rna5177, rna5177 (mRNA) Nannochloropsis gaditana

Overview
Namerna5177
Unique Namerna5177
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length210
Alignment locationCM002465.1:330126..332072 +

Link to JBrowse

Properties
Property NameValue
Productnicotinate-nucleotide adenylyltransferase
Orig transcript idgnl|cribi|Naga_100032g31.238.mrna
Orig protein idgnl|cribi|Naga_100032g31.238
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:330126..332072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g31gene4997Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5177rna5177-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25495.1cds5165Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5177 ID=rna5177|Name=rna5177|organism=Nannochloropsis gaditana|type=mRNA|length=210bp
ATGGGCGATCGGAAAGTAAGAAACCATCACGCAGTGCATCTGGTACGGGT
TTCTATGGAGGAGCTGAGATTCTCGGAGAGGGGACTCAACCATACAATTA
ATATCTCGTCTGTGAAAATGCAAAGGTTTTTGGCAGGTTCGCGTAGGAGT
CAGCAAATGGAGGGATCTTTTGTGGTTTGCGTGTTTACCCGTCGTAAAAA
TGCCAGGTAA
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protein sequence of rna5177

>rna5177-protein ID=rna5177-protein|Name=rna5177|organism=Nannochloropsis gaditana|type=polypeptide|length=408bp
MPQEYGTFFAPPSKLTSWLRANKSEDALEAGTAPEDKSSAPSPCGAFPGS
PLMTPNALAQTGPAPASVLLFGLSANPPTGQAGHAGIVRFLREQDQWDEI
WVMPVYKHMHAKNHQLVDFEDRYQMCRLNFTCPSSYGASSYSASPPSAKG
PPTTRTRVKVVRLEKEVAKNFIAEAAARGQGPETVKVGTIDVVLYAKERM
PNTDFSLVLGTDTFNDMKRGKWKRGRELLDLVSVVVISRPGVPYAPQEDE
FLNHNLHFYNVPSLGEVSSTAVRKTTDLRLLREVLEPRVLEYIRERGLYT
IGRIEGGGGLGGAGRSSVSSFYSYTSGKKGKVLDDRTRAETDEGQVLHRT
KVEEPRRRRVWWAVRIVWTVLALLLFGGIILGTQHLGWRKTWHGFLKVLR
GMHRIEKE
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mRNA from alignment at CM002465.1:330126..332072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5177 ID=rna5177|Name=rna5177|organism=Nannochloropsis gaditana|type=mRNA|length=1947bp|location=Sequence derived from alignment at CM002465.1:330126..332072+ (Nannochloropsis gaditana)
GCAAGTAGGGAACATAACACACTTCGCGCAGGATGCAAGAGCAGATTACA
