rna5179, rna5179 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5179
Unique Name	rna5179
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2327
Alignment location	CM002465.1:335420..337874 +

Link to JBrowse

Properties


Property Name	Value
Product	dihydrolipoamide branched chain transacylase e2
Orig transcript id	gnl\|cribi\|Naga_100032g33.247.mrna
Orig protein id	gnl\|cribi\|Naga_100032g33.247
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:335420..337874 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100032g33	gene4999	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5179	rna5179-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25504.1	cds5167	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:335420..337874+
coding sequence from alignment at CM002465.1:335420..337874+

mRNA sequence

>rna5179 ID=rna5179|Name=rna5179|organism=Nannochloropsis gaditana|type=mRNA|length=2327bp
TGCAGCCTGCTCTTCATAAATTCTGTCAAATGTTCATTTTTTCCAAGTAA
TTGGTGAGATTAAGATATGCTTTACACCTGTGTAAGCCACATTTTCGACA
TAGGTGATGCTATATTTGCTTGTACGGCTGCAGACTGCTTTCTCGGATGC
CGCGGAAATCTCTCACGTGGAAGATACTCCCAGGTCCATGAAAAGGAAAA
GGACTTCATACGCGAACAACAAGTCTATTCAAGCGTTGTCCACGCTTTTC
TTCCTTTCGAGTACTGCGCTTGCTTCGCCATCTCTGGAAGATCCAATTGA
GGTTGAGCACTACACGTCACGTCAACTTAATGAAATTCTGGACCTTCCTA
ATTCATATAGTCGATATATGCCTCCTTGGGTAATTGAAAACTACGATCAA
GCCTTTGCTCAGGCACCTGCTGAACCCTCATGGACAAGTGAGGCGAAACA
AGGCCTTAATAAGCCGGGCTGGACAAAGTATTTACCCGAATACTCCGAAG
CACGATTGGGTGAGCTTAGCCCTCCAGCACTCCATTACACGGCTGACGAC
ATCTATGCTGTCAGCGCATGGATTGAGCAAGCGTGCCCATCCAGTATCTG
CCGCAATGCAGACCGGTCCGCAGCAGACTCTGACGACATAGATAAGGCCT
CAGAGGACAAAAAGATGGTGGCTCTCGCCAGAGCAGCGACCATGGCCTCC
TACCCAAATACTGCACAAAATCTTCAGCAGTTCGGCCGCGATCATTTCTC
ATGGTACTACGTACTCGCGAGAGCAGCGACACAAAATGGCTCCGGGCAAT
TATTAAAGATCAATGCGGATCTCAATGCCGCTCAAAACAACCTCCTACGA
AATGGGGGAGGGACTTGGTCTCGTGATCCGTTGAAGGGGCAAATGGATAC
CCTTAATCAACCCGTCTTTGCTGGAATGCGCGCCGCCACGAATGTACACA
TGCGTGACGAGTTGAATTCCAGGTCCCACGCGATCAATGATGGAATGGGT
ACCGTGGCAGCTTTAAACCCAATCTTCGGAAAAGACTTCCGGTACAGGAG
TTATGGTGTTCGACACCTCCGCGCTCACGAGGCAGCCGACCCAAGACGCG
CTCAAGTAGCCCCTGACTCGTCCAAAGGGCGAATTATTCCGGTTATGACG
TCGGCTCTGGACCAGGAAGGAGGGAAAGAATTGTTTTCCACGTCCTCAGC
CCGTGAAACGGCCGAAGCGAGACGAGCAGATCGCCTTGCTACACGGGAGA
AGAAAAAATCTCAGGCCGCCGCTAAGAAGGGTTTAAAAAAAGGCTTGCGC
AAGTTCAAGCATGTTGGCAAACAGCCAGGTCGACAAGGGAAGCACGGTAA
CGAAAAAGTCCTTAAAAAGCCAGGCATTCCTTTACTCGCCAGGGCAGCCG
CTGCAGCGCTAGCTGCCGGTGCAGCCTTCGCAGCGACTGGGTCGAGCGGG
ATGGCGACAGATTACAAGAATATTGACCGGACTGCACAGTCTGCGCGAGA
GTCGTCGACGTTGTATGGCTCTTGGAATTCCGAGACGGGCAATACCGATA
AAGGTGTCTTCACCCATGTGAAGCAAATCCCTCATTTGAATATACCTGAG
ATCTGGGAGCGCCTGTCAAAGGCGAAGGGAGAAAGACTTGCGCCAGTCAT
GCCACCTGGTCCCATAGTTCATGCACCGCCGGCTCGACAACCGCCAAAAT
TCAGAACCGTCGTTCCCGCCACCTACCACGGGCAAAGCTTTCATCCATCT
CCCCGCCCCATGCCCCTGGTAGTAGGCGAGCATGCCTTCCTCCATCCCAA
GATGGCAGCACATTTCAATCATGCGCCTATGGACTACGAGCATGCGTTGT
GTGACCAAGGACATTGCCCTGGCCGACGAAGAATATTGCGAGGGCTGGAA
GGTGAAGACATAGATGCAACGCTGGTCTCGGAGACACACAGGGACGGCCA
ACTAACGGCCATGCACGAACCCGCCGGACACGAGGCTTCGAAAGCCGACA
TCGAAAATGGGAATCCTTCCTACTTCGAAGGGGATAAAGGTATCTTGTTC
CACCACGACGAGTCTCACGTAACGAAGCTCATTCCAATCGAGCGTCCTGA
TATTTATGAAGGCGAACACAAGCCTACGATTTATAAGCCCTTGCGTCGCG
TATACAGGCAACCCAGTCAGAATACCTTTGTAATATGGGCTCCGCAGAAA
AAACATAATCATCCATGGTTTCAAGGACATTGAGCACGGGCCTCAATTTG
TAAATTAAGGCAAAAAGCATGAAAGGATGAAGTGTGAGGTTCTCATACCC
CCAAAAAATTCTTCGTTTGTCCTTTTT

