rna5184, rna5184 (mRNA) Nannochloropsis gaditana

Overview
Namerna5184
Unique Namerna5184
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length924
Alignment locationCM002465.1:360513..361717 +

Link to JBrowse

Properties
Property NameValue
ProductSerine hydrolase FSH
Orig transcript idgnl|cribi|Naga_100032g39.250.mrna
Orig protein idgnl|cribi|Naga_100032g39.250
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:360513..361717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g39gene5004Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5184rna5184-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25507.1cds5172Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5184 ID=rna5184|Name=rna5184|organism=Nannochloropsis gaditana|type=mRNA|length=924bp
ATGGCGACCGCAAGTTTCCCGCTTGTTACCTTAGAGGCCCTTGGGCGGCA
CCTCTCCAAATTGCGGGCAGCTACGACAAGCCTCCCTCCCGCCCCCCTCA
CATCGCTGCAATGGACAGCCTCCCCCGCTTTGCAGGATGCCCTGAAGCTT
CTCACGGATTCGGGAGACCGTGTGCGTGACACGGCCACGAAATTCAGCCT
CGTGCTCACCACCACCACCAGCGGGCCGGGGATCAAGTCCATCTGCGACG
AGATGCGCCAGAGCTGTGACTCTCTTCTCGCCGCTTTGGCCCTTCTGGTC
GGCCCAGCGATAGGCGCCGGGGGCCCTCTCATGGAGTTGTACTGCCAGCA
AGTGCGCAGCATTTTGCGAGCTATTGAGGAGCTCCTGCGGCACATCGCCT
CCCCCGACTCCAAACTTCTCTCTGCACCTCGGCCCTTGCGTTCTCCTGAG
GGCGTCAAGGATGAACTGGCCCCAAAGACGGGCGTGGTCTGGCAGCAGTG
CGAGGAGCTGAAAAAACTGCCGCGGAGCAACCGGGTTGCATACAGACGAG
CCTTCTTGACGCACCAATCGGCGGTAAAGGACACGCTTAGGGAGTTTCGG
GAAATGCTGGCGGAGGCGGAGGACGATGCTGGGACGGAGAGCGAGGAAGA
GGACGATGAGGAGGAGGAGGGGGAGGAGGGAGGATTGGCAGGGGAGATGG
CGGATTTGGAACTGGAAGAGGCCTTTTGGGGGGAAAACGGGGGAGGCGCG
ATGAGGGAATGGGAGAAGGAGAATCTGAGTCGGTGTCTGGTCCCTCTCGG
GCATTGCGGAGAGATGGTGAAGGGATTCTTGGAGGCGGTGGAGGAGGTGG
CGATGGAAGGGGGGGGGAGGGAGAGGCGGAGGGAGGGCAATACGCAAGAG
AAAGTGGTTGGATGGGGATCATAA
back to top

protein sequence of rna5184

>rna5184-protein ID=rna5184-protein|Name=rna5184|organism=Nannochloropsis gaditana|type=polypeptide|length=353bp
MHRDGARPGPSWTSPAHTLLSHPRIHASAPSPPPGRPCMPERKAVVPFCF
LSASLAISSALPPLASAVRAFFVSPAPTASSSPSVIVSSVPPDSRICMSA
AFPVASSPLTPASSTAPSPDQRSRRLKILCLHGYLQSASIFRGKLGSLRK
GLKSKADFVFLDAPFLAQARPSEDLLNAWTDQTPEGSLQPRPSKALHYTG
VAETTIPFLKQALAEHAPDGLLAFSQGATAAAILLAALQRDEREGKGQKE
GVSLPKFAILVGGFFPRDEAVGQGVKEGAPRLPTMFVGGAADQLVPLTRT
RELMACWDEAEKGWITLHEHGGGHFVPTWKGEFKEDVVRFVDRFTSGEGI
KGR
back to top

