rna5190, rna5190 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5190
Unique Name	rna5190
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3191
Alignment location	CM002465.1:378125..380381 +

Link to JBrowse

Properties


Property Name	Value
Product	d-2-hydroxyglutarate mitochondrial precursor
Orig transcript id	gnl\|cribi\|Naga_100032g45.246.mrna
Orig protein id	gnl\|cribi\|Naga_100032g45.246
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:378125..380381 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100032g45	gene5010	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5190	rna5190-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25503.1	cds5178	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:378125..380381+
coding sequence from alignment at CM002465.1:378125..380381+

mRNA sequence

>rna5190 ID=rna5190|Name=rna5190|organism=Nannochloropsis gaditana|type=mRNA|length=3191bp
GAGTCCGACTTTGCCATGTACGAAGTAGAAGGAATGCTCCAGATGTAGAC
CTGAAATGGTGATATTTGACTTTTTCGTTGCACCCTTCTTAAGAGGATGT
CTGAATTGCATGTTGTTGCGCCTTACGCTGTGCAGACAGTAACTTTCCTC
GCGGTCAATACGCCCCCTTTCCCCCCCCACCCCAGAGGCAAATTAGCATG
CCCGATGGTGCAGGTCGAGCCGCCGCCGCCAAGAACGAGGGAAATAGCGA
TGTAAAGGACCTCGACGTGGAACCAACAGCGGAAAATATCGCTATGTCGC
CCGGTGACGCTGCCAGAGGGACTCCTGACGCGCCGGGAGAAGAAACGGGT
TCCACGGCCAGCGCCCCCTCGCCTGAGATGTCATCCGCCGTGGAGGCAGA
GTTCCCCGCTCCAATGGAGGTAGACGAAGCTGTTCTTCCCAGCGAGAGTC
AAGGAAGTGCCAACGGGGGCGTTCCCGACTCTGTCCAGGCCGAGGCTGGG
GCCGGTCCTGACGCCTCCCGTCCCGCGCCCCTGCTTCCCGCTGTGTCCGC
CCAGGTGCCTCCACCACCTCCAGCAGCCTCCGACACAGGGGAGGGCCTGA
CATTCCGGGTCCTTTACGGGGTGCTCGAGCACGAACCCTTGTGCTACCTG
TTAAAAGTCGGGGAGGCGACCCTTCTGCTGGACTGCGGGTGGGACGTGCA
GCTGGATGAAGCCTTGCTCGAGCCCCTGCTTCCTGTCCTTCCCCAGGTCC
AGCTCGTCCTCCTTTCCTTTCCAGACCTTTCCCACATGGGGGCCTTGCCC
TGGGTGGCCAAGCACCTGCGTCCCGGCGTTCCAATTTACACGACCCAGCC
TGTTTTCAAGATGGCTCAGATGGTGCTCTACGACCTGTACCTGAACAAGT
GCATGGACACTGCCAGCGGCGCCGCCGGGTGTCCCGCCTTTACACTCGAC
GAGGTGGACGCCGCCATGGCGCGTTTCCAGCTTCTCAAGTTCTCGCAGCC
GCTGGAAGTGCGGCAGCAGGGCCGCTTCTACCTGAGTGTGACTCCTTACC
CTGCGGGACGCATCCTGGGCGGGTGCTTTTGGCGCGTGAACTACAAGAAG
ATGGAGGAGATCGTGTACGCGGTGGACTTCAATCTCAAGAGCGAACGGCA
