rna5178, rna5178 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5178
Unique Name	rna5178
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1817
Alignment location	CM002465.1:332390..334870 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100032g32.243.mrna
Orig protein id	gnl\|cribi\|Naga_100032g32.243
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:332390..334870 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100032g32	gene4998	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5178	rna5178-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25500.1	cds5166	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:332390..334870+
coding sequence from alignment at CM002465.1:332390..334870+

mRNA sequence

>rna5178 ID=rna5178|Name=rna5178|organism=Nannochloropsis gaditana|type=mRNA|length=1817bp
GCAAGTAGGGAACATAACACACTTCGCGCAGGATGCAAGAGCAGATTACA
CGCCACTGGAGAGCAAAGGACCTGCGTGGACGCGTAAGCCGGGGCTAGAC
CCATGAGGCTTCGATTTGAATTCTTTTCCTTAGCGAGCACCCCCTCGAAC
GTGCCAGTCCTGAACATAAAACCTTTGCCGGTGCCGCCTTAATCTTTGGG
GTCATTCTGGTTGTAGACATACCACGAACGCCTGTGTGGCTTTGGTCTCA
CCGTGTTTCTTCTTATCGCGGCAGATCGAGATTCATTGAGGACCAAGACA
CGCTGAGCGCGCTCTCGGACACACAAGGCGCCTTACCCCTCTTGAACCAG
TTCACGTCCGAGTCTCTTTACCTGCCCTCACGCCTCGCTTCTACGAAATT
AATTGACCAAGACGCTGCACAAAAGAGAAGACCCAACAATGCCCCAAGAG
TATGGCACTTTTTTTGCCCCGCCTTCGAAATTGACGTCATGGTTGCGGGC
AAACAAAAGCGAGGATGCCTTGGAAGCTGGGACAGCGCCTGAGGACAAGT
CTAGCGCTCCATCCCCCTGCGGAGCGTTTCCTGGGTCCCCGCTCATGACA
CCAAATGCTCTAGCGCAAACGGGCCCTGCTCCAGCGTCGGTATTACTTTT
TGGATTGTCTGCCAATCCTCCCACGGGCCAAGCAGGACACGCGGGCATTG
TCAGGTTCCTGCGCGAGCAAGATCAGTGGGACGAAATTTGGGTGATGCCT
GTGTACAAGCACATGCACGCCAAAAATCATCAACTGGTAGACTTTGAAGA
CCGGTATCAAATGTGTCGGTTGAACTTCACATGTCCGTCCTCGTACGGAG
CTTCTTCCTACAGCGCGTCCCCCCCGTCTGCGAAAGGGCCTCCGACGACC
CGAACACGAGTGAAGGTGGTGCGGCTGGAGAAGGAAGTGGCAAAGAATTT
TATTGCTGAAGCCGCGGCAAGAGGACAAGGGCCTGAGACAGTTAAAGTGG
GTACCATCGACGTTGTCCTATATGCAAAGGAACGAATGCCGAACACGGAT
TTCAGCCTCGTACTTGGCACCGACACCTTCAACGACATGAAGAGAGGGAA
ATGGAAACGCGGTCGGGAACTTTTGGATCTTGTCTCGGTGGTGGTAATTT
CGCGGCCTGGAGTCCCCTACGCGCCACAAGAGGATGAATTTTTGAACCAT
AACTTGCATTTTTACAATGTGCCATCTTTGGGGGAGGTTTCTTCGACAGC
AGTCAGGAAAACAACCGATTTGCGACTGTTGCGTGAGGTGCTGGAGCCAC
GGGTCCTAGAATACATTCGGGAGAGAGGACTGTACACGATTGGGCGAATA
GAAGGGGGTGGTGGACTTGGGGGAGCCGGACGATCCTCAGTCTCTTCTTT
CTACAGCTACACAAGTGGGAAAAAAGGAAAGGTTTTGGATGATAGGACTC
GTGCGGAGACTGATGAAGGACAAGTACTCCATCGAACAAAAGTCGAGGAA
CCAAGAAGAAGAAGGGTTTGGTGGGCTGTCAGGATAGTGTGGACTGTTCT
AGCTTTGTTGCTGTTCGGTGGCATAATCTTGGGTACTCAACATTTGGGGT
GGCGAAAAACTTGGCATGGGTTTCTGAAAGTCTTGCGTGGAATGCATAGG
ATAGAGAAGGAATGAAGAAAAGAAAAGTTGTTCGCGTATGTCGATGGCGA
ATTTTTATTCGACCGCTATTGAAGAAGTACAAAGAAATATTGAACAGAAA
GTGCACCACGCATGGCGTTGATTGACTGCGCCCTCCATATAGTCATTACT
GTCGTACTCGATCGCGA