mRNA from alignment at CM002465.1:360513..361717+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5184 ID=rna5184|Name=rna5184|organism=Nannochloropsis gaditana|type=mRNA|length=1205bp|location=Sequence derived from alignment at CM002465.1:360513..361717+ (Nannochloropsis gaditana)
ATGCATCGAGACGGAGCGAGGCCAGGCCCTTCCTGGACGTCTCCTGCGCA
CACATTGCTTTCACATCCTCGCATTCACGCCAgtgcaccctccccccccc
caggcagGCCCTGTATGCCCGAACGGAAGGCCGTCGTACccttctgcttc
ctctctgcGTCCCTCGCCATCTCTtctgccctcccgccccttgCGTCCGC
TGTCAGAGCATTCTTCGTCTCTCCAGCCCCCACGGCCTCGTCCTCACCCA
GCGTCATCGTCAGCTCGGTCCCACCCGATAGCCGCATCTGCATGTCTGCT
GCCTTccccgtcgcctcctcccccctgacccccgcttcttccaccGCACC
CTCCCCTGACCAACGGTCTCGCAGGCTAAAAATCCTGTGTCTGCACGGAT
ACCTCCAATCCGCCTCCATTTTCCGGGGAAAACTCGGATCGCTTCGCAAG
GGGCTCAAGTCCAAGGCCGACTTTGTCTTCCTGGACGCACCCTTTCTCGC
ACAGGCACGCCCGTCGGAGGATCTTTTGAATGCGGTGGGagggtcgaagg
agggagggagggagaaggggaaggagggaaggagggaggaccaaGAAGTc
ctggaagaagagcaaggccgtggccgggggggggggaggatggggaagga
gtgcCTCGGGGACGAAGCTGGTGGCAGTGGACCGACCAAACGCCCGAGGG
GTCGCTGCAGCCTCGCCCTAGCAAAGCGTTGCACTACACGGGAGTGGCAG
AGACGACGATTCCCTTCCTCAagcaggccctggccgagCACGCGCCCGAC
GGTCTCTTGGCATTCTCGCAAGgagcgacggcggcggcgatcCTCCTCGC
GGCCCTGCAAAGagacgaaagggaggggaaagggcagaaggagggggtaa
GCCTGCCAAAATTTGCGATCTTGGTGGGCGGTTTCTTCCCCCGGGACGAG
GCAGTGGGAcagggcgtgaaggagggtgcGCCCAGGCTCCCGACGATGTT
TGTGGGGGGCGCGGCGGATCAACTGGTGCCACTGACGCGGACCAGGGAGC
TGATGGCGTGTtgggacgaggcggagaaggggtggaTCACATTGCAtgag
catggaggggggcATTTCGTCCCCACGTGGAAAGGGGAGTTCAAGGAAGA
TGTAGTCAGGTTTGTCGACCGATTTACATCGGGCGAAGGGATCAAGGGTC
GGtag
back to top

