rna518, rna518 (mRNA) Nannochloropsis gaditana

Overview
Namerna518
Unique Namerna518
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1203
Alignment locationCM002455.1:1304312..1305688 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100115g4.6573.mrna
Orig protein idgnl|cribi|Naga_100115g4.6573
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1304312..1305688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100115g4gene500Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna518rna518-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30148.1cds518Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna518 ID=rna518|Name=rna518|organism=Nannochloropsis gaditana|type=mRNA|length=1203bp
CTTCTTTGTAGCGCGAGGTTTTTGTGTCGCACTCTGGGAGGAACAGTCAG
ACGCACGTAATCTTTCCGTTGGCCCATGCACGGTTTCTATCCTGATTAGA
CGATCACGTGCTAAGTTCTTTCCCGATATATCTCTCACAATCATGTATGT
TATAATAATGTTGTAAACTGTCGTAATTTGGAGCATGCATGAGAGTAGCT
ACCATCGACACAATGCAACTCATTACGCATTAGTTTTAGTTGAGTAAACT
ACACTATAACTGCATGAAATACGTAAAGTAGGGAATTAATGACACAAGCT
CAATCTTTAAACCTTAAGGACAGGATTTGTCACTATTACAATGTATTCTA
TGAAGAGCATCGGTTTATCTCTGTTTTTGGCCGGAATGGCGCTTTTCTCT
TCGACGACTTTTGTCGATGCTCAAGTGATTGCTCAAGCCATGGTGAAGCC
ACTTGCTGTGAGGCCCGGTGGCAGGATCACTGCCACCCTTAACTTCGTCG
TTTCAAGCTTTGCGTCCAACGCCACGGATCCGGCCATAGCTGTGGGGTTT
GCAACGCTTGGAGCACAGGAGCTCGCGGCACTGAACAACAAAAACCGCAC
CACGAAGGGCAAGGCGAGCATGGATCCGCTTGCTAATGAATTGGTCATCA
GAGGATCCAGAATTTCCCCCAATAAATGGAGGCCCAAGTTGCGCACGAAT
GAGAGCGAATGGTACTCGGTGGCGTGGGGGATTCCGAAAGAAGGCACGTT
GTTGAAGAAGGTTTACAAAGTTGTTTGCAAAATCCGCGTCGGTAAAGGCG
TGGAAAGAAATACGGTCAGGAAAGTATCTGTGACTTTGATTGCCGGTAGC
TACATTTTCGAAGAGAGCCTGGATGTTTACATCAAGTAAATCATCCTATC
GGCGGTATATGTCTTGAAAGCAGCACATGAGTTGTCCGATTAACGAAGTC
CTGTGGGATTTTAGTTTGTCTAAACTCCCCGAGAATACTGTGATTCAATC
GAACAACAGTTTGGTTTCACTTAAATCAACGGACTGGAAATTATGAAACG
TGAAAGCACGGCGAGGTGAAAGAAAAAATGCAAGAGGGCATGAAGGGGTA
TCGCTGCTCGAATTTTTTTAAAACCGCAAGTCGTCCCTCTGTCCACAAAG
TTCGGACCAGAATATCATCTTAGTTCGGTGGATTCTATTACTCTATTTAT
GCC
back to top

protein sequence of rna518

>rna518-protein ID=rna518-protein|Name=rna518|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MLTICDFPTLLSSKQGLTRKNTFSSWYVRVSQIFAIISLPVTSSESSLRA
PAHALSRCKNASKAFVHLSTMECPGPCFPGLLKTRSTGPVSFLAPHVKCS
LVASLVHYASSPSRRRLY
back to top

