rna5172, rna5172 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5172
Unique Name	rna5172
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3333
Alignment location	CM002465.1:323351..323829 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100032g25.251.mrna
Orig protein id	gnl\|cribi\|Naga_100032g25.251
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:323351..323829 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100032g25	gene4992	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5172	rna5172-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25508.1	cds5160	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:323351..323829+
coding sequence from alignment at CM002465.1:323351..323829+

mRNA sequence

>rna5172 ID=rna5172|Name=rna5172|organism=Nannochloropsis gaditana|type=mRNA|length=3333bp
CCCCAGTTTTCCAAGACGCGGACGTACCCTCTAGAAATGGTCGGGCTTAT
TTTTTTAATCAGGACGTCGGGGAATCTTGTCCGCATCTCTCGTGTCTCGG
GTGAACTTCACGCGGCCCATCCCACCGGCGTTGCTTAGTCAAAATTTCCA
CAGTGCACACCTGTGCGGTACACGTACACAATGTCATTTCTATCTGTTCA
ATATAGTATCCGACATGGGGCCCATCTTGGTAGGGCGTTGCCTTCTTCTA
TGTCTACTTGTGGCATGCTGGCTTCGTCTGGTTGAACCGTCTGATGGTGC
CGGCGCCCGACGATCTCAAGGCCTGGGCGCAGCTTTGGGAGGGAAATATC
AGCGTCTTGAAACGATGTTGGGGACTTTTGCGACTTCCACTGCAATTCAG
CGTGCGGCTCGCCGTCGCGGTCGACTTGCAACCGCTATCAACGACAGAAA
GCACGTGTCTGCGGAAGCGAAAGCCTCGTCTGACATATTCGTGAACATAA
CCGATGGGAGGAATGCTTTTCAACGCGGCATGCTGCAGACTAAGCGACAA
AGAAGGTGGATTAGCAAGAGAAAGCTGAGGAAGATGCTCAAAGAGTGTGA
GGCCAGTCTACAGGAAAGCCAGGAAGCCTTGGATGCGCCGAATGACTTAT
TCGTTCAGATGGCGCAAACCTGCTCTCTGGAAATGGCTGCGGGTCGATAT
TTCCTTCGCACGCCAGACATGGATGTTGACACCTATGTTTTCTCCGAAAT
GCCCTACCGGTATGCATCTGTCTTGCCGACAAGTTATTTTGTTGGATATC
TGTTCGACGAAATCTTTGCGGCCGAGAAACCGAACGCTGGATTCACCTTC
AATGTGTTCCAAAACCAATCGGAGGCTACATTTGAGGGGCCGCTCATATC
CATGGTACTGTCTTCGCAGCAAATGAGTCTCCAAGACGACAACTCGACCC
TTGTCATCTACGAACTCACGCAGTCAGCTGAGCAGGCTGAGGCTACCCCC
CTCTCAAATTTCTTCCCTGGCGTCGATCCCAATGGAAATGCATCCCTGAC
GTTTGACCATTGCTCCTTCTTCATAGATCCAGCGAGGGAGCGAAGCGATT
CGGAGGTGACGGTGGACGCTTTCGTCGCGCCCCTTATTTCCGCCCCAGGA
GCAGCACAACGAGTAGATCGGTCCGCTTCTATTGTCGAAAAGGGCCCTCC
CGGCAATAACAAGGCTCCAGGAGGTAATGCAGAACCTGCCCTGAGAAAGT