protein sequence of rna5179

>rna5179-protein ID=rna5179-protein|Name=rna5179|organism=Nannochloropsis gaditana|type=polypeptide|length=650bp
MLGNATKRSLSRVVPTCWLLARPWQVRADRTHPFISARRAYLMPSALFPR
LIVQPGHRAAWSRAVQDGEGYQLADRSRVAKADLLRQTFGRQHAECHVQR
RRLSMSALQEPPYDEVSSGPPSSPAGASAGGGKLVPFLLADIGEGIAEVE
LMQWFVQEGENVKQFDRVCEVQSDKATVEISSRYDGVVRRVLHPVGSVVK
VGSALIDIEVGGQENSSSTATLATAPTMNNADVPSPAEAAEAALVSSPPL
GGSEPLPVQAQASHSSTADLKKGPETTYNSRDMTGEIVPTTPAVRRLAKE
HGVDLSLVRPTGPEGRVLKGDVLDFIAAHQGHVGLPPSFFPASPLPPGVP
ASATGTRPVPGEAASPAASPPSPVPPHPLGSSSFLKPAVLPPFSAAALTE
PKRVPVRGIMRQMVKSMNASLKIPHFGYQDEVCMDKAAGLRASLRPFAEA
QGFKLTYLPIMLKAASLALLRYPLLNASLSADEREIIYHPDHHIGVAMAT
SKGLVVPVLRKVQERSLLEIAGELADFQRKAEGGDQGGGGFKEEDFQGAT
FSMSNIGSMGGTYMDAKIVPPQVAIGAIGRIQTLPRFGPARTVEGSQVSS
EKGLVVLPTKVMAISWAGDHRVVDGATMAKFSNLWKSYLEEPATMLAETR

