rna5170, rna5170 (mRNA) Nannochloropsis gaditana

Overview
Namerna5170
Unique Namerna5170
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1972
Alignment locationCM002465.1:316913..319083 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100032g23.266.mrna
Orig protein idgnl|cribi|Naga_100032g23.266
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:316913..319083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g23gene4990Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25523.1cds5158Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5170rna5170-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5170 ID=rna5170|Name=rna5170|organism=Nannochloropsis gaditana|type=mRNA|length=1972bp
TGTCGGTTTAAAATTCCAGTCCCCAGGCCCAGATCTTGCCCAACGTGTCC
ATAACCAGCAGGGGTGGCCAGGTCGAAGACTTACCGATGTCTCACTTTTA
AAACGATATTTTCTCCCACATCAACTCTATTTTGACTGGGGTGATTTACT
TGACTACTTTCAAGGCTCTCAAAGTGTGCTAAGGGCAATTACGTCCACAG
CCACTCCTATTTAAATTCCTCTTAGTCTATTACAAGCGACCACATGGCCC
ATGAGGCGACTTCACTTCATCTTGACAAGATTCCTGTCGGTAGAACTGAG
CCCTCCGCGGCAATGTCAGCTCCTTTGAGCACTTCCATGAAAGAAATGGG
TCTCGTACCAGATGCACTGCGTGATGGTGCTCAGCCTACATTGGAATCGC
CCATCTTAGCTACGGCATCCTCGCCAGTCTCAACGCGTCATTCTGCCTTA
AAAGCCACAGTGCCCACAACCCTGCGTGCTGAGAACTCTCTGAGGGGCAC
AGCATCGCAAAGGGATGTAATTTCGGCTCCATCGGCTGTTGGTGAGGAGG
CAATGGTCCCGCGCACCATTTCACCCACGGCTTCTCCCACTGCTTCTCCC
ACTGCTGCCCCTACATCCTCTCCTTCTGCCTCTCCCACGTCTTCTCCCAC
TTCTGTAGGCAATGGCGACAGTGAGATGGATATTTCCATCGAGTCCACTG
TAGAGGAGCCTGAAACAACACTAGCGCCGTCCATGGTACCCACGCCTACC
GCCAGGCCCCAGGTTGATACGGCCTCCCCCTCATCCTCCCCTACATCCAT
GCCCACGTCTTCCCATACATCCATGCCCACGTCCTCTTCTACTGCCTTAC
CGACTTCCTCGACCCCCGGACCCTCCCTGGCAAGCCCCACTGCAGGGGCG
GAGGGGGAAGACCTGGACGCTCAAAACAACGAAAACAATTCATCTCCGGA
TACCTCTGGCTCAAATGAAAATACTGAGAGTACTGACGGTGCGAATGACA
GCGGGAGCGAAGGCAGTGGCGACGGAGAGATGGACATGCCCGTCGAGTCC
ACTGTTGGAGAGCCTGGAACAACACTAGCACCGTCCATCGGACCCACTAC
TACTACCAGGCCCCAGATCGATACGACGAGCGAAATTACTGGCCCCATCC
CCGTCACCACCATAATGCTCGAGCTAGCAGGGTCGGCTTCACAGAGATTA
GAGGCAGTCACAAAGATCGTCGGGGAAATAGAGCGGACGCTACTTATTAA
GGCCACGTTTACTACGACCCGGCGCACACTGGCGAGCACTTCTCTTCGGG
CCTCTATCTCTTTACTTTCGTTTCATGTTAAACCCTACACAACGTCTTTG
