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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100032g16.271.mrna |
| Orig protein id | gnl|cribi|Naga_100032g16.271 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:302109..303238 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5163 ID=rna5163|Name=rna5163|organism=Nannochloropsis gaditana|type=mRNA|length=3001bp
TCACTGATATTATTCCGGCCTTCCTCTCGAACACATGCAGGGTCACTCCA
GAGGATTTCTCAATTTACGGGATTTGGGAGAAATACTCGCTTTTTCGGAC
GAGTATAATTATTTTACCTCCAGCCCCAGCATTGACATTGAGAACGTCGC
GGACTTGTGTGCCCTACGGTACCTGCTTTTTTCTGTTCCGGGAGGCGGGG
AGGGCAGAAATACGTGGAGAGTACCGTAACAAGCCTGAAACACGGGCGTG
GCAACACTGGTGGTCAAAGATAGATTGAAGGTGTGGAAACTATGGAGTTC
AACTCCCTCCCCGGGTCACCTGCTCGACAAACGAATAACGGGGGGGGGGA
GCAGACGAGGCAGAGGCGGAGGGACGGTTCGGCAACACCAGTCTTACTCC
TGGTTTTCAGCGCATGTTCACAACCGCCACTCCTGCTTCAGCCTTGGCGT
ATACAACGACCGTCACGCGGAATCATACCAGCGAGACAAAAGGTGCAGTG
GCGATGGCCATGAAGGAGGCAGCTTTCTCGTCCTCCTACCCCGACCAAAG
TCTCCGAGCACGTGAAAGACACAAAGACAAGATCTCAAAAAAGCTTCGGC
AGCTTGCCCAAGACGCCTTAAGCAAACGTTTGCCGGGCCGTGCGTGTTTT
TACGCCGACAAACTAGTCCGCCTCACCGCAGGCCGCCTCCCCGAGGACGT
GGTCTTGCTCGGCCGGGCCCATTACCAGGCGCGGGCGAACCGGAAGGCCG
TGCATGTCTTGGAAAAATACGGCTTGTTGGCCATCAAGGATGCGCAGAGA
CCCTTGACTCGGCAGGAGCAACACGCCTTGTTCACAGCCGCGGCTGGTTC
TGTCCCTGCGGAGATAGATACGGCTGGCGGTGGTCAAAGCCTCAAGGGCA
GCAGGAAGGACGCGTCCGTCAGCAATGTACATACCACAGCAAGGAGCACA
TTAGAGGCGTATCTCCTTGCTGCGCAATGTTTGGGAGCCTCCGATCCACA
GGAGGAATGCTTGCACCTCCTCGATCAGATTTTGCCGTGTTGGGAGGACG
AGGAGGAGGATGCGGAAGGGGAAGGAGATAGGGGGGAGAGAAGGCAGGAG
GAGTCGCCGTGCGAACGGCAGTCAAGACATTTGCGGAACGTTCGTGCAGC
TGTTGTGGCGGCGGGGCGTCAAAACGTCGCCGACGTGGCAGAAAGCTCCA
AGTCGGGTTCCCGGGGGGACAATCCCAGAAAGAAGGGCTCTTGGCGCGCG
GAGACGTGGCGGCAAGCGGAGATGCTGAGAGACGGTAAAGGAGAGCCAAG
CTCCCGCTCGTTACGCCCGACAGAGCAGGCACAAGCAGTGCTCACCACGA
TCGCGGCCCTGTGTTTCTTGCGCGCTCAAATTTTCGCAGGGCAGGACAAT
AGGGAGAGGGCTGTGGCCTGGTGCCGGCATGCGTTGGAGGTGGACGTGTA
CTGCGTGGAGGCGTTGGAGTTCTTGGCCGATCGGAAACTTTTGTCGCAGG
AGGAAGAACAGCGGTTGCTGGCGCGGGAGTTGGCCTTCGACCCCGGGTCG
GAGGAGGAAGGGGAGGAGGACGCTGCAGGCACAGAGCAGGTGGTGGGAGA
TGACTGGCTCCGACTCATGTATGCGACTCGCCTCCTATGTTTCTCGGACG
GCGTCCTGTCGGCGGAGGAACAACATCAGACGATCCATCGTGCCTTCGCG
GGTTTGGAAGCGTTGGGCTTTGGGAGAGACGCGGCCACCCTGACAGCCCA
GGCGGCTTTAGCCTATTACTACCAACATGATTTGGCGGGCGCTCACCGGC
