rna5174, rna5174 (mRNA) Nannochloropsis gaditana

Overview
Namerna5174
Unique Namerna5174
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length600
Alignment locationCM002465.1:324528..324927 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100032g27.255.mrna
Orig protein idgnl|cribi|Naga_100032g27.255
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:324528..324927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g27gene4994Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5174rna5174-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25512.1cds5162Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5174 ID=rna5174|Name=rna5174|organism=Nannochloropsis gaditana|type=mRNA|length=600bp
ATGTACGTTCCGGACATTTTCGGCAAGACTCCTCAAGCCTTTCAAGTTTG
TGATAAACTTGCCGCCGCAGGCTTCTGGGTTGCATTCCCTGATGTTTTCC
GCGGAAAAGCTTGGCCCCTGGAGAAGTTTCCTCCCCCCGACCGACAGGAG
CTCATGGAATGGATTGGCGGTTATCCTTTCGAGGGTCGAGTGAAACCTGA
CATTGCATGTGCTCTGGCCTTGCTCCGAGAGAACGGTGTGGAAAGGTTTG
GTATTGTTGGCTTCTGCTGGGGCGGTAAGATGTCCACGTTGAGCAGCCAA
GACGCTGAAGTCTTTCGAGCCACTGCATCTGCCCATCCGAGCTTTGTCAC
GGTTGAGGATGCAGCTCTGGTCAATTGCCCGATCCTGCTCCTCCCGTCCA
AAGATGAAGCGGATTTGACGCCTTTCATTGATGCGGTCAAAGCGCGCGGA
GTAGAGGCATCGCAGGAGAAATTTGATGACATGCACCACGGTTGGGTAGC
CGCGCGGGGTGACTGGAAGGATCCGAAGCAGCAAGCACGAGCGACGGAGG
CGATCCAGCTTTTCGTCTCGTTCTTCACCAAGCACTTGAAGGGCGAGTGA
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protein sequence of rna5174

>rna5174-protein ID=rna5174-protein|Name=rna5174|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MEEVCRIQRRHNLFCAFWSFPFGLAGKEEDIEENVGEAVGEAVGEAVGEA
VDNMVRGTTASSQTADGAKITSLCHAVPLREVSSCRVVGTVAFKAE
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mRNA from alignment at CM002465.1:324528..324927+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5174 ID=rna5174|Name=rna5174|organism=Nannochloropsis gaditana|type=mRNA|length=400bp|location=Sequence derived from alignment at CM002465.1:324528..324927+ (Nannochloropsis gaditana)
ATGGAAGAAGTTTGTCGAATAGTAATTTCGAGAGCAAGCAATACGGATCC
GAGTAATCTAGAAATATAACAGGCAGCAAAGACGTCATAATTTGTTTTGC
GCATTTTGGTCTTTCCCTTTTGGCCTTGCAGTGGGACTTCTTgaaggagg
cgtgggggTCTAGGAAGTCACGCAGGCAGTgtaggggaaggaagaagata
tAGAAGAGAACGTAGGGGAAGCAGTGGGAGAAGCAGTGGGAGAAGCAGTG
GGAGAAGCCGTGGATAATATGGTGCGCGGGaccactgcctcctcacAAAC
AGCCGATGGAGCCAAAATTACATCCCTTTGCCATGCTGTGCCCCTCAGAG
AGGTCTCCTCATGCAGGGTTGTGGGCACTGTGGCTTTTAAGGCGGAATGA
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Coding sequence (CDS) from alignment at CM002465.1:324528..324927+

>rna5174 ID=rna5174|Name=rna5174|organism=Nannochloropsis gaditana|type=CDS|length=873bp|location=Sequence derived from alignment at CM002465.1:324528..324927+ (Nannochloropsis gaditana)
ATGGAAGAAGTTTGTCGAATACAAAGACGTCATAATTTGTTTTGCGCATT
TTGGTCTTTCCCTTTTGGCCTTGCAgggaaggaagaagatatAGAAGAGA
ACGTAGGGGAAGCAGTGGGAGAAGCAGTGGGAGAAGCAGTGGGAGAAGCC
GTGGATAATATGGTGCGCGGGaccactgcctcctcacAAACAGCCGATGG
AGCCAAAATTACATCCCTTTGCCATGCTGTGCCCCTCAGAGAGGTCTCCT
CATGCAGGGTTGTGGGCACTGTGGCTTTTAAGGCGGAATGAATGGAAGAA
GTTTGTCGAATACAAAGACGTCATAATTTGTTTTGCGCATTTTGGTCTTT
CCCTTTTGGCCTTGCAgggaaggaagaagatatAGAAGAGAACGTAGGGG
AAGCAGTGGGAGAAGCAGTGGGAGAAGCAGTGGGAGAAGCCGTGGATAAT
ATGGTGCGCGGGaccactgcctcctcacAAACAGCCGATGGAGCCAAAAT
TACATCCCTTTGCCATGCTGTGCCCCTCAGAGAGGTCTCCTCATGCAGGG
TTGTGGGCACTGTGGCTTTTAAGGCGGAATGAATGGAAGAAGTTTGTCGA
ATACAAAGACGTCATAATTTGTTTTGCGCATTTTGGTCTTTCCCTTTTGG
CCTTGCAgggaaggaagaagatatAGAAGAGAACGTAGGGGAAGCAGTGG
GAGAAGCAGTGGGAGAAGCAGTGGGAGAAGCCGTGGATAATATGGTGCGC
GGGaccactgcctcctcacAAACAGCCGATGGAGCCAAAATTACATCCCT
TTGCCATGCTGTGCCCCTCAGAGAGGTCTCCTCATGCAGGGTTGTGGGCA
CTGTGGCTTTTAAGGCGGAATGA
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Synonyms
Publications