTGCGTTCTTCACGACACGACGCGCGTCA
TCATTCAGTGCTGCCGCTCGCATGACCACTCAAAAGCACCCACGCGCATT
ATTCTTGAACCCTGAGAATCAGCACGCAGTGGATGAGGCTCGCCGGCGGC
ACTATCGGGCGAGCAGTACAGCCTTGCATTCGTCCTCCTCCTCCTCCCCC
AACCCCTCCTCCCTCTCCTTCTCCTCCAAAGAAGACTACCTGGCACATCT
CAAGCGCATTGGTCAGCTGCCGGCAGGTTTTAAATGCGGCACGTCTTGGA
TTTCATTCACCCCCGTTGAAGCCAATTTTCCGTCGCGCATGAACGTGACG
CTCATTGCTCTTGACGAGCCAACCGATAAATTCGCAATCGCATTCACCAA
AAATGCGTTTCCCGGGGCCCCCATCCGTGTGGGACGCGAGCGCCTCAAAG
AGACGCACCTTCAAGCCATCGTGGTGAACAACAAGATCAGCAACGTGTGC
CCGGGGGGGGAGGGCGACGGGGGAGTCGGCGACGCGGAAGAAGTCTGCCA
GGCCGTGGCCCGACGACTCGGGCTGCCGTCCGGAAAGCTGGTACTACCTA
GCTCCACGGGCGTCATCGGGTGGCGATTGCCCCGCCAAGCCATCATTGAC
GCCGTCCCCCGGGTCTTGGAGACGATGCAGGCGGCCTCGGTCGTGCCCGC
GGCCGCCGGGATCCTCACCACGGACCGGTACCCCAAGGTACGCGCCGCCA
CGGTGGCGGGGGGGAAAATCGTCGGCATCGCCAAAGGTGCCGGCATGATC
GAGCCCAATCTCGCCACCATGCTCGTCTACCTCTTGACGGACCTGGCCCT
GCCCCGCGATGTCCTCCGGGCCTGGCTCCCGGAGGTGGTGGGCGGGAGCT
TCAACTGCATCAGCGTCGACAGCGACCAGAGCACGTCCGACACGGTCGCT
CTCGTCTCCTCGGGCAAGGTGGCAGTCTCCGAGTCGGACTACCCCGCCAT
CAAAGCCTCCCTCACGTCCCTGGCCCAGCGCCTGGCCGAGGATATTGTGC
GCAACGGGGAGGGTACCAACCATGTCATCGAACTGCACGTCTCCAACGCC
CCCTCCGTGGAAGTAGCGCGCGCCCTGGGGAGGCACGTGATCAACTCACC
TTTGCTTAAGTGCGCGATCGCGGGGAATGACCCCAACGTAGGGCGTCTGG
CGGCGGCCGTGGGCAGCTATGTGGGGAATCAGGGCCTGACTGAAGGGCTG
CGGCTGGAAAGGTGTCGCCTCTTGATGGGCGGGCAGGTGGTGTTCAAGGG
GGGGGCCTTCGAGCTCGATCCTGAGAAGGAGGCTCTCTTGGTCGAGCATA
TGAAGGACGCGCAGCTTGACCCGGGCCCTTTGACAATGGACAGTGGCTCG
CATGTCACCTTTCCGGCCCACGAGAAGAATGTGAAAGTAGAAGTAGACCT
AGGGGAGCAGGCGGGGAAGGGCGTGGGACTGACACTGTACGGTAGTGATT
TGACTTACGCTTATGTCGCGGAGAACGCTGATTATAGATCGTGAGGGTCA
AGGCGGGGAGGGCGGGGGTATTGGATTCTTGGGGAGGCTACAGCGATAAG
GAGGGAAAACTGCCGGAGTGGCATGGCTCCAGTATTCACACGCAGGCTGA
TTCTTTTCACATGGCCGTTTCATTGCTTGTGTACACTCATCTATGTATAT
T