ACCGGCGGTCGTAGCCTGCAGGCGGCAGGGGAGCTTTGTCAAAATGCAGA
CATGCCCCGCAGCAAAGCAAATATCACACTAGACAACTACGATGATACGA
CGGCAGTGAATTTTCTGGTAGAAAATATTGTAGACGGAACTCAACCTTTA
AACCTTCAAGATGGTACGGCTGTCCGCGATACCGTATGTAATGAGGATAT
AGTAGTGAGAATGTTCGACCCGATGGCCATACTCAGCAACAACACGAAAG
CAAACGGAGGAAAATTTATTTCAGCGGAGGCCATCATAGCACTAGCAGTG
ATATTTCCAGCTGTGGTGCTTCTTTTGATCATTTTAGCGTATCGGCGTCG
CTCAATTGTGCGAACCTCTCATGTCTGAATGATCCATAAGATGTATGACA
CAATACTTTTGCCTCGGTAGCTAAAAATGATGGACGAACATCAGCTGAAA
TTACGCGAAACATATCTTATCATAGACTTTCGACACTTATACGTCGACAG
GGGCGTAAAGACGCTTGTCAGCCGCAACCCTTTACCATGGCAAAAAAGAA
GTTCAAATTATTGACATGCTATTTCTTGGGCGCATTATGTTATAAAGGGA
AAAATAATGATGTTTCGTTCTC
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protein sequence of rna5170

>rna5170-protein ID=rna5170-protein|Name=rna5170|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MPVFHELFLEWVELPTQQTTNGSLTAEVDFGDWLLAKGSNCTETITKIVQ
PLIFTHVTTMIWQHYAVGFLETHEQNLGFWNRFAPLRRVLPPGWLRQWTP
GRKRNENDIPLDAKRRND
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mRNA from alignment at CM002465.1:316913..319083-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5170 ID=rna5170|Name=rna5170|organism=Nannochloropsis gaditana|type=mRNA|length=2171bp|location=Sequence derived from alignment at CM002465.1:316913..319083- (Nannochloropsis gaditana)
GCGCAGAAGCTGGGGTGTAACTTGTTATTTAAAGCAGGTAAGCAAAATAT
GGCGAAAGTTTAGATCTCTAGTTTGTAAAAGATACTGTGCAGTCCTATTC
AACATGAATTGAAAAGTACTGTGTGTTGTAATGCCTGTGTCGCCAAGCTT
CTTTCAAAATGAACACAAAATGCTAGCACCAGCATTTAGACAGCTTCGAA
GTATTGTTTGAAAAGTTCATTTGCACTCAGCACTATCATTTATAATTCTC
AAGATCTTTCATCTACGGATTGCTATAATACTGATTAGATCAGATATCTC
ACGGTGAGCAGTACGACAAGCGTAACACTGACAAGCGCAACGGGGGAGTT
AGCACACAAGAAATACGAATCTGCTCTCTGCTCTTCACTGTCTCATGCCT
TTGATATCGAGAATCCACCGGCGTGCACTATATTCACAATCCTATCTGTA
GATTGTAGATGTTCAAACATATATTGAGCACAGACCTGGAAATGTACCTG
TTTGCTTTGCTTTTTCTGGCCTCCAATATCAACCTCCTTCCCCTATTCGG
AACACGTACCCCCGAGGTCTTAGCAGAAGAAAGAAAAGTAACGTCCTACG
TGCCGTGGAAGCTCATTGGTAATTTGAGACGAAACTTACAGGTCGCACTT
AACATATTATGGACTTCCAAACAAAGCGATGGTGCAAGGGAGGCGGAATT
TTTGTCATCTAGTGGGGGAGCGACTGTGATCTTTGCGGTGCCTTCGCCCA
GTTGGTCTGTCTCTTCTTAGTAGAAGCAGGTTGGTCTGATCGGAACCACC
AGCCTTCCTAATTCATGTCTTCATTGTCAGCAAGACAAAACCAAGTAGTT
