rna5176, rna5176 (mRNA) Nannochloropsis gaditana

Overview
Namerna5176
Unique Namerna5176
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4718
Alignment locationCM002465.1:324961..325170 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100032g28.274.mrna
Orig protein idgnl|cribi|Naga_100032g28.274
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:324961..325170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g28gene4996Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5176rna5176-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25531.1cds5164Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5176 ID=rna5176|Name=rna5176|organism=Nannochloropsis gaditana|type=mRNA|length=4718bp
GTGTAATCTGCTCTTGCATCCTGCGCGAAGTGTGTTATGTTCCCTACTTG
CTGGCCCTTAGTTTAAATTTATTTTCTACGGGGCATTCGTTTCGATGGGT
GTCGCTTGCTACGGCACAGGCGAGAGCGCTCGTCAAGGGCGAATTCTCAG
CGCACATAACTCACGCATCCAGCTTTCTTGCACTACAATCGACAAAAGGC
AACCAACAGCAATTAGAGGAGAACCCGTTGTGCTTGCCTGCTTGCAAAAT
GCCGCTTCGTTTGGAGATCAAGAAGAAGCTGACGGCACGATCCGATCGCA
TCAAGTCTGTAGAGCTGCATCCCACTGAGCCATGGGTGCTTTCAGGACTT
TACACGGGCAACGTCTTCATATGGGACTATTCGTCAGGGGCCATGGTGAA
ATCGTTTGAAGTGTGCGACTTGCCAGTGCGCAGCGCAAAGTTCATCGTAC
GAAAATCCTGGTTTATTGCCGCTTCCGACGACATGTTCCTGCGCGTGTAC
AATTACAACACGATGGAGAAAGTGAAGGCGTGGGAGGCTCACATGGACTA
CATCCGCTACGTGGAAGTCCACCCGACGTTGCCCTACGTCTTGTCTGCCT
CGGACGACATGACGATCAAGCTTTTCGACTGGGATCAAAATTGGGACTGT
ACCCAGGTCTTCGAGGGCCACGCCCACTACGTGATGATGGTCAAGTTCAA
CCTCAAGGACACGAATGTTTTCGCCTCTGCCTCTCTGGACCGCACCATTA
AAGTGTGGGGCCTGGGAAGTCACATGCCGCACTTCTCTCTGGAAGGTCAC
GAGAAGGGGGTGAACGCCATTGACTACTACCCGGGGGGCGACAAGCCCTA
TCTCCTCTCCGGGGCCGACGACAACCAAGTACGGATCTGGGATTACCAGA
CTAAGGCCTGCGTGCAGACACTGGAAGGACACTCGCACAACGTGACCGCC
GTGCTCTTCCACCCGCGGCTGCCCATCCTCATCTCCGGGAGCGAGGACGG
GACCGTGCGCATTTGGCATTCCACCACCTACCGGGCGGAGACGACGCTCA
ACTACGGCCTGGAGCGGGTGTGGTCATTGGCGGCCTCCCGCGACTCCAAC
AAGGTCGCGATCGGGTACGACGAGGGGACCATCGTGGTCAAGCTGGGGCA
GGAGGTGCCTGTGGCCTCCATGGACACGAACACGGGCAAGCTGGTCTGGG
CGGTGAACAACGACATGTTCACCTCCTCTGTGAAGGGCCTGACGGGCGCA
GGGGCCATAGGGGAAGAAGAAGGGGAGGGTGCCGGGGCTGTCGTGGCGGC
AGTGGGTGACGGGGAGCGACTGTCAATCATTCCTCGGGACCTGGGCTCCA
CAGAAATTTTCCCGCAGACCCTTGCGCACAATTGTAATGGTCGGTTTGTC
GTGGTGTGTGGGGATGGAGAGTACATTATCTACACGTCTCAGGCCTTGCG
AAACAAAAGTTTTGGGAGTGCACTGGACTTTGTTTGGTCTGCTGTAGGTA
CCGGGGACTACGCCATTCGTGAGAGCATTTCTCGGGTCAAGATATTCCGG