CCTTACGGGGGCCGTGGAGGCCTTCAATGCGCTGAGCGCGGACAAGGAGC
AACGACCCTGCCTCTTCATCACGGACGCGCGCCCCTCCCCCAATCTGTCG
ACGGACGAACGCAAGGTCGAGACCGAGTTCCTGGCGGCGGCTACCGGGAC
CTTGCGGAAGGGTGGGCATGTCCTCATCCCCGTCGAGACCTCGGGACGCG
CCCAAGAGCTCTTGCTCGCGCTCAACGGGCACTGGCGCTCCGATCGGCTC
CTGTGGGGCTACAAGATCGTCCTCCTCCACCACATGGCGCGTAACGTGCT
TCACTTCACCAAGAGCATGGTCGAGTACATGCACCCCGAGGTCATCCGGG
ACTTCGACCGCTCCCTGCGCAACCCCTTCTCGCTCAAGCACGTGGTCCCC
GCCCAGAGCATGCTCGAGCTGGAGGCCGCCATGGGCGAGTACCGGAACCC
GGTGGTGGTGCTTGCGAGCGACGAGGGCATGGACACGGGCTTCTCGCGCG
CCCTCGCCACCCGGTGGGCGAGCGGGCCTGAGAACGCCTTGTTATTGTGC
GGACATCTGCGGAAGGGGAGCCTGGCAGAAAGCTTCTGGAAGCTTCGGCA
CCTGCCCAAGGCGGCGCTTTCCTTCAGCGTTCCAGTTATAGAGCGCATCG
TGGGGGAGGAACTGGCAGGCCTGCGAGAGAAGGAAGACAGGGAGCGTCGG
AAGGCTTTGGAGGCGGAAGAGTTCCGCCGACAGGCCCATGAGCTTATGGA
GGGTACGGTGGGCGCGGTCTTCTCGGAGGAGCAAGGGATGTTGGCAGGAA
ACTCGTCCAACGGCCCCCTGGCACCCCTTCAGGCCTCCTCCTCGGCCAAA
CGCCTGCGTAAGACCGCTGCCATGTACCGCCGGCCTCGCTATCTGGTCTT
CGGGTGTCGAGATCCAGCCAGCGTGGAGGTGGATGCCTATGGAGAGCCGC
TGCGGGAGGGGGAATGCGTGGACGAGGGCAACGCCGGGGGGGGGCCGCAG
GCGGGGACTGCGCGGGGGCTCGTCTTCCAAGGGCCAGGGGCAGGGGGAGG
AGGTGGGGGAGTGCAGCGGTGGGGGTATCTGGACGACGTGCTCATGACAG
AGGGAGAGGCTCAGGTACGAGCGGGGACGGGTGCCTTGAAGTTTCTGATG
CGGGAGTCTGTGGTGGAAGTGCGGTGGCGCGTCAGAGCCTTCCCCATGGA
GGGCCGCTCCGACGGGAAGAACCTGCGGGCAATTTTGACGAACCTGGCGC
CTCGAAACATCATATTCGTGCGCGGCACGCCTGAGTCTTTCACGGACCTG
ACGTTGCATGCAGGCAAGATGCTGGGGCCCTCCACACGTCTGTGGACACC
GCCGGGCCCAGGGAAGGGAGGGCAGGAGGAGCAGCTGGGAGAGCTGGTGG
GGGTTCTCGATGGCCTTGTGGGGGGATCTGCTGCAGAAGGGGCCATGGCG
GCTTCTGTAGCCGCGGCAGCAGCCGCAGCCGCCACAGAAGCCGCCAGGAC
GGTGGGTATACGGTTTGATAGCAAGGTCACGGATGTGAGCTTGGAGGAGG
ACGAAGGAGAGGAGGAATGGAGGGAGGAAGCGGCACCCTTGGTGTTGAAA
GAGATGGGTAACTATCGTCTGGCGCTCGTGCAGGCAGTGGCCTCGGAGGA
CCGCGTGGATGCGAACGGAAAGCCTCTGCTGCGCTGCCAACCTGTCGTGG
CGACAAAGGGAGGCACCGTCTTACAAGACAAAGGTAGTGAGGAAGTGAGC
GATGGTGCAGAAACAGCTTTCTCAGTCCTGTCCCAGACAAGGGCGCCGCT
CTGGCTGGCGGACGGAGACGTGTTCTTGACGGAATCCTCTCAGCGCCAGT
CTCTGCGGCAGAAGCTCCGAGAGGCGGGTGTGAACCCCGACTTCCACGTT
GGACCGGAAGGGGCTTCCTTGATCTGCGATGGGACGACAGTGGTAAGGGT
GAAGGACAATAAAGTCATGCTAGAGGGCCCGCTTAGCGAGACTTACTTCA
AAGTTCGGCAAGCCATCTATTCGCGGTTCGTGGCTTTGTAG