TCTGTCAGCAAATTCGCACCCAGGATCCCTTTTTCGACAAGTGTCTGCCC
CTCTACCTGGCATCTTTGGCCGAGCTGCGTCTAAAAACCGAGCTGTACTA
CGCGGCGCACAGACTGGTAGACACTCAGCCCAGGAGCGCGGTGGCGTGGT
TTGGCGTCGGGTGCTACTACGTCTGCATTCACAAAAATGAGACCGCGCAA
CGCTACTTCCATAAGGCTGCCAAGCTTGACCACACCTTCGTCCCTGCCTG
GATCGGATTCGGGAACGCCTTCGCCGCGCAGGACGAGAGCGATCAGGCCA
TGGCCGCCTACCGGACTGCGGCGCGTCTCTTCCCTTCGGCGCACTTGCCC
TTGCTATACACAGGCATGGAGTACCTGCGGACCAACAATCTGTCCCTGGC
CTTACATTTCGTGCGGGAGGCTCACCGGCTCAACCCGATGGACGCCTTGG
TCCACAACGAATGGGGAGTGATCTTGTACCGCCGAGGACATTTCCGAGAG
GCCGCCGCCCGTTTCGAGAAGGTACTGGGCTTGGCCAGTGCGTCCAACAA
GGCCTGCACACTCGTGCGGTGGGAAGCAACGATGGTGAACCTGGCGCATT
GCTGTCGAAAGACTGGTCGCTTTAGGGAGGCCATCGCGTGGTATGAGCGA
GCTTTGGGCCTGTGTACTCAGAAAAGTGGGACCTACGTCGCCCTGGCTTT
CACCCACCACCTGTGTGGCGATCTGGATCGGGCCATCGAATACTACCACC
GTGGCCTTGGGCTGAAGAGTGACGATGCCTTTGCATCTGCCATGCTCACT
CAGGCGCTGCAGGACGCGGTATTGGGAGTCGAGACCGAGGAAGGCATGGA
AGGAGATAGGTTAGGGGATTGGTCGCCAGCGAGAGCCTCCCTGATTATGT
CTGTGCCCTTACCTTCTCCCTTGGCCATAAGTGTTGCGAAGGGGACTGAG
CGGGTGGGACGAAGAAGCAGTGTCGGGAGTGAGATTTTTAATGCCATGGA
TGAGGACCTGGGAATGGAAGAGGACAGCGTGGATTTGTCGGAATAATATC
AACCAGAAAAAGGATTGAGAGAGCCAAGATAGTTTGATTCGACCTTTCAA
GGTCCAAAAGAAGAGATTGGGGAATTGCATGAGGAGTTACGGTATTTGAG
CTCAGTTATTGTTTTACAGTGTTTATTTTTACAGCGTTTTGACCCGTCTA
T back to topprotein sequence of rna5163 >rna5163-protein ID=rna5163-protein|Name=rna5163|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MPVPTDGNLAAMQSRWPEVDLRVLSSHLRLAKDDLDDAIRHYEGFLAWRS
ALGPVSIASVEDNLRANNGKGPFMLTLEYEPEEAGKHPPIIMMQGMIKGT
RAEMVKQGGGFRMPDADYRAAVFDVLHQYYPWMESSQVIFLDPLYVVKMA
LWGMGKIFGPSWKEKFVVGSKAAWPEGVKDPDVEKYMETTPGGRALGWEA
DGTIRYDMEEYIERRKEWVSTNVCLNDHILQDTVLRKGNLGRGSRRAGAM
RCRTAGSKPHESVKTWKA back to topmRNA from alignment at CM002465.1:302109..303238+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5163 ID=rna5163|Name=rna5163|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp|location=Sequence derived from alignment at CM002465.1:302109..303238+ (Nannochloropsis gaditana)
ATGCCCGTGCCAACAGATGGCAATTTAGCGGCGATGCAATCCCGGTGGCC
TGAGGTCGATCTACGAGTGCTGTCGTCGCACTTGAGACTTGCTAAAGATG
ACTTGGATGATGCTATACGGCACTATGAAGGTTTTTTGGCATGGCGTTCG
GCATTAGGGCCTGTTAGTATCGCGTCGGTCGAAGACAATTTGCGGGCAAA
CAATGGCAAAGGTCCTTTCATGTTGACGCTGGAATACGAGCCTGAGGAAG
CTGGAAAGCATCCACCGATCATTATGATGCAAGGAATGATTAAGTGAGTA