CGCCACTGGAGAGCAAAGGACCTGCGTGGACGCGTAAGCCGGGGCTAGAC
CCATGAGGCTTCGATTTGAATTCTTTTCCTTAGCGAGCACCCCCTCGAAC
GTGCCAGTCCTGAACATAAAACCTTTGCCGGTGCCGCCTTAATCTTTGGG
GTCATTCTGGTTGTAGACATACCACGAACGCCTGTGTGGCTTTGGTCTCA
CCGTGTTTCTTCTTATCGCGGCAGATCGAGATTCATTGAGGACCAAGACA
CGCTGAGCGCGCTCTCGGACACACAAGGCGCCTTACCCCTCTTGAACCAG
TTCACGTCCGAGTCTCTTTACCTGCCCTCACGCCTCGCTTCTACGAAATT
AATTGACCAAGACGCTGCACAAAAGAGAAGACCCAACAATGCCCCAAGAG
TATGGCACTTTTTTTGCCCCGCCTTCGAAATTGACGTCATGGTTGCGGGC
AAACAAAAGCGAGGATGCCTTGGAAGCTGGGACAGCGCCTGAGGACAAGT
CTAGCGCTCCATCCCCCTGCGGAGCGTTTCCTGGGTCCCCGCTCATGACA
CCAAATGCTCTAGCGCAAACGGGCCCTGCTCCAGCGTCGGTATTACTTTT
TGGATTGTCTGCCAATCCTCCCACGGGCCAAGCAGGACACGCGGGCATTG
TCAGGTTCCTGCGCGAGCAAGATCAGTGGGACGAAATTTGGGTGATGCCT
GTGTACAAGCACATGCACGCCAAAAATCATCAACTGGTAGACTTTGAAGA
CCGGTATCAAATGTGTCGGTTGAACTTCACATGTCCGTCCTCGTACGGAG
CTTCTTCCTACAGCGCGTCCCCCCCGTCTGCGAAAGGGCCTCCGACGACC
CGAACACGAGTGAAGGTGGTGcggctggagaaggaagtggcaAAGAATTT
TATTGCTGAAGCCGCGGcaagaggacaagggcctGAGACAGTTAAAGTGG
GTACCATCGACGTTGTCCTATATGCAAAGGAACGAATGCCGAACACGGAT
TTCAGCCTCGTACTTGGTGAGTGAAAGGGCGTCAACTTGCAAATTGCTGC
TTTTTGCTTTATAATGAATCGATGCTCACATTTCACGCATGTCCTAGCTT
CACACTCACgtcgacctcttcctcctgaacGATCCGACACCCACAGGCAC
CGACACCTTCAACGacatgaagagagggaaatggaAACGCGGTCGGGAAC
TTTTGGATCTTGTCTCGGTGGTGGTAATTTCGCGGCCTGGAGTCCCCTAC
GCGCCACAAGAGGATGAATTTTTGAACCATAACTTGCATTTTTACAATGT
GCCATCTTTGGGGGAGGTTTCTTCGACAGCAGTCAGGAAAACAACCGATT
TGCGACTGTTGCGTGAGGTGCTGGAGCCACGGGTCCTAGAATACATTCGG
GAGAGAGGACTGTACACGATTGGGCGAATAGAAGGGGGTGGTGGACTTGG
GGGAGCCGGACGATCCTCAGTCTCTTCTTTCTACAGCTACACAagtggga
aaaaaggaaaggttTTGGATGATAGGACTCGTGCGGAGACTGATGAAGGA
CAAGTACTCCATCGAACAAAAGTCGAGGaaccaagaagaagaagggttTG
GTGGGCTGTCAGGATAGTGTGGACTGTTCTAGCTTTGTTGCTGTTCGGTG
GCATAATCTTGGGTACTCAACATTTGGGGTGGCGAAAAACTTGGCATGGG
TTTCTGAAAGTCTTGCGTGGAATGCATAGGATAGAGAAGgaatgaagaaa
agaaaagttGTTCGCGTATGTCGATGGCGAATTTTTATTCGACCGCTATT
GAAGAAGTACAAAGAAATATTGAACAGAAAGTGCACCACGCATGGCGTTG
ATTGACTGCGCCCTCCATATAGTCATTACTGTCGTACTCGATCGCGA
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Coding sequence (CDS) from alignment at CM002465.1:330126..332072+