ATGCAAGAGTATGGAGGGTCAAAGATGCCGAGGGCAAGAAGACAGGAGGA
GTAGAATCGAAGGATTACCTAAAGGGTGCAGCGGACCTGGCAAGATCGAC
TGCCAGTTTCGTGGAGAAATGCAAAACAAAATCTAATGGATGTGACGGGA
ACGACATCGTGTCAGGCATGTCGAGCATGATGCTGTCATTCTCCTTTGTG
GTTGGGGCCGCTTTCCCTCCTGTGGGTATAGCGTTGACTGTGGTGGGGTC
ACTCGGCCTCCTAATATCTGCCCTCACGCTGGACTCGAGTTTCGTGAGCG
AGGTGGACATGACCATTCGTCCATCCACAATCCAGGCAGCCGTTAACAAA
GCCCTGATAAGCTTCACAGCATCTTTAGACACTGAGGTGCTCAATTCATT
CAAAGATTTCTTGCAGCTGGACATTGACAGCTACATCAGGCGCATAGGCG
GCATCGGATACATCGCCCAGCAAAAGGGGGCTGCAGGCCAGGCCTTCATT
GACGAGCAGATCGACTACTGGTACACGCAGGAATTTTCTCTAGCCTGGGG
CGGCACGTATCAGCCGGCGCTGGTGCAAATCGATGCGAAGTACTCTACCT
GGTTCGGCTCCAACGAAAATGGACTGCGGACCAATGTCAATAAGTGGGTC
ACCGAGTGTGATAACGTGTGCAACGTCATGAAAGCTGGTCTCATTGCCGA
TGGGAACAACCTTCTTGATCAGTGCAAGACCAAAGTAGATGATGCTAGGC
CCAACTGGCGGAATTTGAACTCTTTCGCGAATGCCTACCTGGAAATGGCG
ACAAAGTTGATGAGTTACGCATCGCAAAGCGTGGTGATCATGCAGACATA
CTCGTACTGCGATCCTGAGAAGTTTGACCAAGGGGAAATTAATGAGAAAT
GCAAATGGAACAGCGCGATAGACAACCTCTTGTCGAAAGTATTTGCGACT
CAAAGCCGCGCACTTTTTCTCTCCACAGCCATGGAAAGGCTCAACACGGA
ATGCAGTCCCACGTTGCATGGATGGCCATTCTCGCAAAGCTGTTCTGAGA
GTAGCTGCAACTACAAGTGGGGCTTGACGCTGCCCACTTCGGACTGGGAG
AAAAGGCTTGGGAGCGCAGATCAGCAAGGCAAATTCGTGAAGCTAGACAA
GTCTTTCTCCCGAGATAATTCAGCAATCACGTGTCAAAATGATTACAACA
AATGGCATGAATCCCTAGGTTTTGCGTACGGAGGCCTATATGGGTACACA
TCTGATTTTTACAAAGAACCTGACTATCCCTTCGCCCTTCGTCGAGGTAA
TTGCGGGGACAACGCGAAGTGGGCAAACACGGACCTTACATTCGGGACCC
TGACGTTCGGGGCCATTCCTAATTTCTGCCTGAACGAGGACTTTCCCAAG
TGCATGGCACTGGTGGGTGACGACAGTCTTTGGGGTACAGATCAATCATT
GTCTGACGCACCCTTAATCGAGTATCCGGCAAATTTACGGTGCAAAGGGA
ATTCTATGACTTTGCATTCTGGCACGAGTAGAGACGAGTGTTGGCGGAAA
TGCTACGACGAAGGGAAAATGGAACCCATCTTCTTCTTCACGTGGGACGC
GGGAGCTAGTGGCACTCAATGCCGCTGCTATTCTACATGTGATATAGAAT
ATTCGAAATTTGAACAGCTGTATGCAGCCCTACTGCCGCCTCCTTAAGAA
TGAGAAAAGAGCAAGTTGCCCCTAATTAAAAAAAGACTCGGCAAAAACCA
TGTAAATTTTGTCCGACGAGCTTCAAATTTAAGGCTAAGTATGCGACTGG
GAGGGTACAGCTTGCGCTGAGCAACTACAGGCCTTCAGTTTGCTCAAAAC
ATCTCAAATCTTACCACATCAAATTGTTTAGAATCGCACTTTCTTGTAAT
GTTCGATCCCCTAGAAGAGATGGGGACAAAAACGCCAAAATGCCATGAGA
AACTGAAAACAGAGAAATACAAGCTGAAAGGAAACTAGGAGGGGTATGGA
AAACTAAAGAGGAGGCGTACAAAGTGTGACGTACCAAATTCTTTCTTATG
CCTCGCGAAAGCTCACAAATCACGGTCCACACT