Coding sequence (CDS) from alignment at CM002465.1:360513..361717+

>rna5184 ID=rna5184|Name=rna5184|organism=Nannochloropsis gaditana|type=CDS|length=2124bp|location=Sequence derived from alignment at CM002465.1:360513..361717+ (Nannochloropsis gaditana)
ATGCATCGAGACGGAGCGAGGCCAGGCCCTTCCTGGACGTCTCCTGCGCA
CACATTGCTTTCACATCCTCGCATTCACGCCAgtgcaccctccccccccc
caggcagGCCCTGTATGCCCGAACGGAAGGCCGTCGTACccttctgcttc
ctctctgcGTCCCTCGCCATCTCTtctgccctcccgccccttgCGTCCGC
TGTCAGAGCATTCTTCGTCTCTCCAGCCCCCACGGCCTCGTCCTCACCCA
GCGTCATCGTCAGCTCGGTCCCACCCGATAGCCGCATCTGCATGTCTGCT
GCCTTccccgtcgcctcctcccccctgacccccgcttcttccaccGCACC
CTCCCCTGACCAACGGTCTCGCAGGCTAAAAATCCTGTGTCTGCACGGAT
ACCTCCAATCCGCCTCCATTTTCCGGGGAAAACTCGGATCGCTTCGCAAG
GGGCTCAAGTCCAAGGCCGACTTTGTCTTCCTGGACGCACCCTTTCTCGC
ACAGGCACGCCCGTCGGAGGATCTTTTGAATGCGTGGACCGACCAAACGC
CCGAGGGGTCGCTGCAGCCTCGCCCTAGCAAAGCGTTGCACTACACGGGA
GTGGCAGAGACGACGATTCCCTTCCTCAagcaggccctggccgagCACGC
GCCCGACGGTCTCTTGGCATTCTCGCAAGgagcgacggcggcggcgatcC
TCCTCGCGGCCCTGCAAAGagacgaaagggaggggaaagggcagaaggag
ggggtaaGCCTGCCAAAATTTGCGATCTTGGTGGGCGGTTTCTTCCCCCG
GGACGAGGCAGTGGGAcagggcgtgaaggagggtgcGCCCAGGCTCCCGA
CGATGTTTGTGGGGGGCGCGGCGGATCAACTGGTGCCACTGACGCGGACC
AGGGAGCTGATGGCGTGTtgggacgaggcggagaaggggtggaTCACATT
GCAtgagcatggaggggggcATTTCGTCCCCACGTGGAAAGGGGAGTTCA
AGGAAGATGTAGTCAGGTTTGTCGACCGATTTACATCGGGCGAAGGGATC
AAGGGTCGGtagATGCATCGAGACGGAGCGAGGCCAGGCCCTTCCTGGAC
GTCTCCTGCGCACACATTGCTTTCACATCCTCGCATTCACGCCAgtgcac
cctccccccccccaggcagGCCCTGTATGCCCGAACGGAAGGCCGTCGTA
CccttctgcttcctctctgcGTCCCTCGCCATCTCTtctgccctcccgcc
ccttgCGTCCGCTGTCAGAGCATTCTTCGTCTCTCCAGCCCCCACGGCCT
CGTCCTCACCCAGCGTCATCGTCAGCTCGGTCCCACCCGATAGCCGCATC
TGCATGTCTGCTGCCTTccccgtcgcctcctcccccctgacccccgcttc
ttccaccGCACCCTCCCCTGACCAACGGTCTCGCAGGCTAAAAATCCTGT
GTCTGCACGGATACCTCCAATCCGCCTCCATTTTCCGGGGAAAACTCGGA
TCGCTTCGCAAGGGGCTCAAGTCCAAGGCCGACTTTGTCTTCCTGGACGC
ACCCTTTCTCGCACAGGCACGCCCGTCGGAGGATCTTTTGAATGCGTGGA
CCGACCAAACGCCCGAGGGGTCGCTGCAGCCTCGCCCTAGCAAAGCGTTG
CACTACACGGGAGTGGCAGAGACGACGATTCCCTTCCTCAagcaggccct
ggccgagCACGCGCCCGACGGTCTCTTGGCATTCTCGCAAGgagcgacgg
cggcggcgatcCTCCTCGCGGCCCTGCAAAGagacgaaagggaggggaaa
gggcagaaggagggggtaaGCCTGCCAAAATTTGCGATCTTGGTGGGCGG
TTTCTTCCCCCGGGACGAGGCAGTGGGAcagggcgtgaaggagggtgcGC
CCAGGCTCCCGACGATGTTTGTGGGGGGCGCGGCGGATCAACTGGTGCCA
CTGACGCGGACCAGGGAGCTGATGGCGTGTtgggacgaggcggagaaggg
gtggaTCACATTGCAtgagcatggaggggggcATTTCGTCCCCACGTGGA
AAGGGGAGTTCAAGGAAGATGTAGTCAGGTTTGTCGACCGATTTACATCG
GGCGAAGGGATCAAGGGTCGGtag
back to top
Synonyms
Publications