rna5115, rna5115 (mRNA) Nannochloropsis gaditana

Overview
Namerna5115
Unique Namerna5115
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1568
Alignment locationCM002465.1:161415..161881 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100463g3.3053.mrna
Orig protein idgnl|cribi|Naga_100463g3.3053
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:161415..161881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100463g3gene4938Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5115rna5115-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25572.1cds5103Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5115 ID=rna5115|Name=rna5115|organism=Nannochloropsis gaditana|type=mRNA|length=1568bp
TACCAAGTGATGTTTTGTCCATCATGTGGACGTAGCATGGAATAATAATT
GCTTGTCAAAATATTTACAATTATTCTACCGGATACGCGAACCATTATTC
GTGAGATTGGATTGGATACTTACAGACAATCGTAAGCGTATGTCTGAGCC
TCCAACACACTCTCCTCACTCTTTCAAATATTTATTTGCATGTCACACTA
TGACGGGATAGGTGAGAAAAGATATCAGAAAGGCAACTTCACACGTTGTT
GACGGGGCGTAATCATAGAAGCCCAAGTGCTAAAAGTACTGACCACGAGA
AGTTTGAGCACTTCTGGTTTCGTCGTCATCCTCCTGAATACAAGTGGAGA
CCACCATCGACATACCCGTGTAGTGGCGCATAACGCGTTAAGGCTAGGCT
CCACAGTGGGTGCGGCAGCCTGAGTCTTCGGCGCGCAAACCATTTACATC
ACCTCGTGACGCTGTGGGGTTGGTGGCTGCTGCGCTCTGCGAAACGAAGG
TTTCCTTCCGCACCAAGCTTCCACACTATCAAACAGACACTGAAGCACTT
TGCAGCGTGTTCCGTCCTCACACATATCCTCACGGCGTGTCTCGACGCCG
CCGTTACCGCCAAAAATACCTCCATTGTGGTATCTGAGAAGGCAGGATGA
AAGATTACTACGTTATCCTCCAAGTCTCCAGGTCCGCTACCCTCCAAGAA
ATCAAAGTGGCGTACAAGAATTTTGCCTTGAAGCTGCATCCAGATGTGAC
CGGTAACAATGAGGACAAGACACGGATTTTCAAGCAATTGACAGAAGCCT
ACAACATCCTCTCGGACCAAGATGCCCGGCAAAAATACGACTCCAAGCTG
GGGATATCCCGGGTCTCTACGTTCTATCGCCCCGGAGGCAGTCATCCAGG
GGGCGAAGGCGATATCCGAGCCCCACGGCCCCCGCCAGACTTCAAGATAT
TTGACCACGATGAATGGAACGCTTGGCATTACGGGGAGGGAGAGGGGGTC
CACAAGGAACCGTTCGTCAAGAGGCGGAATCCTTTTATGGACATCAGACC
AGACAACAAAGGCGCGCAGTTCTTCGTACGGCAGAAAACCAAAGAAACCC
AAAGCGTCATAGATCAGTCGTATAAAAGAGGGAAAGCAGAGAAGGATTTG
ATTGTAGAAAGAATGAAGGCACGCAGAGCGGCACGGATGGCAAATCGGGG
ATATAATGAGGACAGTGCCAGTGCCGGAGGCTCCTGTGTGATAGCATGAG
TGGGCTTTCCCATCACTCAAAGATGTGCCCTCCCTGTCGCCGGGGACTCT
GACAAAATGCATTGAAATGCGCATTGAATGTGAAGCGGCATCGACTTGGG
CATTGGGACATGTTGAATACACTGTCTCAAGCGTGCAATAGATAATAGAA
TGTAAAATAGTAGGAAAATGGTTGAAAACATAGCTAACAAGGCTTGACAG
CTTGTCTTTCTCTTTTTTTAAAGTTGCCTTTTAATCGTTTGCCTATCCTG
CATACAGATTGTCAGCCCTACCATGAATCAATTAGTAATGGTAATAATGC
ATGGCGTCTAAATGAGCT
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protein sequence of rna5115

>rna5115-protein ID=rna5115-protein|Name=rna5115|organism=Nannochloropsis gaditana|type=polypeptide|length=91bp
MCLPRHSTLTQNKAALRGKAHRSIDPVKQGTLSHSPTEETLLISASFLPL
PSVKLTRNARDKLFLCLSSALPITWSNEGTISDSCPHMVIS
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mRNA from alignment at CM002465.1:161415..161881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5115 ID=rna5115|Name=rna5115|organism=Nannochloropsis gaditana|type=mRNA|length=467bp|location=Sequence derived from alignment at CM002465.1:161415..161881- (Nannochloropsis gaditana)
ATGTGTCTCCCAAGACATTCAACACTCACTCAAAATAAAGCGGCACTCCG
AGGCAAAGCGCATCGTTCAATAGATGTAGTAGAGAACGGCATGCTCGATA
TTTGTTGGTCTATTTGTCACTTGAAGACGGCATAGGGGAAAACGCCCTTC
AGAAATTGACATATTTTCCAAAACCAGTATGTTTGGCACTCAACATTTCT
TCCCGAGAAGAAATTTAAGCAGATCTGGCTCGATATCCTCACCATGTATG
ACGCTCCTCGCCAAAGCCTGTCAAGCAGGGAACACTCTCTCACAGTCCGA
CAGAGGAAACTCTCCTGATCTCTGCCTCTTTTTTACCTCTTCCTTCCGTA
AAGTTGACGAGAAATGCTCGTGACAAGCTTTTTCTTTGTCTTTCCTCGGC
TCTCCCAATTACATGGTCCAACGAGGGCACGATTTCCGATTCATGCCCAC
ACATGGTCATTTCGTGA
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Coding sequence (CDS) from alignment at CM002465.1:161415..161881-

>rna5115 ID=rna5115|Name=rna5115|organism=Nannochloropsis gaditana|type=CDS|length=552bp|location=Sequence derived from alignment at CM002465.1:161415..161881- (Nannochloropsis gaditana)
CCTGTCAAGCAGGGAACACTCTCTCACAGTCCGACAGAGGAAACTCTCCT
GATCTCTGCCTCTTTTTTACCTCTTCCTTCCGTAAAGTTGACGAGAAATG
CTCGTGACAAGCTTTTTCTTTGTCTTTCCTCGGCTCTCCCAATTACATGG
TCCAACGAGGGCACGATTTCCGATTCATGCCCACACATGGTCATTTCGTG
AATGTGTCTCCCAAGACATTCAACACTCACTCAAAATAAAGCGGCACTCC
GAGGCAAAGCGCATCGTTCAATAGATCCTGTCAAGCAGGGAACACTCTCT
CACAGTCCGACAGAGGAAACTCTCCTGATCTCTGCCTCTTTTTTACCTCT
TCCTTCCGTAAAGTTGACGAGAAATGCTCGTGACAAGCTTTTTCTTTGTC
TTTCCTCGGCTCTCCCAATTACATGGTCCAACGAGGGCACGATTTCCGAT
TCATGCCCACACATGGTCATTTCGTGAATGTGTCTCCCAAGACATTCAAC
ACTCACTCAAAATAAAGCGGCACTCCGAGGCAAAGCGCATCGTTCAATAG
AT
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Synonyms
Publications