protein sequence of rna5190

>rna5190-protein ID=rna5190-protein|Name=rna5190|organism=Nannochloropsis gaditana|type=polypeptide|length=631bp
MLAMLKKTLPVDRLPACTLQGIKNPAVTTREIKSRVQHPPLPGHGPALLT
SQTTSFYHAHRESKSLRPSPLHLNARPPSRPASSDAKAWADLNPPHSPQA
SSSVTPTDISRFQAILTSTNPSHVSARMGNDQASTMKPSCDASSAGGASA
IPRSPSSAAGKLLLAPSGPDDENLLAPYTQDWTHKWKAPQCPAVLQPRTT
EQVAGLLRHCYERDLHVVPQGGNTGLVGGGIPLANEVILSLANMNQIISF
DAASGILVCEAGCVLEELDAWLRPHGYIMPLDLGAKGSCQIGGNVSTNAG
GLRFLRYGSLHGSVLGLEVVLADGRVLDMLSTLRKDNTGLDLKQIFIGAE
GTLGVITKVSLQVPPAPAAVQVALVGLESFEKVREMVMLSKRKLGEILSA
MELVDAAAMDVVVGKAAWGLRNPLAGGSGANPPFPFYMLLETSGSGEAHD
REKMEELLEAALEGGVVGDGTVAQDLAQAQEIWKLRELIPVAMEEEGRVH
KFDVSLPLSAFYALVERTREALEEGGVVMGEGGGVRVVGYGHLGDSNLHL
NVSVPREAPDPPEVSRVVSRVLPWVMEHKGSVSAEHGLGQLKKTYLLQTK
SKEVVDVMRGMKKMLDPKGILNPGKFFPDDA

