rna5158, rna5158 (mRNA) Nannochloropsis gaditana

Overview
Namerna5158
Unique Namerna5158
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2266
Alignment locationCM002465.1:292194..293411 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100032g8.275.mrna
Orig protein idgnl|cribi|Naga_100032g8.275
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:292194..293411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g8gene4979Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25532.1cds5146Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5158rna5158-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5158 ID=rna5158|Name=rna5158|organism=Nannochloropsis gaditana|type=mRNA|length=2266bp
TGCACCAACATATTTATCTCCATCTGATCCAAACTAAGCTTCATAAAGAT
TTTTATTCGTAGACTTTGTATGGTGGTCGTAACTTGTACGGTCAATTCAT
ACATTTAAATTGTGAGAATCTTTTCTCCATAGAAAAATATTGCGATTGTT
CATGACTAGATGGCTTTCGCTTGAGAGCAATAAATTATTCTGCAGAACCA
TTCATACACTCAACATTTCTGAATGTTATGAAGTATTTTGTGCAGATTTT
CTGTGGGAAGATGAGGACTTTGTCTCTGATCGCGACAGCAGCCGGACTGG
TGGGCGTCGCATATGGTGCGGAGCAAACATGCGGGACACGGCTCGCGCCC
GAATGCCCCGATGGATCGTTTTGCAGCACTGGATTGGGCGAATGCACGAG
CCTACTTGGCGGCCTCAATACAAAAGGAGGCATGTGTAAGCTGAAACCAG
ACATGTGCGCCCAATTTGTCGACCCAGTGTGCGGTTGCGACGGCGTTGAT
TACTCAAATGAATGCGAGGCCAACATGAAGGGCGTATCCGTGCAGTCAAA
AGGCAATTGTCCCAAAAGTGGCGGACTAAACAACCTTCGGCCGGGCATTG
GTGGCAACGCCGAGGGAGATCATGATTCAACTGCAGCTATCTACGGCACC
TCTACAACAGACTGCGGTGGACCGACGGCCATTAAGTGTGCGCCTGACCA
CGTTTGTATCTATGAAGCGGGCAACGAGTGCGGAAAAGCCGAGGGTTCCG
GTCACTGCGAGCCCACGAAAGACATAATGTGCATGACTGACTACACCCCA
GTCTGCGGATGCGATGGTACAACGTACAGCAACGCCTGTGTGGCGCAATA
CCAAAACGGCGTTCCTGTTCGAGGCCCCGGTACCTGCGAAGATGCAAGCG
AGGGAACCGCGGACATTGCGGACACAAGTGGAGGACAGGATGTCGAAGAG
CCCGCGAATGACCTGATTGACGGAGCGGAGGAGGTGGGCGAGGAACGAGA
GGGAGGGCTTTTCCCCACGCACAAATGCACAGCAGATAAAGATTGCGGTC
TCCACGGGTATTGCCACGTGCAAGAAGGGGGATGTAGCTCAAAAAACCCC
ATCACGGAGGGTGTGTGCGCCAAGAAGCCTTTGCGGTGTGAATCGCCGCC
TTTTACAACGGCTTTCACTGCGGTGTGCGGCTGCGACGGCACTACCTACC
CCACAGAGTGCCATGCCCGGCAAGCAGGAATGAGCATTTTGTATCGGGGT
GCTTGCTTTAGACAGGGAACGCCCGCGCCGGCCGACTCTTGCGGTGGTAA
GGGCCTCTATGCAGAGACCTGCAATAAGGAGGGCTACTACTGCCTCTACC
AGCGGGGGGTTTGCAGTTTGCACGACAGCCTAGGCACATGCACCAGCAAA
CCGGCCATGTGCACACAGGAGATCGACCCCGTGTGCGGGTGCAACGGGAA
GACCTATGACAATGCCTGCAAAGCAGCCATGGCGGGGTCCTCAATCAAGA
GCAAGGGCGAGTGCCCGTTCGTCACCATCGACGACGGGTGGGGAGGAGGA