protein sequence of rna5178

>rna5178-protein ID=rna5178-protein|Name=rna5178|organism=Nannochloropsis gaditana|type=polypeptide|length=708bp
MLYLLVRLQTAFSDAAEISHVEDTPRSMKRKRTSYANNKSIQALSTLFFL
SSTALASPSLEDPIEVEHYTSRQLNEILDLPNSYSRYMPPWVIENYDQAF
AQAPAEPSWTSEAKQGLNKPGWTKYLPEYSEARLGELSPPALHYTADDIY
AVSAWIEQACPSSICRNADRSAADSDDIDKASEDKKMVALARAATMASYP
NTAQNLQQFGRDHFSWYYVLARAATQNGSGQLLKINADLNAAQNNLLRNG
GGTWSRDPLKGQMDTLNQPVFAGMRAATNVHMRDELNSRSHAINDGMGTV
AALNPIFGKDFRYRSYGVRHLRAHEAADPRRAQVAPDSSKGRIIPVMTSA
LDQEGGKELFSTSSARETAEARRADRLATREKKKSQAAAKKGLKKGLRKF
KHVGKQPGRQGKHGNEKVLKKPGIPLLARAAAAALAAGAAFAATGSSGMA
TDYKNIDRTAQSARESSTLYGSWNSETGNTDKGVFTHVKQIPHLNIPEIW
ERLSKAKGERLAPVMPPGPIVHAPPARQPPKFRTVVPATYHGQSFHPSPR
PMPLVVGEHAFLHPKMAAHFNHAPMDYEHALCDQGHCPGRRRILRGLEGE
DIDATLVSETHRDGQLTAMHEPAGHEASKADIENGNPSYFEGDKGILFHH
DESHVTKLIPIERPDIYEGEHKPTIYKPLRRVYRQPSQNTFVIWAPQKKH
NHPWFQGH