AATTTTGCGGAGAAGAAAGCGATTAAGCCTCCTCTTCCCAGTGCCGAAGG
AATCTTCGGTGGGCACTGTCTTGCTGTCAAAGGGAGCGATTGCGTGGTAT
TCCTCGATTGGGAGGAAGGGGCACTGATTCGGCGCATCGACGTGCTCCCA
CGGGCCATCTACTGGAACGAGACTGGGGAAATTGTTCTTCTCGCTTGCGA
AGATTCTTACTTTGTGCTCCGGTACAACAAGGAAGCGGTGGCAGTGGCCT
TGGCCGCGGGCCAAGTGGGCGAGGAAGGGGTCGAAGAGTCGTTCGAACTT
CTGCACGAGCTGTCCGACAAGGTCCGCACCGGGATGTGGGTCGGGGACTG
CTTCCTCTACACCAACAATACGCAGCGCCTGCAGTACTATGTCGGCGGGC
AGATCATGACCCTTTGTCATCTCGACTCGCCCAAATACATGCTGGGGTAT
TTGGCGAAGGAGAACCGAGTTTACTTGATGGACAAGCAGCTCAATGTCGT
CTCCTACAAGGTGCTGCTAGCCGTGCTCCAATATCAGACCGCCGTTGTGC
GCGAAGACTTTGCGGTGGCAAACACCCTACTCTCTTCCATCCCCGAGGCG
GAATTGAGCAATGTGGCCAGGTTTTTGGAGAGCCAGGGGTACAAGGAAGA
AGCGCTGGTCGTTTCCCGAGACCCAGACCATAAATTTGAGTTGGCTTTGG
ATTTGAAGAAGCTTGAAACGGCTAGGGAACTCCTGGCAGCAATTCGGAAG
GAGGACAAGGACAGCATGGATACGCAGAATAAGTGGCGCAAACTTGGGGA
TTTGGCAATGGTGAAGTCAGACTTTGCCCTGGCAGAGAAATGCGCCTGGG
AAGCGCAGGACTGGAGCGGGTTACTCCTCTTGTACACGTCGTTGGGGAAT
GCCGAAGGACTTCTGAAGCTTGCGCAAGAAGCCACGGCGCAGGGCAAGGG
GAATGTGGGGTTCTTGGCCTTCTTTCTTTTGGGTAAGGTAGAGGAATGCA
TTGAACTGCTCATTAAAACGGACCGGATCCCAGAAGCGGCCTTCATGGCA
CGGAGCTACCTTCCTTCCCACATGTCTCGGGTGGTCACTCTTTGGAAACA
ACATTTGAGCAAGATCTCTCCCACGGCCGCTGAGGCTTTGGCCGACCCTG
CGACCTACCCCGCCCTTTTCCCTGACCTGGACGTCGCCCTTCAGGTGGAG
CAGCTTTTCCTCCAGAATCGATCCACGCCATTGTCGGCCAACGCCTATCC
GACCGCCAAAGGGGACATCGAACTCGACCTCATTGCCATGATCAAGAGCG
GCGGCGCCGCTGCTCTCCCGGTCCCGGCTCCCCTCCCGCCAGCAGAAATC
AAAATTGCTCCTGCTGCCGTCGCTGCTGCTGCCTCTCCGGTCAAGGACGC
TAGCCCTTCCACAAGCCCTTCTCCTCTGGAGCCCTCAGGAGGTCCGTCTC
CCCGGGCCCTGGCTGCAGCGGCAGCGGTCGCCGCCCAGCAGGAGGAAGAG
GAGCGAGCTCTCGCAGCGGCCAGGGAGGTAGAGGAAGAACGGGTCAGGAA
AGAGTCAGAGGCGGCGGAAGCCGCAGCCATTTCGGCGGCAGAAGCAGAAG
CGAGGCGACTGAAGGAAGAAGAGATGGCGGCGGCACAGGCAGAAGCAATG
CGTCTTCAACAAGAAGCAGACGAGGAAGCAGCGACCGCAGCAGCGCAAGC
GGAGGCAGAAAGGGTGGCGGAAGAGAAACGCTTGGAACGTGAAGCAGCAG
AGTTATTAGCAGCAGAAGCAGCAGCGGCGGAGGCAGAAATGGCTGCTGCC
GCAGCAAGAAGGGAAGCTGAAGAGGAGGAAGAGCGCGTGCGGCGCCTACA
AGAAGCTGAAGAGGAGTCAGTAGCAAAGGCCAGGGCAGCCGCAGAAGAGG
AGGCCAAGTTGAAGGCGGAGACGGAGGCGATTTTGGGGGACGAAGACGAT
TGGTAGGAGAAGGGAGAGACGCAAGAAGAAGCGGCCATGGAAATGTGAAG
GTTGAAAGTGCATACGGGTGCGTTTCTTTTAACTTGGGTCTTTTTTCAGT
CTTTTGCCGGAGAAGTGAAGACACTGTGAGATCTGCGACGCAGAACAGGC
ATTCGAGCGTCTAGGCATGCTAGATAGTCAGGAGGGTATGGTGGAGGTGC
CTAGACTGGATAGATGATTTCCGGAACCCTACACCTAACCCAAACCGAAA
TCAATTCTAAAGAAGGGGCTTGCAAACCCCCATTGATTCGGTGTCGACAT
CAGCTTGTCATGCTATGGTTAGATCTAGTTGTTTAACGTATTCTTCGTAA