mRNA from alignment at CM002465.1:335420..337874+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5179 ID=rna5179|Name=rna5179|organism=Nannochloropsis gaditana|type=mRNA|length=2455bp|location=Sequence derived from alignment at CM002465.1:335420..337874+ (Nannochloropsis gaditana)
GGCACAGGAATGCTCGGCAATGCCACGAAGCGGTCTTTGAGCCGCGTGGT
CCCTACATGCTGGCTGCTCGCGCGGCCATGGCAGGTACGCGCTGACAGAA
CACACCCTTTCATTTCAGCGAGGAGGGCTTACCTCATGCCATCTGCCCTT
TTTCCACGCCTAATTGTCCAGCCCGGTCATCGCGCCGCCTGGAGCCGGGC
TGTacaggatggggagggataCCAACTTGCTGACCGATCGCGAGTTGCTA
AGGCGGATTTGCTCAGGCAGACTTTTGGGCGGCAGCATGCTGAGGTACGT
GCACGCACGTAGCACGGGCGGTATGGTAGCACTTTGAGAAACTGATGGAC
GTGCCACACACAACACGCAGTGTCACGTGCAAAGACGAAGGTTATCTATG
AGTGCATTACAGGAGCCACCCTACGATGAGGTCTCGTCCgggccaccttc
ctcccctgccggTGCCTCCGCCGGAGGGGGTAAGCTTGTTCCTTTCTTAT
TGGCCGACATTGGGGAGGGGATCGCGGAGGTAGAGCTGATGCAGTGGTTC
GTtcaagaaggggagaacgTGAAACAATTTGACCGAGTCTGCGAAGTGCA
ATCGGACAAAGCTACCGTAGAAATTTCTTCTCGCTATGACGGTGTGGTCC
GACGCGTGCTGCACCCGGTCGGCTCCGTTGTCAAGGTGGGCAGCGCCTTG
ATCGACATCGAGGTGGGAGGACAAGAGAACtcttccagcaccgccaCGCT
AGCCACAGCGCCCACCATGAATAACGCGGACGTGCCCTCGCccgcggagg
cggccgaagCAGCCCttgtctcctctcctcccttagGTGGGTCCGAGCCA
TTGCCGGTGCAAGCGCAGGCCTCGCACTCGAGTACAGCAGACCTCAAGAA
GGGCCCCGAGACCACCTACAATAGCAGGGACATGACAGGGGAGATCGTAC
CCACCACCCCGGCGGTGCGGCGCCTGGCCAAGGAGCACGGCGTGGATTTG
TCCCTGGTCCGTCCCACGGGACCCGAGGGACGCGTGCTCAAAGGGGACGT
GCTCGACTTTATCGCCGCCCACCAAGGACACGTCGGGCTCCCTCCATCat
tcttccccgcctcccccctcccccccggggTGCCGGCGTCCGCGACAGGG
ACGCGGCCTGTTCCCGGGGAAGCTGCCTCTCCAGctgcctcgcccccctc
ccccgttcccccgCATCCCTTGGGCAGTTCTTCCTTTCTAAAACCggccg
tccttcccccattTTCTGCGGCGGCGCTCACGGAACCGAAGCGAGTTCCT
GTCCGCGGGATTATGCGCCAGATGGTCAAATCCATGAATGCCAGTCTGAA
GATCCCGCATTTCGGCTATCAGGACGAGGTGTGCATGGATAAGGCCGCCG
gcctccgcgcctccctccgcccattCGCCGAGGCTCAAGGCTTCAAACTG
ACTTACTTGCCGATCATGCTCAAAGCGGCGAGCTTGGCACTCCTGCGTTA
TCCCCTCCTAAACGCATCCCTCTCCGCGGACGAGCGCGAGATAATCTACC
ACCCCGACCATCACATCGGCGTGGCCATGGCGACGAGCAAAGGCCTAGTG
GTGCCGGTCTTGCGCAAGGTGCAAGAAAGAAGCCTGCTGGAAATTGCGGG
AGAATTGGCAGACTTTcagagaaaggcggaggggggagaccagggcggcg
gagggttcaaagaggaggatttTCAGGGGGCCACATTTTCTATGAGCAAC
ATCGGGAGCATGGGGGGCACGTATATGGACGCAAAGATTGTTCCGCCGCA
GGTTGCCATTGGAGCCATCGGGCGTATCCAGACGCTGCCCCGATTCGGGC
CGGCAAGGACCGTGGAAGGAAGCCAAGTGAGCTCAGAGAAAGGCCTGGTG
GTGCTTCCTACGAAAGTCATGGCGATATCCTGGGCGGGAGATCACCGCGT
GGTGGACGGGGCAACCATGGCCAAATTCTCGAACCTGTGGAAATCATATT
TGGAGGAGCCCGCCACCATGTTGGCGGAGACGCGGTAGATGGGCGTAAAA
TCGGACTGTGCAGAAGACGGGGCTGTGAAGGGGACTTACATAGGAAAAAC
ATGTCGAAAAGGTGTACAGGATGACACATGCAGCATTTtagggaaaaggg
gaggcacGTGCAGGTCAGAAATTGCGAAAAGTGATCATTCATTGTGACGA
TCAAGTCAGGATTTAGGTCCGATGTGTAGATGACTGTATCATGGCGATGT
AGATTGAGAAATTCATGCTGGTATCAGCacggcaaggaagagaggacgaT
GTGTCTATAAAAGCTCCTTCCTTATACTACTAGCGCGCTTAGAGGAACGA
GGAGTGGAAGTACGGCTAGAGGTCACGGCACGAAAGTCTGGCCGTTATAA
TCCCGTTGTATCGTTGTTAAAGAAACTATAGAAGTAATTTGAGGTGGCAA
TGGTT