TATAGTATTTTTGTATACAATTTAGAGTAGGTAAAATGTGACACTCTGTC
AAAAATGGCGTCCCACATCAAAAAAAGGCATAGGCCTTAGAAACTCTCTT
TCCCATTCGCTTACACTAGCTCACTTTTCCAAATAACAATCACAGAGGTA
CTCGCGCAGAAATGGTCAAGCAGGTAGTGTATGCGGCCGAACGGGCTCAA
GCACTGATGCCCCGGGAAGGCCCAGCGCTCGTGAAATTTCTCATAAACac
ccaaggggggggggttccgCATGCCGGACGCCGACTACAGAGCCGCAGTC
TTCGACGTTCTCCACCAGTACTATCCCTGGATGGAAAGCAGTCAAGTCAT
ATTTTTGGATCCTTTGTACGTGGTCAAGATGGCCTTGTGGGGCATGGGAA
AGATTTTTGGGCCgtcgtggaaggagaaatttgTGGTCGGGTCGAAGGCG
GCGTGGCCCGAAGGAGTGAAGGAcccggacgtggagaagTACATGGAGAC
GACGCCAGGAGGCAGGGCCCTGGGCTGGGAGGCCGACGGAACAATCAGAT
ATGATATGGAGGAGTACATTGAAAGGCGCAAGTCGGAAGAACGAAAGAAG
GcgccgcaggaggagggagagaccgaATAAGATTGGGAtaggggggcagg
cggcctCTCTGCGCCTAGAGGGAGTGGGTGAGCACCAATGTATGTCTAAA
CGATCATATCCTTCAGGACACTGTCTTAAGAAAGGGAAATTTGGGCAGAG
GGAGCAGACGAGCGGGAGCTATGCGGTGCAGAACGGCAGGGTCCAAGCCC
CATGAGTCCGTTAAAACGTGGAAAGCATGA back to topCoding sequence (CDS) from alignment at CM002465.1:302109..303238+ >rna5163 ID=rna5163|Name=rna5163|organism=Nannochloropsis gaditana|type=CDS|length=3228bp|location=Sequence derived from alignment at CM002465.1:302109..303238+ (Nannochloropsis gaditana)
ATGCCCGTGCCAACAGATGGCAATTTAGCGGCGATGCAATCCCGGTGGCC
TGAGGTCGATCTACGAGTGCTGTCGTCGCACTTGAGACTTGCTAAAGATG
ACTTGGATGATGCTATACGGCACTATGAAGGTTTTTTGGCATGGCGTTCG
GCATTAGGGCCTGTTAGTATCGCGTCGGTCGAAGACAATTTGCGGGCAAA
CAATGGCAAAGGTCCTTTCATGTTGACGCTGGAATACGAGCCTGAGGAAG
CTGGAAAGCATCCACCGATCATTATGATGCAAGGAATGATTAAAGGTACT
CGCGCAGAAATGGTCAAGCAGgggggggggttccgCATGCCGGACGCCGA
CTACAGAGCCGCAGTCTTCGACGTTCTCCACCAGTACTATCCCTGGATGG
AAAGCAGTCAAGTCATATTTTTGGATCCTTTGTACGTGGTCAAGATGGCC
TTGTGGGGCATGGGAAAGATTTTTGGGCCgtcgtggaaggagaaatttgT
GGTCGGGTCGAAGGCGGCGTGGCCCGAAGGAGTGAAGGAcccggacgtgg
agaagTACATGGAGACGACGCCAGGAGGCAGGGCCCTGGGCTGGGAGGCC
GACGGAACAATCAGATATGATATGGAGGAGTACATTGAAAGGCGCAAGGA
GTGGGTGAGCACCAATGTATGTCTAAACGATCATATCCTTCAGGACACTG
TCTTAAGAAAGGGAAATTTGGGCAGAGGGAGCAGACGAGCGGGAGCTATG
CGGTGCAGAACGGCAGGGTCCAAGCCCCATGAGTCCGTTAAAACGTGGAA
AGCATGAATGCCCGTGCCAACAGATGGCAATTTAGCGGCGATGCAATCCC
GGTGGCCTGAGGTCGATCTACGAGTGCTGTCGTCGCACTTGAGACTTGCT
AAAGATGACTTGGATGATGCTATACGGCACTATGAAGGTTTTTTGGCATG
GCGTTCGGCATTAGGGCCTGTTAGTATCGCGTCGGTCGAAGACAATTTGC
GGGCAAACAATGGCAAAGGTCCTTTCATGTTGACGCTGGAATACGAGCCT
GAGGAAGCTGGAAAGCATCCACCGATCATTATGATGCAAGGAATGATTAA
