rna5144, rna5144 (mRNA) Nannochloropsis gaditana

Overview
Namerna5144
Unique Namerna5144
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1209
Alignment locationCM002465.1:244158..245167 -

Link to JBrowse

Properties
Property NameValue
Productbis(5 -adenosyl)-triphosphatase-like protein
Orig transcript idgnl|cribi|Naga_100232g8.7104.mrna
Orig protein idgnl|cribi|Naga_100232g8.7104
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:244158..245167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100232g8gene4965Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25536.1cds5132Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5144rna5144-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5144 ID=rna5144|Name=rna5144|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp
GCCCCTGAAACAGGTCTTATTACCTCATCTCAGTCCAAGCACGCCCTTCC
CGTCCACAGTCTTCTTTCGAGAAATTTTTGGCTACATCAGCTAGCGAAAA
AGGCATTTGAACGTCTCATGTCATCGTTTTCAAGTGGTATTTGCATGCGG
CACCTCTCTAGAAGGCTGCCTTCCCCTAGAACCAAGAGCATCATGAACCG
AGCATTAGTCAGGGCATTCGGAGGGCAAAGCAATTGTATTAGCAGGACAG
TATCTCTTCTTCAACCACCTGTCATATCGGGGCTACCATCACAAGCCGTC
CGTAACTTCAGCAAAAAAGACCGACGAAAAGGCAGCGCCAATGCTGGCGG
CTCTGGGTCCGGCTCGGGGACGGCCGCACCGTCACGCCACACTGCACCGC
ACCACCACCACGCCCCGTCCATCGGCGGCGTGACACATAACGAAAAGCCC
TTGGTCGACCTGGACAAGCTGCAATCGAAAATGGAGCGGGTGCTGCGAGG
TTTGGAAAAAGAGTTCTCGGGCGTGCGGGGGGGACGGCCGGACGCGGGGA
TGTTTGACCACCTCCACGTGCAAGCCTATGGGAAAGCGACGCCTCTTTCC
GACGTTGCTCAGGTCACGATCAAGAGCCCGACGCTGGCTGTCATCCATGT
CTACGACCCGGACATCCTCCATCCGGTCCACGAAGCGGTCCAAGCCAGCA
AGCTCGAGCTGAATCCCCGTGTGGACGGAAACGTGGTGAATGTCCCACTG
CCCAAACCGTCCGCGGAAATGCGGCAAGGATACGTGAAACTGGTGAGTCA
ATGCACGGAGACGGCCCGGCAAAACCTTCGGAAGATTCGGCGGGAGGGTA
TGGACCGGTTGAAAGGGGAAGGGAAGGAGGGTGTGGGGGAGGACGACGTC
CGCAGGAGCTCCAAGTTGATCGAAAGCATGACGGAGGAGTGGGTCAAGAG
GGTCGGGGAGGCTCTGGAGAAAAAGAAGAAGGAGATCATGACGGTATAGA
CCCAGGAGCGTGTGGCAGCCACGTGGACCGAGACGGCGGGTGAAGCTCGT
CTGTGCGGCCATTTGAATGCATGGACTGACCGTCGCCAGGGAAAAGAAAG
TCTAACAATTGCAACAGGATAGCTGATGATAGCAACCGCGTCAAGATTAG
GCCGATGCCTGTCATGGGTACGACACGGCTCAGCCGTCTTGGTGACATTT
TTCTTTCGC
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protein sequence of rna5144