mRNA from alignment at CM002465.1:378125..380381+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5190 ID=rna5190|Name=rna5190|organism=Nannochloropsis gaditana|type=mRNA|length=2257bp|location=Sequence derived from alignment at CM002465.1:378125..380381+ (Nannochloropsis gaditana)
CTGCACAGCGTAAGGCGCAACAACATGCAATTCAGACATCCTCTTAAGAA
GGGTGCAACGAAAAAGTCAAATATCACCATTTCAGGTCTACATCTGGAGC
ATTCCTTCTACTTCGTACATGGCAAAGTCGGACTCGGATGTTCAAAGCCA
TTCCAGTAACCTCctgtcctgctcctcccaccgccccgaTGCCATGTAAT
CCAACCATGCTCTCTAATGCTGATGCCGTACCACCACATCCACGCAGACA
ATGTTGGCGATGCTTAAAAAAACACTTCCGGTCGATCGCTTGCCGGCGTG
CACGCTGCAAGGTATCAAGAACCCAGCCGTCACGACTCGTGAAATCAAAA
GTCGCGTTCagcaccctcctcttcctggacaCGGCCCGGCGCTCTTGACC
TCGCAAACCACATCATTCTATCACGCGCATCGCGAATCCAAGTCTTTACG
CCCCTCACCATTACATTTGAATGCCCGTCCACCATCCCGTCCCGCCTCTT
CCGACGCAAAAGCCTGGGCAGACCTGAACCCGCCACATTCCCCCCAAGCG
TCTTCATCAGTCACACCAACCGATATTTCTCGTTTTCAAGCCATTCTGAC
ATCGACAAATCCCAGTCACGTCTCTGCAAGGATGGGCAATGACCAAGCCA
GCACAATGAAGCCCTCGTGCGATGCCTCCTCTGCAGGCGGTGCTAGCGCt
attcctcgctctccctcctccgctgccgGCAAACTCCTCTTGGCCCCCTC
AGGCCCGGACGACGAAAATTTGCTCGCCCCCTACACACAAGACTGGACTC
ACAAGTGGAAAGCTCCCCAGTGCCCAGCGGTCCTTCAACCCCGCACGACC
GAGCAGGTGGCGGGGCTCCTGCGGCATTGCTATGAGAGAGACCTCCACGT
GGTCCCTCAGGGCGGAAACACGGGTCTGGTCGGGGGCGGGATCCCCCTCG
CAAACGAAGTGATCCTTTCCCTTGCGAACATGAATCAAATTATCAGCTTT
GACGCCGCCAGCGGCATCCTGGTCTGCGAGGCAGGCTGTGTCCTCGAGGA
GCTCGACGCGTGGTTGCGCCCCCATGGCTACATCATGCCGCTCGATTTAG
GCGCCAAAGGCAGCTGTCAAATCGGCGGCAACGTGTCCACCAATGCGGGG
GGGCTACGCTTCCTCCGGTACGGATCTTTGCACGGCTCGGTCCTCGGTCT
tgaggtggtgctggccgACGGGCGCGTGCTCGACATGCTCAGCACCTTGC
GCAAGGACAACACGGGGTTGGACTTGAAGCAGATCTTCATCGGCGCCGAG
GGCACCTTGGGCGTTATCACCAAGGTCTCCCTCCAGGTGCCCCCGGCGCC
TGCTGCGGTGCAAGTGGCCCTGGTGGGGTTGGAAAGCTTCGAGAAGGTCC
GGGAGATGGTCATGCTCAGCAAGCGGAAGCTGGGCGAGATCCTGTCCGCg
atggagctggtggacGCCGCTgccatggacgtggtggtAGGCAAAGCCGC
GTGGGGCCTGCGAAACCCTCTGGCGGGGGGATCGGGCGCGaacccgccct
tccctttctacATGCTCTTGGAGACCTCGGGCTCGGGCGAGGCCCACGAc
cgggaaaaaatggaggagctgctggaggcggccctagagggaggggtggt
gggcgaCGGTACCGTCGCGCAGGACCTGGCCCAGGCCCAGGAGATCTGGA
AGCTGAGAGAGTTGATCCCCGTGgctatggaggaggaggggcgggtccAC
AAATtcgacgtctccctccccctctccgctttCTATGCCCTGGTCGAGCG
CACACGGGAGGCCttagaagagggaggggtggtaatgggggagggagggg
gggtgaggGTGGTTGGGTACGGCCATCTGGGGGATTCCAACCTGCACCTG
AACGTGTCGGTGCCACGCGAAGCCCCTGACCCGCCCGAGGTATCCCGGGT
CGTCAGCAGGGTGCTCCCCTGGGTGATGGAGCACAAGGGCAGCGTGAGCG
CCGAACACGGCTTGGGCCAGCTGAAAAAAACGTATTTGCTGCAGACCAAA
AGcaaagaggtggtggacgtgATGCGGgggatgaagaagatgcTGGACCC
GAAGGGCATTTTGAACCCGGGCAAGTTTTTCCCAGACGACGCTTGACTGG
GGAGGGGTCTAGGGTGGGGTCCCCGCATTTGGGAAAAATATACATAGATG
AGTGTACACAAGCAATGAAACGGCCATGTGAAAAGAATCAGCCTGCGTGT
GAATACT

