rna5125, rna5125 (mRNA) Nannochloropsis gaditana

Overview
Namerna5125
Unique Namerna5125
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2683
Alignment locationCM002465.1:183288..183536 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100359g4.212.mrna
Orig protein idgnl|cribi|Naga_100359g4.212
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:183288..183536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100359g4gene4946Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5125rna5125-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25560.1cds5113Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5125 ID=rna5125|Name=rna5125|organism=Nannochloropsis gaditana|type=mRNA|length=2683bp
TTCTCAACCATTTATGTTGCACAGGCCCAGCATCCAGGGCCATGGTGTGG
TGCAATGCTTCTCGCAGCGGAGGTGAAGGAGATGATTTGCCGTTGACACA
AGGTGCTGGCACCTGGGAAGGAGGCTACTCAGCCGTCTGCGAGGCTGAAA
CTACACTTCCGAGTATCTCGGAAAGGGTCTCAACGCTGGAAATGCAACCG
GACAGGAATCCTCCCACGATCACGAGGACTGCAAGCAACCTGCGAACAGG
CAATTCATTTTTCAGTGCGGCATCGGCCCTCCCTAGTTGGCCGTGGCGCC
CTGCGCCCGGGCGGAGAGAGAGACAATCTCATCTCCTGTACGCTTCCGTA
CTTTTGGTCGTGGGGGCGTTTTTGCTTGGTGTGGGATTTTGTATCGGTCA
GTCCAGGGCCATCAGCAGCAGGAGTGAAGGCAGTGTCAAATTCTTTCCTC
CCTCGGGGCTTGGCCAGGTCAAAGCCGACTGGCCGACTCACTCCTTGCTT
GGAAACACGTGGTCTCCGCGAGACGTGGAGCCGCTCTTTACCGCCTATCA
CTTTACGGACGCCCATATCGAGCCGTTGTACGATAAACATGTGGTGGTGA
AAGGGAATTGCCGCAAGCCCGATTGTTGCAAGAAGGGGGAAAATGTCTGC
GAAGCTTTTACCTACGACGAATCGGAGCTCCCCACCCTGGGCTGCGACCC
CCCCGTCTCCCTGCTTGAAGGCGTCCTTGAGGCCATGCAGGCCGTGGACC
CTGAGGTCTCTTATGTCCTCTTTACGGGCGACATGAACGCGCACCACCTC
TGCAACGAAGAGCTCGTTCGTACCACCCAAAATGAATTCATGCGCCGGGT
CCACCGGGCGCTACCGCACTTGCCTTTCGTCTACGCAATTGGAAACAACG
ATCTTTGGCCGAACAGCAAAAACTCAGAGCATAACTTCGAAGCTTTGTAT
CAGGTGCAGCTCAAACACTGCCCCCAATGCGCCATATTCCAAGGCACCGA
AGAGGAAAAAGCCGAAAATGCCCGCACCTTCCGCGCCGGCGGTTACTACC
GCTTCCGGGACCATGCCAAGCACGTGCGCATCCTGGTGGTGAACAGCGGG
CTCTGGGCACCGCGTTACGACAACTCGGACCTGCCTGTTGCTCTGCCCGA
CGCCCACATGGACTGGGTGGAGAATGAGCTGGAGGCGGCAAAGGAGGGCG
GGGAGCAGGTGGTTCTCATCTCGCACATTCCCCCCGGCCACGTGAGGCAC
TCGGCGGATTGGAACGAGCGGTTTCTCGACCGTTACATTGCCTTGTGCAC
CCGCTTCGCCGGCACGATCACCGCCCAGCTCTACGGGCACCACAGCAAGG
AATACATTCGGTCCTTTTCACCGGAGGTGGGCGTGCTGGTCTCGGCGGGC
GTGACGCCCTTGGGGGGAGGGTCTTTAACCTACCCGGGGGAGAAAGACGC
GGCCAACCCCACCTTCCGCCATTTGATATTCACAAAATCGGGTAGGCCTT
TGATTGCGTGCTTGCCATGTCGTGGTCCCCGGAGGGAAGACAGGGAGGAG
ATGAACCGTCCGCGCCGTGGGAGCTCAGCCCGTACCAGGACGTCGGGGAT
TCCCCCCCCCGGGGGCCATTGTCGCGGTCCCAGGGCTGAGAGATGAACCC
AAGGCTTCCCTCCCTTCCTTCTTCCTGCCCTCTTTCCCTCCCTTGCCCCA
GGATTTTACGACATGTGGAGTTTCTACCTCGATCTGTCCAGTGGGGAGCG
CGAGCGATTCCTGGGCGAGAAGAGGCCAAGAACCAGCAAGACATCCCCGG
CGACGCCCGGGGAGAAAGCACGGGAGGAAAGTGTTGGGGGTGGATTCCTC
TTCCCCTCCTCCACGCGGAAAGAGAAGGACCGGGAAGCCTTCGTGTCCGC
GCTGGAAAGCGCCGCTGCCGCTACCCCGGTGACGGCCATGGGAAGGGGGG
ACAAGCGTGGGGTCTCGGCCAAGTTCCTGGAGGCAGTGAAGGCAGCGAAC
AGTAAAGGATGGGACCTTATGTACTCCTTCCGCCAGACCTACAAATGCCC
CGATGTCTCCCCCGCCTCCATCCACCTGGCCGCGGACCGGATCCTGCGGG
ACTCGCATTATACGACTCGCTACGAAATGTACCTGGGAGGGTTACATTCC
CCACATCGCCTCATCACTTGTGACGTCCATACCCGGACCTGGGACTCGGA
GGAGGTGGAAACGTGTTTTGATCGGCTCTGTCTGTACGATGTCAGCCAAG
AATGCGCCGCCTTAGAGCCGAAAAAGAAGAAGAAGCACCATCATCAGATG
GTTTGATGTGCTTTTGGAGACAGGAGACGCAAAAAAAGTAGATCGCCGTG
CGGGTTTCGTGAGGGAGAGCGTTGAAAATAATCCCCCGCGCTTTTTGCAG
TGGGGAAAAAAGCTTTTACACCATGGATGCAAACGTCTTCTTCCGATGTT
GCGTATGAGTGTCAAACGAAGACTATTGGATAGTATTTTGGCGGGAAAAT
TATCGGACAAAGTATTCTCCTTCGAGGGAGACCATTGAGACGTGTACATA
AGACCTAAAATAATCGCGGTGAAGAGGCCGGATTTATGTATCTCTCAACG
AGAAAAGACTGACGGGACATGAGCAGGATGAAGGTATCAAAGTTGAGCGT
ACACGGTAAAGAACGAACTGGATGCATTATTTT
back to top