>rna5144-protein ID=rna5144-protein|Name=rna5144|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MSLPYSAALLRRCQNKRRITVTAVAATAVFGLPTVASFAFASRHVGQYQH
LPNLIPRVSSPMSSTAIGCNDRPASLSSALAPPPLPSPLFFGPYEITPDQ
VFFQSHHSMAIVNLKPLVPCHVLILPYRVVERFSDLRPEEVSDLYRAVHE
IGPVLQTYQKKQGLTISMQDGKAAGQTVPHVHVHVLPRLEGDFTPNDKVY
EELEAVHLKKHFDLDVERRPRTQAEMAAEALELRKLFPHRQGRAEGKEGV
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mRNA from alignment at CM002465.1:244158..245167-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5144 ID=rna5144|Name=rna5144|organism=Nannochloropsis gaditana|type=mRNA|length=1010bp|location=Sequence derived from alignment at CM002465.1:244158..245167- (Nannochloropsis gaditana)
CCCGCTACAGAAAATCTTCCATTCGATATTTTACAAAAGTTCATCGGTTT
GAAGCCAGAATGAATCGACTTGCACGAGCATAATAACCCGTCAACTCCTC
GGTATTACGAATCTATCACCGGCAGCCTCCCTACAGCAGCAGCCATTCAT
AGGACTGGTATGTCACTGCCTTATTCAGCCGCGCTTCTTCGACGTTGCCA
GAATAAACGCAGAATTACTGTCACTGCTGTTGCCGCAACCGCCGTATTTG
GTCTTCCGACCGTCGCGTCCTTTGCATTTGCCTCCCGGCACGTGGGACAG
TACCAGCACCTTCCCAACCTCATTCCTCGCGTGTCATCCCCCATGTCCTC
CACGGCTATTGGCTGCAATGATCGCCCTGCCTCTCTCTCGTCTGCTTTAG
CACCTCCCCCTCTGCCATCCCCTCTCTTCTTCGGCCCCTACGAAATCACG
CCCGATCAGGTTTTTTTCCAATCTCATCACTCCATGGCAATCGTGAATTT
GAAGCCTCTGGTCCCATGCCACGTCCTCATCTTACCTTACCGGGTAGTAG
AGCGGTTCTCGGACCTGAGGCCCGAGGAAGTGAGTGACTTGTACCGGGCA
GTGCATGAAATAGGCCCTGTGCTGCAGACATATCAGAAGAAGCAAGGCTT
GACCATCTCCATGCAAGACGGGAAGGCGGCCGGGCAAACGGTGCCGCACG
TGCACGTGCACGTTCTCCCGCGTCTGGAGGGTGATTTCACGCCCAACGAT
AAAGTGTACGAGGAGCTGGAGGCAGTGCATTTGAAGAAGCACTTCGACCT
GGACGTGGAACGGCGGCCTCGGACGCAGGCAGAAATGGCGGCGGAGGCCT
TAGAACTCCGCAAACTCTTTCCACACCGACAAGGCCGTGCGGAGGGAAAG
GAAGGGGTCTGAGCCGGTATGAAGGAAAGGTCGCGAAAGAAAAATGTCAC
CAAGACGGCTGAGCCGTGTCGTACCCATGACAGGCATCGGCCTAATCTTG
ACGCGGTTGC
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Coding sequence (CDS) from alignment at CM002465.1:244158..245167-

>rna5144 ID=rna5144|Name=rna5144|organism=Nannochloropsis gaditana|type=CDS|length=753bp|location=Sequence derived from alignment at CM002465.1:244158..245167- (Nannochloropsis gaditana)
ATGTCACTGCCTTATTCAGCCGCGCTTCTTCGACGTTGCCAGAATAAACG
CAGAATTACTGTCACTGCTGTTGCCGCAACCGCCGTATTTGGTCTTCCGA
CCGTCGCGTCCTTTGCATTTGCCTCCCGGCACGTGGGACAGTACCAGCAC
CTTCCCAACCTCATTCCTCGCGTGTCATCCCCCATGTCCTCCACGGCTAT
TGGCTGCAATGATCGCCCTGCCTCTCTCTCGTCTGCTTTAGCACCTCCCC
CTCTGCCATCCCCTCTCTTCTTCGGCCCCTACGAAATCACGCCCGATCAG
GTTTTTTTCCAATCTCATCACTCCATGGCAATCGTGAATTTGAAGCCTCT
GGTCCCATGCCACGTCCTCATCTTACCTTACCGGGTAGTAGAGCGGTTCT
CGGACCTGAGGCCCGAGGAAGTGAGTGACTTGTACCGGGCAGTGCATGAA
ATAGGCCCTGTGCTGCAGACATATCAGAAGAAGCAAGGCTTGACCATCTC
CATGCAAGACGGGAAGGCGGCCGGGCAAACGGTGCCGCACGTGCACGTGC
ACGTTCTCCCGCGTCTGGAGGGTGATTTCACGCCCAACGATAAAGTGTAC
GAGGAGCTGGAGGCAGTGCATTTGAAGAAGCACTTCGACCTGGACGTGGA
ACGGCGGCCTCGGACGCAGGCAGAAATGGCGGCGGAGGCCTTAGAACTCC
GCAAACTCTTTCCACACCGACAAGGCCGTGCGGAGGGAAAGGAAGGGGTC
TGA
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Synonyms
Publications