Coding sequence (CDS) from alignment at CM002465.1:380311..382511-

>rna5191 ID=rna5191|Name=rna5191|organism=Nannochloropsis gaditana|type=CDS|length=1617bp|location=Sequence derived from alignment at CM002465.1:380311..382511- (Nannochloropsis gaditana)
ATGATGGCTTGTAAAGCTCTTGTTATTGGCTTCCTAGGCATCGCAAACGA
AGTCACCGCCATTTCCTCCACTGTATCCGGTTTCTGCTTTCGGCGTGCGT
TCTTCACGACACGACGCGCGTCATCATTCAGTGCTGCCGCTCGCATGACC
ACTCAAAAGCACCCACGCGCATTATTCTTGAACCCTGAGAATCAGCACGC
AGTGGATGAGGCTCGCCGGCGGCACTATCGGGCGAGCAGTACAGCCTTGC
ATTCGTCCTCCTCCTCCTCCCCCAACCCCTCCTCCCTCTCCTTCTCCTCC
AAAGAAGACTACCTGGCACATCTCAAGCGCATTGGTCAGCTGCCGGCAGG
TTTTAAATGCGGCACGTCTTGGATTTCATTCACCCCCGTTGAAGCCAATT
TTCCGTCGCGCATGAACGTGACGCTCATTGCTCTTGACGAGCCAACCGAT
AAATTCGCAATCGCATTCACCAAAAATGCGTTTCCCGGGGCCCCCATCCG
TGTGGGACGCGAGCGCCTCAAAGAGACGCACCTTCAAGCCATCGTGGTGA
ACAACAAGATCAGCAACGTGTGCCCGGGGGGGGAGGGCGACGGGGGAGTC
GGCGACGCGGAAGAAGTCTGCCAGGCCGTGGCCCGACGACTCGGGCTGCC
GTCCGGAAAGCTGGTACTACCTAGCTCCACGGGCGTCATCGGGTGGCGAT
TGCCCCGCCAAGCCATCATTGACGCCGTCCCCCGGGTCTTGGAGACGATG
CAGGCGGCCTCGGTCGTGCCCGCGGCCGCCGGGATCCTCACCACGGACCG
GTACCCCAAGGTACGCGCCGCCACGGTGGCGGGGGGGAAAATCGTCGGCA
TCGCCAAAGGTGCCGGCATGATCGAGCCCAATCTCGCCACCATGCTCGTC
TACCTCTTGACGGACCTGGCCCTGCCCCGCGATGTCCTCCGGGCCTGGCT
CCCGGAGGTGGTGGGCGGGAGCTTCAACTGCATCAGCGTCGACAGCGACC
AGAGCACGTCCGACACGGTCGCTCTCGTCTCCTCGGGCAAGGTGGCAGTC
TCCGAGTCGGACTACCCCGCCATCAAAGCCTCCCTCACGTCCCTGGCCCA
GCGCCTGGCCGAGGATATTGTGCGCAACGGGGAGGGTACCAACCATGTCA
TCGAACTGCACGTCTCCAACGCCCCCTCCGTGGAAGTAGCGCGCGCCCTG
GGGAGGCACGTGATCAACTCACCTTTGCTTAAGTGCGCGATCGCGGGGAA
TGACCCCAACGTAGGGCGTCTGGCGGCGGCCGTGGGCAGCTATGTGGGGA
ATCAGGGCCTGACTGAAGGGCTGCGGCTGGAAAGGTGTCGCCTCTTGATG
GGCGGGCAGGTGGTGTTCAAGGGGGGGGCCTTCGAGCTCGATCCTGAGAA
GGAGGCTCTCTTGGTCGAGCATATGAAGGACGCGCAGCTTGACCCGGGCC
CTTTGACAATGGACAGTGGCTCGCATGTCACCTTTCCGGCCCACGAGAAG
AATGTGAAAGTAGAAGTAGACCTAGGGGAGCAGGCGGGGAAGGGCGTGGG
ACTGACACTGTACGGTAGTGATTTGACTTACGCTTATGTCGCGGAGAACG
CTGATTATAGATCGTGA

Synonyms

Publications