mRNA from alignment at CM002465.1:332390..334870+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5178 ID=rna5178|Name=rna5178|organism=Nannochloropsis gaditana|type=mRNA|length=2481bp|location=Sequence derived from alignment at CM002465.1:332390..334870+ (Nannochloropsis gaditana)
TGCAGCCTGCTCTTCATAAATTCTGTCAAATGTTCATTTTTTCCAAGTAA
TTGGTGAGATTAAGATATGCTTTACACCTGTGTAAGCCACATTTTCGACA
TAGGTGATGCTATATTTGCTTGTACGGCTGCAGACTGCTTTCTCGGATGC
CGCGGAAATCTCTCACGTGGAAGATACTCCCAGGTccatgaaaaggaaaa
ggacttCATACGCGAACAACAAGTCTATTCAAGCGTTGTCCacgcttttc
ttcctttcgaGTACTGCGCTTGCTTCGCCATCTCTGGAAGATCCAATTGA
GGTTGAGCACTACACGTCACGTCAACTTAATGAAATTCTGGACCTTCCTA
ATTCATATAGTCGATATATGCCTCCTTGGGTAATTGAAAACTACGATCAA
GCCTTTGCTCAGGCACCTGCTGAACCCTCATGGACAAGTGAGGCGAAACA
AGGCCTTAATAAGCCGGGCTGGACAAAGTATTTACCCGAATACTCCGAAG
CACGATTGGGTGAGCTTAGCCCTCCAGCACTCCATTACACGGCTGACGAC
ATCTATGCTGTCAGCGCATGGTAAGAAACTCAGGAAACAGAGATAGCCAG
CATTTTGGGGGTCTGGACTTACACGACAAATCCAAATGAGAGCACAATGT
GTCCTGCACGTAGGTGACACAAAGAAAATGTTTCGAGTCTAAACACCCCC
TTCAATTCTTTCATTGTCGCACAGGATTGAGCAAGCGTGCCCATCCAGTA
TCTGCCGCAATGCAGACCGGTCCGCAGCAGACTCTGACGACATAGATAAG
GCCTCAGAGGACAAAAAGATGGTGGCTCTCGCCAGAGCAGCGACCATGGC
CTCCTACCCAAATACTGCACAAAATCTTCAGCAGTTCGGCCGCGATCATT
TCTCATGGTACTACGTACTCGCGAGAGCAGCGACACAAAATGGCTCCGGG
CAATTATTAAAGATCAATGCGGATCTCAATGCCGCTCAAAACAACCTCCT
ACgaaatgggggagggacttGGTCTCGTGATCCGTTGAAGGGGCAAATGG
ATACCCTTAATCAACCCGTCTTTGCTGGAATGCGCGCCGCCACGAATGTA
CACATGCGTGACGAGTTGAATTCCAGGTCCCACGCGATCAATGATGGAAT
GGGTACCGTGGCAGCTTTAAACCCAATCTTCGGAAAAGACTTCCGGTACA
GGAGTTATGGTGTTCGACACCTCCGCGCTCACGAGGCAGCCGACCCAAGA
CGCGCTCAAGTAGCCCCTGACTCGTCCAAAGGGCGAATTATTCCGGTTAT
GACGTCGGCTCTGgaccaggaaggagggaaagaattGTTTTCCACGTCCT
CAGCCCGTGAAACGGCCGAAGCGAGACGAGCAGATCGCCTTGCTACacgg
gagaagaaaaaatctCAGGCCGCCGCTAAGAAGGGTTTAAAAAAAGGCTT
GCGCAAGTTCAAGCATGTTGGCAAACAGCCAGGTCGACAAGGGAAGCACG
GTAACGAAAAAGTCCTTAAAAAGCCAGGCATTCCTTTACTCGCCAGGGCA
GCCGCTGCAGCGCTAGCTGCCGGTGCAGCCTTCGCAGCGACTGGGTCGAG
CGGGATGGCGACAGATTACAAGAATATTGACCGGACTGCACAGTCTGCGC
GAGAGTCGTCGACGTTGTATGGCTCTTGGAATTCCGAGACGGGCAATACC
GATAAAGGTGTCTTCACCCATGTGAAGCAAATCCCTCATTTGAATATACC
TGAGATCTGGGAGCGCCTGTCAAaggcgaagggagaaagactTGCGCCAG
TCATGCCACCTGGTCCCATAGTTCATGCACCGCCGGCTCGACAACCGCCA
AAATTCAGAACCGTCGTTCCCGCCACCTACCACGGGCAAAGCTTTCAtcc
atctccccgccccatGCCCCTGGTAGTAGGCGAGcatgccttcctccatc
ccaagATGGCAGCACATTTCAATCATGCGCCTATGGACTACGAGCATGCG
TTGTGTGACCAAGGACATTGCCCTGGCCGACGAAGAATATTGCGAGGGCT
GGAAGGTGAAGACATAGATGCAACGCTGGTCTCGGAGACACACAGGGACG
GCCAACTAACGGCCATGCACGAACCCGCCGGACACGAGGCTTCGAAAGCC
GACATCGAAAATGGGAATCCTTCCTACTTCGAAGGGGATAAAGGTATCTT
GTTCCACCACGACGAGTCTCACGTAACGAAGCTCATTCCAATCGAGCGTC
CTGATATTTATGAAGGCGAACACAAGCCTACGATTTATAAGCCCTTGCGT
CGCGTATACAGGCAACCCAGTCAGAATACCTTTGTAATATGGGCTCCGCA
GAAAAAACATAATCATCCATGGTTTCAAGGACATTGAGCACGGGCCTCAA
TTTGTAAATTAAGGCAAAAAGCATGAAAGGATGAAGTGTGAGGTTCTCAT
ACCCCCAAAAAATTCTTCGTTTGTCCTTTTT