GGCTTGACCATCGGCCTCCTTGCAAACGTGACCGGAGGGCCCTGCAAACC
GAGTGCAGGCCTTACCTGCTCTGAGGGATACTACTGCACCTACGCCGCCG
GCGTTTGTGGCTCGGAAGCGACCGCTGAGGGTTTATGCGTCGTCCAGCCC
GAGTCCTGCGTGCCAGACCCATCCAGTGCCCATTCCGTTTGCGGTTGCGA
CGGGCATTCATGGGCCACTGCATGCGACGCAGCCATGGCGGGAGTGGCCT
TGAAGGCGGAGACAGAGTGTCCACTAGTCTCTGTGCAGGTCACGTCGCCG
GCGATGCATCGTTATCGAGGACGAGTGGGGGGAGTCATGGTGATGATGAC
CGTGTTTGGAATTTTGCTAGGCGCGTTGGCAATCTTTTGATTTTGGGACA
GCAAGAAAAAAACGAAAAAGAGCTTGGCGGGAAAGAAACTTTGGACAAAG
CACATGGAAGAAATGACAACGAAAGAGGAAATACGTGCAATGAGGAAGGA
GTAACAGATTAGGAGGGATACGCATTGAAGCTTGAAATTGCGGCGGCGGA
AACGATCGAGCAGAAAATCCATGACGACGCGAGCGTTCAAAGAAGAGGAG
TGCGTGTGCATTTGTAATTGTGCTTTCGCGACGCGGTCATGAGCCACACA
ATGTGACGATATGTGTCCGCCTTGCCGAGAGTCTTTTGAAAAGTATCTGC
GAAGTTGAGCTTTGTC
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protein sequence of rna5158

>rna5158-protein ID=rna5158-protein|Name=rna5158|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MTAVHRGVAKLSKTCFSFSRTRGHPTLSKAALSASKEVVQWGRLGRSCFP
MSAGTLGLWPGGETVLRLPSYPSNQPTCTPCPIPSVSLRNWGTLARVARN
LGGCGGRILSLRRHTPMSFPPSSSAFAPLPSVPATLPSPPFPMLPSCRSV
MTQASLRDTNARIEPKVPSQSSIQFVPRRNFWSPRFLRQLGLPWFAQVFY
GTLFVIGVGALAVTLFATSTVFAVLFLVAFLGYKLFNRQPNLMRQVMRRQ
RPAGSPPSLFGPLLDMMTDGMLFDGLKSARGAIERDVLGIINSHPQLRRY
GTDFRSTGLHKMSMQVVNEGEKHVVMQLLVASSKPREMFVQVVASRHEEE
EDGTGDGEERWDYEDVSVQTPDGKVIDLTKELFKGKGGRRIIIDVPPRRV
KKDED
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mRNA from alignment at CM002465.1:292194..293411-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5158 ID=rna5158|Name=rna5158|organism=Nannochloropsis gaditana|type=mRNA|length=1218bp|location=Sequence derived from alignment at CM002465.1:292194..293411- (Nannochloropsis gaditana)
ATGACGGCAGTGCACCGTGGTGTGGCTAAGCTGTCCAAGACCTGCTTTTC
CTTTTCACGGACCCGGGGCCACCCCACACTTTCAAAAGCTGCCTTATCTG
CCTCGAAAGAAGTAGTCCAGTGGGGACGCTTAGGGCGCTCGTGCTTCCCC
ATGTCTGCCGGCACACTAGGCCTGTGGCCAGGAGGGGAAACGGTCTTGCG
GTTACCCTCGTACCCCTCGAATCAGCCAACCTGCACCCCGTGTCCTATCC
CCAGTGTTTCTCTGCGTAACTGGGGCACTTTGGCACGGGTAGCGAGAAAT
TTGGGCGGATGCGGCGGGAGGATACTGTCATTGCGACGGCATACGCCTAT
GTCCTTCCCGCCCTCATCCTCTGCCTTTGCTCCCCTCCCCTCCGTACCCG
CCACTCTTCCCTCCCCACCCTTTCCGATGCTTCCTTCTTGCCGGAGTGTC
ATGACACAAGCAAGTCTTCGAGATACTAATGCGCGGATCGAGCCTAAAGT
GCCCTCTCAGTCCTCAATTCAATTTGTCCCGCGCCGAAATTTCTGGTCTC
CGCGTTTCCTGCGTCAGCTCGGGTTACCCTGGTTCGCGCAAGTATTTTAT