Coding sequence (CDS) from alignment at CM002465.1:335420..337874+

>rna5179 ID=rna5179|Name=rna5179|organism=Nannochloropsis gaditana|type=CDS|length=3906bp|location=Sequence derived from alignment at CM002465.1:335420..337874+ (Nannochloropsis gaditana)
ATGCTCGGCAATGCCACGAAGCGGTCTTTGAGCCGCGTGGTCCCTACATG
CTGGCTGCTCGCGCGGCCATGGCAGGTACGCGCTGACAGAACACACCCTT
TCATTTCAGCGAGGAGGGCTTACCTCATGCCATCTGCCCTTTTTCCACGC
CTAATTGTCCAGCCCGGTCATCGCGCCGCCTGGAGCCGGGCTGTacagga
tggggagggataCCAACTTGCTGACCGATCGCGAGTTGCTAAGGCGGATT
TGCTCAGGCAGACTTTTGGGCGGCAGCATGCTGAGTGTCACGTGCAAAGA
CGAAGGTTATCTATGAGTGCATTACAGGAGCCACCCTACGATGAGGTCTC
GTCCgggccaccttcctcccctgccggTGCCTCCGCCGGAGGGGGTAAGC
TTGTTCCTTTCTTATTGGCCGACATTGGGGAGGGGATCGCGGAGGTAGAG
CTGATGCAGTGGTTCGTtcaagaaggggagaacgTGAAACAATTTGACCG
AGTCTGCGAAGTGCAATCGGACAAAGCTACCGTAGAAATTTCTTCTCGCT
ATGACGGTGTGGTCCGACGCGTGCTGCACCCGGTCGGCTCCGTTGTCAAG
GTGGGCAGCGCCTTGATCGACATCGAGGTGGGAGGACAAGAGAACtcttc
cagcaccgccaCGCTAGCCACAGCGCCCACCATGAATAACGCGGACGTGC
CCTCGCccgcggaggcggccgaagCAGCCCttgtctcctctcctccctta
gGTGGGTCCGAGCCATTGCCGGTGCAAGCGCAGGCCTCGCACTCGAGTAC
AGCAGACCTCAAGAAGGGCCCCGAGACCACCTACAATAGCAGGGACATGA
CAGGGGAGATCGTACCCACCACCCCGGCGGTGCGGCGCCTGGCCAAGGAG
CACGGCGTGGATTTGTCCCTGGTCCGTCCCACGGGACCCGAGGGACGCGT
GCTCAAAGGGGACGTGCTCGACTTTATCGCCGCCCACCAAGGACACGTCG
GGCTCCCTCCATCattcttccccgcctcccccctcccccccggggTGCCG
GCGTCCGCGACAGGGACGCGGCCTGTTCCCGGGGAAGCTGCCTCTCCAGc
tgcctcgcccccctcccccgttcccccgCATCCCTTGGGCAGTTCTTCCT
TTCTAAAACCggccgtccttcccccattTTCTGCGGCGGCGCTCACGGAA
CCGAAGCGAGTTCCTGTCCGCGGGATTATGCGCCAGATGGTCAAATCCAT
GAATGCCAGTCTGAAGATCCCGCATTTCGGCTATCAGGACGAGGTGTGCA
TGGATAAGGCCGCCGgcctccgcgcctccctccgcccattCGCCGAGGCT
CAAGGCTTCAAACTGACTTACTTGCCGATCATGCTCAAAGCGGCGAGCTT
GGCACTCCTGCGTTATCCCCTCCTAAACGCATCCCTCTCCGCGGACGAGC
GCGAGATAATCTACCACCCCGACCATCACATCGGCGTGGCCATGGCGACG
AGCAAAGGCCTAGTGGTGCCGGTCTTGCGCAAGGTGCAAGAAAGAAGCCT
GCTGGAAATTGCGGGAGAATTGGCAGACTTTcagagaaaggcggaggggg
gagaccagggcggcggagggttcaaagaggaggatttTCAGGGGGCCACA
TTTTCTATGAGCAACATCGGGAGCATGGGGGGCACGTATATGGACGCAAA
GATTGTTCCGCCGCAGGTTGCCATTGGAGCCATCGGGCGTATCCAGACGC
TGCCCCGATTCGGGCCGGCAAGGACCGTGGAAGGAAGCCAAGTGAGCTCA
GAGAAAGGCCTGGTGGTGCTTCCTACGAAAGTCATGGCGATATCCTGGGC