Coding sequence (CDS) from alignment at CM002465.1:332390..334870+

>rna5178 ID=rna5178|Name=rna5178|organism=Nannochloropsis gaditana|type=CDS|length=4254bp|location=Sequence derived from alignment at CM002465.1:332390..334870+ (Nannochloropsis gaditana)
ATGCTATATTTGCTTGTACGGCTGCAGACTGCTTTCTCGGATGCCGCGGA
AATCTCTCACGTGGAAGATACTCCCAGGTccatgaaaaggaaaaggactt
CATACGCGAACAACAAGTCTATTCAAGCGTTGTCCacgcttttcttcctt
tcgaGTACTGCGCTTGCTTCGCCATCTCTGGAAGATCCAATTGAGGTTGA
GCACTACACGTCACGTCAACTTAATGAAATTCTGGACCTTCCTAATTCAT
ATAGTCGATATATGCCTCCTTGGGTAATTGAAAACTACGATCAAGCCTTT
GCTCAGGCACCTGCTGAACCCTCATGGACAAGTGAGGCGAAACAAGGCCT
TAATAAGCCGGGCTGGACAAAGTATTTACCCGAATACTCCGAAGCACGAT
TGGGTGAGCTTAGCCCTCCAGCACTCCATTACACGGCTGACGACATCTAT
GCTGTCAGCGCATGGATTGAGCAAGCGTGCCCATCCAGTATCTGCCGCAA
TGCAGACCGGTCCGCAGCAGACTCTGACGACATAGATAAGGCCTCAGAGG
ACAAAAAGATGGTGGCTCTCGCCAGAGCAGCGACCATGGCCTCCTACCCA
AATACTGCACAAAATCTTCAGCAGTTCGGCCGCGATCATTTCTCATGGTA
CTACGTACTCGCGAGAGCAGCGACACAAAATGGCTCCGGGCAATTATTAA
AGATCAATGCGGATCTCAATGCCGCTCAAAACAACCTCCTACgaaatggg
ggagggacttGGTCTCGTGATCCGTTGAAGGGGCAAATGGATACCCTTAA
TCAACCCGTCTTTGCTGGAATGCGCGCCGCCACGAATGTACACATGCGTG
ACGAGTTGAATTCCAGGTCCCACGCGATCAATGATGGAATGGGTACCGTG
GCAGCTTTAAACCCAATCTTCGGAAAAGACTTCCGGTACAGGAGTTATGG
TGTTCGACACCTCCGCGCTCACGAGGCAGCCGACCCAAGACGCGCTCAAG
TAGCCCCTGACTCGTCCAAAGGGCGAATTATTCCGGTTATGACGTCGGCT
CTGgaccaggaaggagggaaagaattGTTTTCCACGTCCTCAGCCCGTGA
AACGGCCGAAGCGAGACGAGCAGATCGCCTTGCTACacgggagaagaaaa
aatctCAGGCCGCCGCTAAGAAGGGTTTAAAAAAAGGCTTGCGCAAGTTC
AAGCATGTTGGCAAACAGCCAGGTCGACAAGGGAAGCACGGTAACGAAAA
AGTCCTTAAAAAGCCAGGCATTCCTTTACTCGCCAGGGCAGCCGCTGCAG
CGCTAGCTGCCGGTGCAGCCTTCGCAGCGACTGGGTCGAGCGGGATGGCG
ACAGATTACAAGAATATTGACCGGACTGCACAGTCTGCGCGAGAGTCGTC
GACGTTGTATGGCTCTTGGAATTCCGAGACGGGCAATACCGATAAAGGTG
TCTTCACCCATGTGAAGCAAATCCCTCATTTGAATATACCTGAGATCTGG
GAGCGCCTGTCAAaggcgaagggagaaagactTGCGCCAGTCATGCCACC
TGGTCCCATAGTTCATGCACCGCCGGCTCGACAACCGCCAAAATTCAGAA
CCGTCGTTCCCGCCACCTACCACGGGCAAAGCTTTCAtccatctccccgc
cccatGCCCCTGGTAGTAGGCGAGcatgccttcctccatcccaagATGGC
AGCACATTTCAATCATGCGCCTATGGACTACGAGCATGCGTTGTGTGACC
AAGGACATTGCCCTGGCCGACGAAGAATATTGCGAGGGCTGGAAGGTGAA
GACATAGATGCAACGCTGGTCTCGGAGACACACAGGGACGGCCAACTAAC
GGCCATGCACGAACCCGCCGGACACGAGGCTTCGAAAGCCGACATCGAAA
ATGGGAATCCTTCCTACTTCGAAGGGGATAAAGGTATCTTGTTCCACCAC
GACGAGTCTCACGTAACGAAGCTCATTCCAATCGAGCGTCCTGATATTTA