GGGACACTCTTCGTCATCGGCGTCGGTGCCCTGGCCGTCACCTTATTCGC
GACATCGACTGTCTTTGCTGTTCTTTTTCTGGTCGCTTTTTTAGGGTACA
AACTCTTCAACAGACAGCCGAACCTGATGCGCCAGGTCATGCGGCGACAA
AGGCCTGCAGGGTCCCCGCCCTCACTTTTTGGTCCGCTCCTGGACATGAT
GACAGACGGGATGCTTTTTGATGGTTTAAAAAGTGCTAGAGGTGCCATAG
AACGAGACGTGTTGGGTATAATTAATAGTCATCCTCAGCTTCGGAGATAT
GGGACAGACTTTCGCTCGACGGGCTTGCACAAGATGAGTATGCAGGTGGT
GAACGAGGGAGAGAAGCATGTCGTGATGCAGCTCTTAGTAGCTTCAAGTA
AACCAAGGGAGATGTTTGTGCAGGTGGTTGCAAGTCGGCATGAGGAGGAA
GAAGACGGGACAGGAGATGGAGAGGAGAGGTGGGACTATGAAGATGTATC
AGTGCAAACACCAGATGGGAAGGTTATAGATTTGACAAAGGAGCTATTCA
AAGGAAAAGGAGGAAGGCGTATAATTATTGATGTACCTCCACGACGAGTG
AAGAAAGATGAGGACTAA
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Coding sequence (CDS) from alignment at CM002465.1:292194..293411-

>rna5158 ID=rna5158|Name=rna5158|organism=Nannochloropsis gaditana|type=CDS|length=1218bp|location=Sequence derived from alignment at CM002465.1:292194..293411- (Nannochloropsis gaditana)
ATGACGGCAGTGCACCGTGGTGTGGCTAAGCTGTCCAAGACCTGCTTTTC
CTTTTCACGGACCCGGGGCCACCCCACACTTTCAAAAGCTGCCTTATCTG
CCTCGAAAGAAGTAGTCCAGTGGGGACGCTTAGGGCGCTCGTGCTTCCCC
ATGTCTGCCGGCACACTAGGCCTGTGGCCAGGAGGGGAAACGGTCTTGCG
GTTACCCTCGTACCCCTCGAATCAGCCAACCTGCACCCCGTGTCCTATCC
CCAGTGTTTCTCTGCGTAACTGGGGCACTTTGGCACGGGTAGCGAGAAAT
TTGGGCGGATGCGGCGGGAGGATACTGTCATTGCGACGGCATACGCCTAT
GTCCTTCCCGCCCTCATCCTCTGCCTTTGCTCCCCTCCCCTCCGTACCCG
CCACTCTTCCCTCCCCACCCTTTCCGATGCTTCCTTCTTGCCGGAGTGTC
ATGACACAAGCAAGTCTTCGAGATACTAATGCGCGGATCGAGCCTAAAGT
GCCCTCTCAGTCCTCAATTCAATTTGTCCCGCGCCGAAATTTCTGGTCTC
CGCGTTTCCTGCGTCAGCTCGGGTTACCCTGGTTCGCGCAAGTATTTTAT
GGGACACTCTTCGTCATCGGCGTCGGTGCCCTGGCCGTCACCTTATTCGC
GACATCGACTGTCTTTGCTGTTCTTTTTCTGGTCGCTTTTTTAGGGTACA
AACTCTTCAACAGACAGCCGAACCTGATGCGCCAGGTCATGCGGCGACAA
AGGCCTGCAGGGTCCCCGCCCTCACTTTTTGGTCCGCTCCTGGACATGAT
GACAGACGGGATGCTTTTTGATGGTTTAAAAAGTGCTAGAGGTGCCATAG
AACGAGACGTGTTGGGTATAATTAATAGTCATCCTCAGCTTCGGAGATAT
GGGACAGACTTTCGCTCGACGGGCTTGCACAAGATGAGTATGCAGGTGGT
GAACGAGGGAGAGAAGCATGTCGTGATGCAGCTCTTAGTAGCTTCAAGTA
AACCAAGGGAGATGTTTGTGCAGGTGGTTGCAAGTCGGCATGAGGAGGAA
GAAGACGGGACAGGAGATGGAGAGGAGAGGTGGGACTATGAAGATGTATC
AGTGCAAACACCAGATGGGAAGGTTATAGATTTGACAAAGGAGCTATTCA
AAGGAAAAGGAGGAAGGCGTATAATTATTGATGTACCTCCACGACGAGTG
AAGAAAGATGAGGACTAA
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Synonyms
Publications