CTGGAAGGCGCTCAGGAAGGGCGAAGTGAAAGCGCCAAATTTGCAAGCTC
TAGGTGCGGACTCGGGTCGGCCTTCGCCAAAGTAACCACGCTCCCTTCTC
AAAACTCTGTTAAATCGAGGTCCAAAGAGACGGAGGACAAGTTGACAGCA
TGATGTCCCACATTATTCGTTGGATGAGAGGCCAGAACTGATATTGGTCA
GCGATCAAACAGAAGATGAAGCTAAGCACCAAAATACAACGATGATGAGT
CAAGTTCAGCAAAAAGACGTACTCACCCCCTCAATCTCCGCATTCTTCGA
TTCTTTTACCTGGCATTTTTACGACGGGTAAACACGCAAACCACAAAAGA
TCCCTCCATTTGCTGACTCCTACGCGAACCTGCCAAAAACCTTTGCATTT
TCACAGACGAGATATTAATTGTATGGTTGAGTCCCCTCTCCGAGAATCTC
AGCTCCTCCATAGAAACCCGTACCAGATGCACTGCGTGATGGTTTCTTAC
TTTCCGATCGCCCATCTTAGCTACGACATCCTCGCCAGTCTCAACGCTTC
ATTCCGCCTTAAAAGCCACAGTGCCCACAACCCTGCATGAGGAGACCTCT
CTGAGGGGCACAGCATGGCAAAGGGATGTAATTTTGGCTCCATCGGCTGT
TTGTGAGGAGGCAGTGGTCCCGCGCACCATATTATCCACGGCTTCTCCCA
CTGCTTCTCCCACTGCTTCTCCCACTGCTTCCCCTACGTTCTCTTCTATA
TCTTCTTCCTTCCCCTACACTGCCTGCGTGACTTCCTAGACCCCCACGCC
TCCTTCAAGAAGTCCCACTGCAAGGCCAAAAGGGAAAGACCAAAATGCGC
AAAACAAATTATGACGTC
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protein sequence of rna5176

>rna5176-protein ID=rna5176-protein|Name=rna5176|organism=Nannochloropsis gaditana|type=polypeptide|length=69bp
MGDRKVRNHHAVHLVRVSMEELRFSERGLNHTINISSVKMQRFLAGSRRS
QQMEGSFVVCVFTRRKNAR
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mRNA from alignment at CM002465.1:324961..325170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5176 ID=rna5176|Name=rna5176|organism=Nannochloropsis gaditana|type=mRNA|length=210bp|location=Sequence derived from alignment at CM002465.1:324961..325170+ (Nannochloropsis gaditana)
ATGGGCGATCGGAAAGTAAGAAACCATCACGCAGTGCATCTGGTACGGGT
TTCTATGGAGGAGCTGAGATTCTCGGAGAGGGGACTCAACCATACAATTA
ATATCTCGTCTGTGAAAATGCAAAGGTTTTTGGCAGGTTCGCGTAGGAGT
CAGCAAATGGAGGGATCTTTTGTGGTTTGCGTGTTTACCCGTCGTAAAAA
TGCCAGGTAA
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Coding sequence (CDS) from alignment at CM002465.1:324961..325170+

>rna5176 ID=rna5176|Name=rna5176|organism=Nannochloropsis gaditana|type=CDS|length=210bp|location=Sequence derived from alignment at CM002465.1:324961..325170+ (Nannochloropsis gaditana)
ATGGGCGATCGGAAAGTAAGAAACCATCACGCAGTGCATCTGGTACGGGT
TTCTATGGAGGAGCTGAGATTCTCGGAGAGGGGACTCAACCATACAATTA
ATATCTCGTCTGTGAAAATGCAAAGGTTTTTGGCAGGTTCGCGTAGGAGT
CAGCAAATGGAGGGATCTTTTGTGGTTTGCGTGTTTACCCGTCGTAAAAA
TGCCAGGTAA
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Synonyms
Publications