TGAAGGCGAACACAAGCCTACGATTTATAAGCCCTTGCGTCGCGTATACA
GGCAACCCAGTCAGAATACCTTTGTAATATGGGCTCCGCAGAAAAAACAT
AATCATCCATGGTTTCAAGGACATTGAATGCTATATTTGCTTGTACGGCT
GCAGACTGCTTTCTCGGATGCCGCGGAAATCTCTCACGTGGAAGATACTC
CCAGGTccatgaaaaggaaaaggacttCATACGCGAACAACAAGTCTATT
CAAGCGTTGTCCacgcttttcttcctttcgaGTACTGCGCTTGCTTCGCC
ATCTCTGGAAGATCCAATTGAGGTTGAGCACTACACGTCACGTCAACTTA
ATGAAATTCTGGACCTTCCTAATTCATATAGTCGATATATGCCTCCTTGG
GTAATTGAAAACTACGATCAAGCCTTTGCTCAGGCACCTGCTGAACCCTC
ATGGACAAGTGAGGCGAAACAAGGCCTTAATAAGCCGGGCTGGACAAAGT
ATTTACCCGAATACTCCGAAGCACGATTGGGTGAGCTTAGCCCTCCAGCA
CTCCATTACACGGCTGACGACATCTATGCTGTCAGCGCATGGATTGAGCA
AGCGTGCCCATCCAGTATCTGCCGCAATGCAGACCGGTCCGCAGCAGACT
CTGACGACATAGATAAGGCCTCAGAGGACAAAAAGATGGTGGCTCTCGCC
AGAGCAGCGACCATGGCCTCCTACCCAAATACTGCACAAAATCTTCAGCA
GTTCGGCCGCGATCATTTCTCATGGTACTACGTACTCGCGAGAGCAGCGA
CACAAAATGGCTCCGGGCAATTATTAAAGATCAATGCGGATCTCAATGCC
GCTCAAAACAACCTCCTACgaaatgggggagggacttGGTCTCGTGATCC
GTTGAAGGGGCAAATGGATACCCTTAATCAACCCGTCTTTGCTGGAATGC
GCGCCGCCACGAATGTACACATGCGTGACGAGTTGAATTCCAGGTCCCAC
GCGATCAATGATGGAATGGGTACCGTGGCAGCTTTAAACCCAATCTTCGG
AAAAGACTTCCGGTACAGGAGTTATGGTGTTCGACACCTCCGCGCTCACG
AGGCAGCCGACCCAAGACGCGCTCAAGTAGCCCCTGACTCGTCCAAAGGG
CGAATTATTCCGGTTATGACGTCGGCTCTGgaccaggaaggagggaaaga
attGTTTTCCACGTCCTCAGCCCGTGAAACGGCCGAAGCGAGACGAGCAG
ATCGCCTTGCTACacgggagaagaaaaaatctCAGGCCGCCGCTAAGAAG
GGTTTAAAAAAAGGCTTGCGCAAGTTCAAGCATGTTGGCAAACAGCCAGG
TCGACAAGGGAAGCACGGTAACGAAAAAGTCCTTAAAAAGCCAGGCATTC
CTTTACTCGCCAGGGCAGCCGCTGCAGCGCTAGCTGCCGGTGCAGCCTTC
GCAGCGACTGGGTCGAGCGGGATGGCGACAGATTACAAGAATATTGACCG
GACTGCACAGTCTGCGCGAGAGTCGTCGACGTTGTATGGCTCTTGGAATT
CCGAGACGGGCAATACCGATAAAGGTGTCTTCACCCATGTGAAGCAAATC
CCTCATTTGAATATACCTGAGATCTGGGAGCGCCTGTCAAaggcgaaggg
agaaagactTGCGCCAGTCATGCCACCTGGTCCCATAGTTCATGCACCGC
CGGCTCGACAACCGCCAAAATTCAGAACCGTCGTTCCCGCCACCTACCAC
GGGCAAAGCTTTCAtccatctccccgccccatGCCCCTGGTAGTAGGCGA
GcatgccttcctccatcccaagATGGCAGCACATTTCAATCATGCGCCTA
TGGACTACGAGCATGCGTTGTGTGACCAAGGACATTGCCCTGGCCGACGA
AGAATATTGCGAGGGCTGGAAGGTGAAGACATAGATGCAACGCTGGTCTC
GGAGACACACAGGGACGGCCAACTAACGGCCATGCACGAACCCGCCGGAC
ACGAGGCTTCGAAAGCCGACATCGAAAATGGGAATCCTTCCTACTTCGAA
GGGGATAAAGGTATCTTGTTCCACCACGACGAGTCTCACGTAACGAAGCT
CATTCCAATCGAGCGTCCTGATATTTATGAAGGCGAACACAAGCCTACGA
TTTATAAGCCCTTGCGTCGCGTATACAGGCAACCCAGTCAGAATACCTTT
GTAATATGGGCTCCGCAGAAAAAACATAATCATCCATGGTTTCAAGGACA
TTGA

Synonyms

Publications