protein sequence of rna5172

>rna5172-protein ID=rna5172-protein|Name=rna5172|organism=Nannochloropsis gaditana|type=polypeptide|length=134bp
MRFDGLCEVHALVKERVSNVLWLLSSPPSPLYLLVNLCAIQFPVLCPVGG
RTGSRSIAGNALEEATVRTHDIEGTSTHSIARPFALFSSQRHHFAPHAAQ
AAQTHYGLQCMHDHSTGGGFIHSNRSNHHHHGWA

mRNA from alignment at CM002465.1:323351..323829+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5172 ID=rna5172|Name=rna5172|organism=Nannochloropsis gaditana|type=mRNA|length=479bp|location=Sequence derived from alignment at CM002465.1:323351..323829+ (Nannochloropsis gaditana)
ATGAGATTTGACGGGCTCTGTGAGGTCCATGCACTTGTGAAGGAACGCGT
GTCAAACGTGCTTTGGCTTttatcttctcctccctctccgctttATCTGC
TTGTCAACCTCTGCGCGATTCAATTCCCTGTGTTGTGCCCTGTGGGAGGT
AGAACGGGCAGCCGTAGCATCGCAGGAAAGTTAGCTTGACCAAGCATTGG
CCAGACCAATAGTCTGGTCGTTTCTTTTTGGCTTGCCGGTCCATTGCTTC
AAGCGCTTTGGAAGAAGCGACTGTTCGTACGCATGATATCGAGGGCACAA
GTACTCACTCCATAGCGAGACCTTTCGCATTATTTTCCTCCCAACGTCAT
CACTTTGCTCCACACGCAGCACAAGCCGCTCAAACGCACTATGGCCTGCA
ATGCATGCATGACCATTCCACCGGTGGAGGATTCATACATTCCAATCGGT
CaaaccatcaccaccacggaTGGGCTTGA

Coding sequence (CDS) from alignment at CM002465.1:323351..323829+

>rna5172 ID=rna5172|Name=rna5172|organism=Nannochloropsis gaditana|type=CDS|length=810bp|location=Sequence derived from alignment at CM002465.1:323351..323829+ (Nannochloropsis gaditana)
ATGAGATTTGACGGGCTCTGTGAGGTCCATGCACTTGTGAAGGAACGCGT
GTCAAACGTGCTTTGGCTTttatcttctcctccctctccgctttATCTGC
TTGTCAACCTCTGCGCGATTCAATTCCCTGTGTTGTGCCCTGTGGGAGGT
AGAACGGGCAGCCGTAGCATCGCAGGAAACGCTTTGGAAGAAGCGACTGT
TCGTACGCATGATATCGAGGGCACAAGTACTCACTCCATAGCGAGACCTT
TCGCATTATTTTCCTCCCAACGTCATCACTTTGCTCCACACGCAGCACAA
GCCGCTCAAACGCACTATGGCCTGCAATGCATGCATGACCATTCCACCGG
TGGAGGATTCATACATTCCAATCGGTCaaaccatcaccaccacggaTGGG
CTTGAATGAGATTTGACGGGCTCTGTGAGGTCCATGCACTTGTGAAGGAA
CGCGTGTCAAACGTGCTTTGGCTTttatcttctcctccctctccgctttA
TCTGCTTGTCAACCTCTGCGCGATTCAATTCCCTGTGTTGTGCCCTGTGG
GAGGTAGAACGGGCAGCCGTAGCATCGCAGGAAACGCTTTGGAAGAAGCG
ACTGTTCGTACGCATGATATCGAGGGCACAAGTACTCACTCCATAGCGAG
ACCTTTCGCATTATTTTCCTCCCAACGTCATCACTTTGCTCCACACGCAG
CACAAGCCGCTCAAACGCACTATGGCCTGCAATGCATGCATGACCATTCC
ACCGGTGGAGGATTCATACATTCCAATCGGTCaaaccatcaccaccacgg
aTGGGCTTGA

Synonyms

Publications