Coding sequence (CDS) from alignment at CM002465.1:378125..380381+

>rna5190 ID=rna5190|Name=rna5190|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at CM002465.1:378125..380381+ (Nannochloropsis gaditana)
ATGTTGGCGATGCTTAAAAAAACACTTCCGGTCGATCGCTTGCCGGCGTG
CACGCTGCAAGGTATCAAGAACCCAGCCGTCACGACTCGTGAAATCAAAA
GTCGCGTTCagcaccctcctcttcctggacaCGGCCCGGCGCTCTTGACC
TCGCAAACCACATCATTCTATCACGCGCATCGCGAATCCAAGTCTTTACG
CCCCTCACCATTACATTTGAATGCCCGTCCACCATCCCGTCCCGCCTCTT
CCGACGCAAAAGCCTGGGCAGACCTGAACCCGCCACATTCCCCCCAAGCG
TCTTCATCAGTCACACCAACCGATATTTCTCGTTTTCAAGCCATTCTGAC
ATCGACAAATCCCAGTCACGTCTCTGCAAGGATGGGCAATGACCAAGCCA
GCACAATGAAGCCCTCGTGCGATGCCTCCTCTGCAGGCGGTGCTAGCGCt
attcctcgctctccctcctccgctgccgGCAAACTCCTCTTGGCCCCCTC
AGGCCCGGACGACGAAAATTTGCTCGCCCCCTACACACAAGACTGGACTC
ACAAGTGGAAAGCTCCCCAGTGCCCAGCGGTCCTTCAACCCCGCACGACC
GAGCAGGTGGCGGGGCTCCTGCGGCATTGCTATGAGAGAGACCTCCACGT
GGTCCCTCAGGGCGGAAACACGGGTCTGGTCGGGGGCGGGATCCCCCTCG
CAAACGAAGTGATCCTTTCCCTTGCGAACATGAATCAAATTATCAGCTTT
GACGCCGCCAGCGGCATCCTGGTCTGCGAGGCAGGCTGTGTCCTCGAGGA
GCTCGACGCGTGGTTGCGCCCCCATGGCTACATCATGCCGCTCGATTTAG
GCGCCAAAGGCAGCTGTCAAATCGGCGGCAACGTGTCCACCAATGCGGGG
GGGCTACGCTTCCTCCGGTACGGATCTTTGCACGGCTCGGTCCTCGGTCT
tgaggtggtgctggccgACGGGCGCGTGCTCGACATGCTCAGCACCTTGC
GCAAGGACAACACGGGGTTGGACTTGAAGCAGATCTTCATCGGCGCCGAG
GGCACCTTGGGCGTTATCACCAAGGTCTCCCTCCAGGTGCCCCCGGCGCC
TGCTGCGGTGCAAGTGGCCCTGGTGGGGTTGGAAAGCTTCGAGAAGGTCC
GGGAGATGGTCATGCTCAGCAAGCGGAAGCTGGGCGAGATCCTGTCCGCg
atggagctggtggacGCCGCTgccatggacgtggtggtAGGCAAAGCCGC
GTGGGGCCTGCGAAACCCTCTGGCGGGGGGATCGGGCGCGaacccgccct
tccctttctacATGCTCTTGGAGACCTCGGGCTCGGGCGAGGCCCACGAc
cgggaaaaaatggaggagctgctggaggcggccctagagggaggggtggt
gggcgaCGGTACCGTCGCGCAGGACCTGGCCCAGGCCCAGGAGATCTGGA
AGCTGAGAGAGTTGATCCCCGTGgctatggaggaggaggggcgggtccAC
AAATtcgacgtctccctccccctctccgctttCTATGCCCTGGTCGAGCG
CACACGGGAGGCCttagaagagggaggggtggtaatgggggagggagggg
gggtgaggGTGGTTGGGTACGGCCATCTGGGGGATTCCAACCTGCACCTG
AACGTGTCGGTGCCACGCGAAGCCCCTGACCCGCCCGAGGTATCCCGGGT
CGTCAGCAGGGTGCTCCCCTGGGTGATGGAGCACAAGGGCAGCGTGAGCG
CCGAACACGGCTTGGGCCAGCTGAAAAAAACGTATTTGCTGCAGACCAAA
AGcaaagaggtggtggacgtgATGCGGgggatgaagaagatgcTGGACCC
GAAGGGCATTTTGAACCCGGGCAAGTTTTTCCCAGACGACGCTTGA

Synonyms

Publications