mRNA from alignment at CM002455.1:1304312..1305688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna518 ID=rna518|Name=rna518|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp|location=Sequence derived from alignment at CM002455.1:1304312..1305688+ (Nannochloropsis gaditana)
CGGGCCCGGACTTTGCCTTCTCCGATTTTATTATTTTGTGAGCGCATATG
GAGTCATTTGCTGAGCACATGCTGTGAAATTGTGTCTTTATCCGGCTTCA
CACGAATACTGGAAGCTCTGACTGCCGGCGTGCTTCTTCGCCCGTCCCCG
GTGGACTGCTTCCACccgctctttttcttgctcgaTTTATGTTGAGAAGC
TCGCTCTATTTGTACCCTCGAAGCTCCCAGCGGTGAAGTCAATGATGGAT
TGGCGTAAATTGAATTCAAGCGCACCATTGTGTGCCGATCGTTTGCCAAC
CTCTGGTTTTAAGAAGCGCTTGGTATGCTCGAAACTCTCAATCTATGGAG
ACTGTGAGTCGAGTTTTTCTTCTCAAGCTCAGTCGAGCATTTTGCTTTGT
CCGTGCATCTTAAGTGCTCAGATTCTGGCCAATCAATTATCGTTGCTTGC
GAATTGACACAGGCGTCGCATCGAGGGCTTTGTGACACGTGAAAAAACGG
GCTGAAGGTCAGGACGCTTGTTCCAATGCTAACTATCTGTGATTTTCCAA
CACTCCTCAGCAGTAAACAGGGTCTCACACGTAAAAATACTTTTTCATCA
TGGTACGTCCGTGTTTCACAGATTTTTGCAATTATTTCTTTGCCGGTGAC
CAGTTCAGAGTCTTCCTTAAGGGCCCCGGCCCATGCTCTCAGCCGGTGTA
AGAATGCTTCGAAGGCTTTCGTACATCTTAGCACCATGGAATGTCCGGGG
CCTTGTTTCCCAGGTTTACTCAAAACACGTAGTACTGGGCCTGTTTCATT
TCTCGCACCGCACGTCAAGTGCTCTCTTGTAGCATCCCTTGTGCACTACG
CCTCGTCTCCATCCCGCCGACGCCTATATTGACATGACATCATGCCTAAA
ATGAATGCACCACTTAAGACTAAGCACTCCCTTAATATCTTGTAACTTGC
CAACAATCCCTCAGCCTGGTCGTGATGCCGGCAAGGCCAAGCCCCTGAAG
GCACCGAAGAAAGCCGCCAAAGAACTGACAGAGGAGGATCTGGCTTTCAA
AAACAAGCAGAAGGCAGAGGCTGCTGCCATGAAAAAAGCTGCAGAGGCGT
TGAAGGCAAAGAAAAAGTAAGGCAAGAAGAAGTGCACTCCCGCGATGCCA
TCCAGGCgggtgaggggaagaggcgcaCAGGCTGATTATGGACCTTGGGG
AATAGGGAATAGGAGGATGAAGATCTTCGTATCCATCAAAACATGATGCG
ACGAAATGACAATATTTTGCTCGCTTTTCCTTTGACCGCTATTTTGACCT
CTCTTGCGTTTCCATCCGTCGTGCTGATAATGGTCACCACGAACGTGGTC
TCACGACCTCGACTGCATGTTACGttt
back to top

Coding sequence (CDS) from alignment at CM002455.1:1304312..1305688+

>rna518 ID=rna518|Name=rna518|organism=Nannochloropsis gaditana|type=CDS|length=357bp|location=Sequence derived from alignment at CM002455.1:1304312..1305688+ (Nannochloropsis gaditana)
ATGCTAACTATCTGTGATTTTCCAACACTCCTCAGCAGTAAACAGGGTCT
CACACGTAAAAATACTTTTTCATCATGGTACGTCCGTGTTTCACAGATTT
TTGCAATTATTTCTTTGCCGGTGACCAGTTCAGAGTCTTCCTTAAGGGCC
CCGGCCCATGCTCTCAGCCGGTGTAAGAATGCTTCGAAGGCTTTCGTACA
TCTTAGCACCATGGAATGTCCGGGGCCTTGTTTCCCAGGTTTACTCAAAA
CACGTAGTACTGGGCCTGTTTCATTTCTCGCACCGCACGTCAAGTGCTCT
CTTGTAGCATCCCTTGTGCACTACGCCTCGTCTCCATCCCGCCGACGCCT
ATATTGA
back to top
Synonyms
Publications