>rna5177 ID=rna5177|Name=rna5177|organism=Nannochloropsis gaditana|type=CDS|length=2454bp|location=Sequence derived from alignment at CM002465.1:330126..332072+ (Nannochloropsis gaditana)
ATGCCCCAAGAGTATGGCACTTTTTTTGCCCCGCCTTCGAAATTGACGTC
ATGGTTGCGGGCAAACAAAAGCGAGGATGCCTTGGAAGCTGGGACAGCGC
CTGAGGACAAGTCTAGCGCTCCATCCCCCTGCGGAGCGTTTCCTGGGTCC
CCGCTCATGACACCAAATGCTCTAGCGCAAACGGGCCCTGCTCCAGCGTC
GGTATTACTTTTTGGATTGTCTGCCAATCCTCCCACGGGCCAAGCAGGAC
ACGCGGGCATTGTCAGGTTCCTGCGCGAGCAAGATCAGTGGGACGAAATT
TGGGTGATGCCTGTGTACAAGCACATGCACGCCAAAAATCATCAACTGGT
AGACTTTGAAGACCGGTATCAAATGTGTCGGTTGAACTTCACATGTCCGT
CCTCGTACGGAGCTTCTTCCTACAGCGCGTCCCCCCCGTCTGCGAAAGGG
CCTCCGACGACCCGAACACGAGTGAAGGTGGTGcggctggagaaggaagt
ggcaAAGAATTTTATTGCTGAAGCCGCGGcaagaggacaagggcctGAGA
CAGTTAAAGTGGGTACCATCGACGTTGTCCTATATGCAAAGGAACGAATG
CCGAACACGGATTTCAGCCTCGTACTTGGCACCGACACCTTCAACGacat
gaagagagggaaatggaAACGCGGTCGGGAACTTTTGGATCTTGTCTCGG
TGGTGGTAATTTCGCGGCCTGGAGTCCCCTACGCGCCACAAGAGGATGAA
TTTTTGAACCATAACTTGCATTTTTACAATGTGCCATCTTTGGGGGAGGT
TTCTTCGACAGCAGTCAGGAAAACAACCGATTTGCGACTGTTGCGTGAGG
TGCTGGAGCCACGGGTCCTAGAATACATTCGGGAGAGAGGACTGTACACG
ATTGGGCGAATAGAAGGGGGTGGTGGACTTGGGGGAGCCGGACGATCCTC
AGTCTCTTCTTTCTACAGCTACACAagtgggaaaaaaggaaaggttTTGG
ATGATAGGACTCGTGCGGAGACTGATGAAGGACAAGTACTCCATCGAACA
AAAGTCGAGGaaccaagaagaagaagggttTGGTGGGCTGTCAGGATAGT
GTGGACTGTTCTAGCTTTGTTGCTGTTCGGTGGCATAATCTTGGGTACTC
AACATTTGGGGTGGCGAAAAACTTGGCATGGGTTTCTGAAAGTCTTGCGT
GGAATGCATAGGATAGAGAAGgaatgaATGCCCCAAGAGTATGGCACTTT
TTTTGCCCCGCCTTCGAAATTGACGTCATGGTTGCGGGCAAACAAAAGCG
AGGATGCCTTGGAAGCTGGGACAGCGCCTGAGGACAAGTCTAGCGCTCCA
TCCCCCTGCGGAGCGTTTCCTGGGTCCCCGCTCATGACACCAAATGCTCT
AGCGCAAACGGGCCCTGCTCCAGCGTCGGTATTACTTTTTGGATTGTCTG
CCAATCCTCCCACGGGCCAAGCAGGACACGCGGGCATTGTCAGGTTCCTG
CGCGAGCAAGATCAGTGGGACGAAATTTGGGTGATGCCTGTGTACAAGCA
CATGCACGCCAAAAATCATCAACTGGTAGACTTTGAAGACCGGTATCAAA
TGTGTCGGTTGAACTTCACATGTCCGTCCTCGTACGGAGCTTCTTCCTAC
AGCGCGTCCCCCCCGTCTGCGAAAGGGCCTCCGACGACCCGAACACGAGT
GAAGGTGGTGcggctggagaaggaagtggcaAAGAATTTTATTGCTGAAG
CCGCGGcaagaggacaagggcctGAGACAGTTAAAGTGGGTACCATCGAC
GTTGTCCTATATGCAAAGGAACGAATGCCGAACACGGATTTCAGCCTCGT
ACTTGGCACCGACACCTTCAACGacatgaagagagggaaatggaAACGCG
GTCGGGAACTTTTGGATCTTGTCTCGGTGGTGGTAATTTCGCGGCCTGGA
GTCCCCTACGCGCCACAAGAGGATGAATTTTTGAACCATAACTTGCATTT
TTACAATGTGCCATCTTTGGGGGAGGTTTCTTCGACAGCAGTCAGGAAAA
CAACCGATTTGCGACTGTTGCGTGAGGTGCTGGAGCCACGGGTCCTAGAA
TACATTCGGGAGAGAGGACTGTACACGATTGGGCGAATAGAAGGGGGTGG
TGGACTTGGGGGAGCCGGACGATCCTCAGTCTCTTCTTTCTACAGCTACA
CAagtgggaaaaaaggaaaggttTTGGATGATAGGACTCGTGCGGAGACT
GATGAAGGACAAGTACTCCATCGAACAAAAGTCGAGGaaccaagaagaag
aagggttTGGTGGGCTGTCAGGATAGTGTGGACTGTTCTAGCTTTGTTGC
TGTTCGGTGGCATAATCTTGGGTACTCAACATTTGGGGTGGCGAAAAACT
TGGCATGGGTTTCTGAAAGTCTTGCGTGGAATGCATAGGATAGAGAAGga
atga
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Synonyms
Publications