GGGAGATCACCGCGTGGTGGACGGGGCAACCATGGCCAAATTCTCGAACC
TGTGGAAATCATATTTGGAGGAGCCCGCCACCATGTTGGCGGAGACGCGG
TAGATGCTCGGCAATGCCACGAAGCGGTCTTTGAGCCGCGTGGTCCCTAC
ATGCTGGCTGCTCGCGCGGCCATGGCAGGTACGCGCTGACAGAACACACC
CTTTCATTTCAGCGAGGAGGGCTTACCTCATGCCATCTGCCCTTTTTCCA
CGCCTAATTGTCCAGCCCGGTCATCGCGCCGCCTGGAGCCGGGCTGTaca
ggatggggagggataCCAACTTGCTGACCGATCGCGAGTTGCTAAGGCGG
ATTTGCTCAGGCAGACTTTTGGGCGGCAGCATGCTGAGTGTCACGTGCAA
AGACGAAGGTTATCTATGAGTGCATTACAGGAGCCACCCTACGATGAGGT
CTCGTCCgggccaccttcctcccctgccggTGCCTCCGCCGGAGGGGGTA
AGCTTGTTCCTTTCTTATTGGCCGACATTGGGGAGGGGATCGCGGAGGTA
GAGCTGATGCAGTGGTTCGTtcaagaaggggagaacgTGAAACAATTTGA
CCGAGTCTGCGAAGTGCAATCGGACAAAGCTACCGTAGAAATTTCTTCTC
GCTATGACGGTGTGGTCCGACGCGTGCTGCACCCGGTCGGCTCCGTTGTC
AAGGTGGGCAGCGCCTTGATCGACATCGAGGTGGGAGGACAAGAGAACtc
ttccagcaccgccaCGCTAGCCACAGCGCCCACCATGAATAACGCGGACG
TGCCCTCGCccgcggaggcggccgaagCAGCCCttgtctcctctcctccc
ttagGTGGGTCCGAGCCATTGCCGGTGCAAGCGCAGGCCTCGCACTCGAG
TACAGCAGACCTCAAGAAGGGCCCCGAGACCACCTACAATAGCAGGGACA
TGACAGGGGAGATCGTACCCACCACCCCGGCGGTGCGGCGCCTGGCCAAG
GAGCACGGCGTGGATTTGTCCCTGGTCCGTCCCACGGGACCCGAGGGACG
CGTGCTCAAAGGGGACGTGCTCGACTTTATCGCCGCCCACCAAGGACACG
TCGGGCTCCCTCCATCattcttccccgcctcccccctcccccccggggTG
CCGGCGTCCGCGACAGGGACGCGGCCTGTTCCCGGGGAAGCTGCCTCTCC
AGctgcctcgcccccctcccccgttcccccgCATCCCTTGGGCAGTTCTT
CCTTTCTAAAACCggccgtccttcccccattTTCTGCGGCGGCGCTCACG
GAACCGAAGCGAGTTCCTGTCCGCGGGATTATGCGCCAGATGGTCAAATC
CATGAATGCCAGTCTGAAGATCCCGCATTTCGGCTATCAGGACGAGGTGT
GCATGGATAAGGCCGCCGgcctccgcgcctccctccgcccattCGCCGAG
GCTCAAGGCTTCAAACTGACTTACTTGCCGATCATGCTCAAAGCGGCGAG
CTTGGCACTCCTGCGTTATCCCCTCCTAAACGCATCCCTCTCCGCGGACG
AGCGCGAGATAATCTACCACCCCGACCATCACATCGGCGTGGCCATGGCG
ACGAGCAAAGGCCTAGTGGTGCCGGTCTTGCGCAAGGTGCAAGAAAGAAG
CCTGCTGGAAATTGCGGGAGAATTGGCAGACTTTcagagaaaggcggagg
ggggagaccagggcggcggagggttcaaagaggaggatttTCAGGGGGCC
ACATTTTCTATGAGCAACATCGGGAGCATGGGGGGCACGTATATGGACGC
AAAGATTGTTCCGCCGCAGGTTGCCATTGGAGCCATCGGGCGTATCCAGA
CGCTGCCCCGATTCGGGCCGGCAAGGACCGTGGAAGGAAGCCAAGTGAGC
TCAGAGAAAGGCCTGGTGGTGCTTCCTACGAAAGTCATGGCGATATCCTG
GGCGGGAGATCACCGCGTGGTGGACGGGGCAACCATGGCCAAATTCTCGA
ACCTGTGGAAATCATATTTGGAGGAGCCCGCCACCATGTTGGCGGAGACG
CGGTAG

Synonyms

Publications