AGGTACTCGCGCAGAAATGGTCAAGCAGgggggggggttccgCATGCCGG
ACGCCGACTACAGAGCCGCAGTCTTCGACGTTCTCCACCAGTACTATCCC
TGGATGGAAAGCAGTCAAGTCATATTTTTGGATCCTTTGTACGTGGTCAA
GATGGCCTTGTGGGGCATGGGAAAGATTTTTGGGCCgtcgtggaaggaga
aatttgTGGTCGGGTCGAAGGCGGCGTGGCCCGAAGGAGTGAAGGAcccg
gacgtggagaagTACATGGAGACGACGCCAGGAGGCAGGGCCCTGGGCTG
GGAGGCCGACGGAACAATCAGATATGATATGGAGGAGTACATTGAAAGGC
GCAAGGAGTGGGTGAGCACCAATGTATGTCTAAACGATCATATCCTTCAG
GACACTGTCTTAAGAAAGGGAAATTTGGGCAGAGGGAGCAGACGAGCGGG
AGCTATGCGGTGCAGAACGGCAGGGTCCAAGCCCCATGAGTCCGTTAAAA
CGTGGAAAGCATGAATGCCCGTGCCAACAGATGGCAATTTAGCGGCGATG
CAATCCCGGTGGCCTGAGGTCGATCTACGAGTGCTGTCGTCGCACTTGAG
ACTTGCTAAAGATGACTTGGATGATGCTATACGGCACTATGAAGGTTTTT
TGGCATGGCGTTCGGCATTAGGGCCTGTTAGTATCGCGTCGGTCGAAGAC
AATTTGCGGGCAAACAATGGCAAAGGTCCTTTCATGTTGACGCTGGAATA
CGAGCCTGAGGAAGCTGGAAAGCATCCACCGATCATTATGATGCAAGGAA
TGATTAAAGGTACTCGCGCAGAAATGGTCAAGCAGgggggggggttccgC
ATGCCGGACGCCGACTACAGAGCCGCAGTCTTCGACGTTCTCCACCAGTA
CTATCCCTGGATGGAAAGCAGTCAAGTCATATTTTTGGATCCTTTGTACG
TGGTCAAGATGGCCTTGTGGGGCATGGGAAAGATTTTTGGGCCgtcgtgg
aaggagaaatttgTGGTCGGGTCGAAGGCGGCGTGGCCCGAAGGAGTGAA
GGAcccggacgtggagaagTACATGGAGACGACGCCAGGAGGCAGGGCCC
TGGGCTGGGAGGCCGACGGAACAATCAGATATGATATGGAGGAGTACATT
GAAAGGCGCAAGGAGTGGGTGAGCACCAATGTATGTCTAAACGATCATAT
CCTTCAGGACACTGTCTTAAGAAAGGGAAATTTGGGCAGAGGGAGCAGAC
GAGCGGGAGCTATGCGGTGCAGAACGGCAGGGTCCAAGCCCCATGAGTCC
GTTAAAACGTGGAAAGCATGAATGCCCGTGCCAACAGATGGCAATTTAGC
GGCGATGCAATCCCGGTGGCCTGAGGTCGATCTACGAGTGCTGTCGTCGC
ACTTGAGACTTGCTAAAGATGACTTGGATGATGCTATACGGCACTATGAA
GGTTTTTTGGCATGGCGTTCGGCATTAGGGCCTGTTAGTATCGCGTCGGT
CGAAGACAATTTGCGGGCAAACAATGGCAAAGGTCCTTTCATGTTGACGC
TGGAATACGAGCCTGAGGAAGCTGGAAAGCATCCACCGATCATTATGATG
CAAGGAATGATTAAAGGTACTCGCGCAGAAATGGTCAAGCAGgggggggg
gttccgCATGCCGGACGCCGACTACAGAGCCGCAGTCTTCGACGTTCTCC
ACCAGTACTATCCCTGGATGGAAAGCAGTCAAGTCATATTTTTGGATCCT
TTGTACGTGGTCAAGATGGCCTTGTGGGGCATGGGAAAGATTTTTGGGCC
gtcgtggaaggagaaatttgTGGTCGGGTCGAAGGCGGCGTGGCCCGAAG
GAGTGAAGGAcccggacgtggagaagTACATGGAGACGACGCCAGGAGGC
AGGGCCCTGGGCTGGGAGGCCGACGGAACAATCAGATATGATATGGAGGA
GTACATTGAAAGGCGCAAGGAGTGGGTGAGCACCAATGTATGTCTAAACG
ATCATATCCTTCAGGACACTGTCTTAAGAAAGGGAAATTTGGGCAGAGGG
AGCAGACGAGCGGGAGCTATGCGGTGCAGAACGGCAGGGTCCAAGCCCCA
TGAGTCCGTTAAAACGTGGAAAGCATGA back to top
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