GTAAGGTTTGGACGCGAAATCTGTCTTTTCATCCGAACGCATTTTCAATC
GCACAGGTATTTGACGGAAGTGGAATCTGTACTTCTCGGCATCTATATTG
AAATATACAAGAAAAAAGCCATAACTTGCACTACAAATTTAGGTACGTGT
AGTCTATGATTTGTATGTTCAGTCTCTGGAAAATTAAACGATTTCGACGA
GAAAGATACGTTCGAACAGCTGCGAAGTAGTGAGCTGTTTCAGCGTTTCC
TTCAACACCTCTTACAGAGCTCACCTATATGCCCGATGCCTGTCTTTCAC
GAGTTGTTCCTTGAATGGGTGGAATTACCTACACAACAAACGACCAATGG
TTCTTTGACAGCAGAAGTGGACTTCGGGGATTGGCTTTTGGCAAAAGGAA
GTAATTGTACGGAGACAATAACAAAGATTGTGCAACCCCTGATTTTTACA
CATGTTACGACCATGATCTGGCAACATTATGCTGTCGGCTTTTTAGAGAC
TCATGAGCAAAATTTAGGATTTTGGAATAGATTTGCACCACTCCGCCGCG
TCCTGCCTCCGGGCTGGCTCCGGCAATGGACACCGGGAAGAAAGCGGAAC
GAGAATGACATACCGCTGGACGCAAAAAGGAGAAATGACTGACTTTGATA
TCTATGTTAGATGTGTAGTCAGGGAAACATCTTTGTCTTAAAGAATGGAT
CTCGCTCGGCATGGAGGAATGGTAATACATTTGTTGCTCCATACTCAACA
CACCAACGCGAAGCTTGGTAAGAGGGATAGCAGCTACCGTTCTCGGCGAA
TGTACATAATGCCACAGCCTCCACTTTCATAAGAAAATGTGAAGTAAGTA
TGCGAGCCAATATGCTGGTAAGGAATGGGAAAATGTATCAATGAGGCGTC
ACTCTTGGCCAAAATAGTCTTCCCAAAACATTTTTTTTACACACGTCCAT
GGAGAAGGAGTATCTTTCACGAGAAAAGTCAATGTCAGAGTCGCTTGAAA
GACAAGAAGGTTTTGTCACATTTTCAATGGAAGAAACCTCCCAATGTGCG
CCAGTGACATCACTTGTTCCGACGTGCACAACGAGATGACAGCGTAAAAG
GTTTTAAAAATACAGCGAGTTCAAATTGAGAGTGATTAAATGCTGTGTGA
TATTTGCTCCATAACTCGATCAGTCTACAACTGTTTCATTTCTAGGGCTA
CACCTCGCACCCAAACCTTTTCTAAAGGGCCTTAAGCGACGACTTCATCG
AGTAATGCGACGACGAATGTTGCAAAATGGAATGGTGCAAATTCTGTATC
GGTGAACAAGTCACGCTTACG
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Coding sequence (CDS) from alignment at CM002465.1:316913..319083-

>rna5170 ID=rna5170|Name=rna5170|organism=Nannochloropsis gaditana|type=CDS|length=357bp|location=Sequence derived from alignment at CM002465.1:316913..319083- (Nannochloropsis gaditana)
ATGCCTGTCTTTCACGAGTTGTTCCTTGAATGGGTGGAATTACCTACACA
ACAAACGACCAATGGTTCTTTGACAGCAGAAGTGGACTTCGGGGATTGGC
TTTTGGCAAAAGGAAGTAATTGTACGGAGACAATAACAAAGATTGTGCAA
CCCCTGATTTTTACACATGTTACGACCATGATCTGGCAACATTATGCTGT
CGGCTTTTTAGAGACTCATGAGCAAAATTTAGGATTTTGGAATAGATTTG
CACCACTCCGCCGCGTCCTGCCTCCGGGCTGGCTCCGGCAATGGACACCG
GGAAGAAAGCGGAACGAGAATGACATACCGCTGGACGCAAAAAGGAGAAA
TGACTGA
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Synonyms
Publications