protein sequence of rna5125

>rna5125-protein ID=rna5125-protein|Name=rna5125|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MHFFHVHASEGGMPGIGTTFSSLERVNEADRGILGSLRTQTHKQTNTLLQ
CDGNGEWKAVIFPSLASSLSRVRIAFFDISIL
back to top

mRNA from alignment at CM002465.1:183288..183536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5125 ID=rna5125|Name=rna5125|organism=Nannochloropsis gaditana|type=mRNA|length=249bp|location=Sequence derived from alignment at CM002465.1:183288..183536+ (Nannochloropsis gaditana)
ATGCACTTTTTTCACGTCCATGCATCGGAAGGTGGGATGCCAGGCATTGG
GACAACATTTTCAAGTCTTGAAAGGGTTAACGAAGCCGATAGAGGGATTC
TTGGAAGTTTACGTACACAGACACACAAACAAACAAACACGCTATTGCAA
TGTGATGGAAATGGTGAATGGAAAGCGGtgattttcccctcccttgcgag
ctctctctctcgcgTAAGAATCGCTTTTTTTGATATTAGCATCTTATGA
back to top

Coding sequence (CDS) from alignment at CM002465.1:183288..183536+

>rna5125 ID=rna5125|Name=rna5125|organism=Nannochloropsis gaditana|type=CDS|length=249bp|location=Sequence derived from alignment at CM002465.1:183288..183536+ (Nannochloropsis gaditana)
ATGCACTTTTTTCACGTCCATGCATCGGAAGGTGGGATGCCAGGCATTGG
GACAACATTTTCAAGTCTTGAAAGGGTTAACGAAGCCGATAGAGGGATTC
TTGGAAGTTTACGTACACAGACACACAAACAAACAAACACGCTATTGCAA
TGTGATGGAAATGGTGAATGGAAAGCGGtgattttcccctcccttgcgag
ctctctctctcgcgTAAGAATCGCTTTTTTTGATATTAGCATCTTATGA
back to top
Synonyms
Publications