rna5110, rna5110 (mRNA) Nannochloropsis gaditana

Overview
Namerna5110
Unique Namerna5110
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2412
Alignment locationCM002465.1:148717..149450 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100572g4.3397.mrna
Orig protein idgnl|cribi|Naga_100572g4.3397
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:148717..149450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100572g4gene4933Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25573.1cds5098Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5110rna5110-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5110 ID=rna5110|Name=rna5110|organism=Nannochloropsis gaditana|type=mRNA|length=2412bp
GAGAGATTCTTTGTTGATGCACTCTCGTGGCTCCCTCCATCCCACCCTTC
GCTCCCCTCCCCCCCGCTTCAGACCTTCCCGGACAAGATTGGTACCGGCA
TGCGTTGCGCAAGCCCGCGCTCTCGGGGGCATCTTGCGTTGGGTGCTACA
ACCCTGCGAACGCGTATACTTCCAAGACATCAGAATACCAAATTTCTTCA
GCCACCCTCCCTCTCCCACTGCTCATGTACATCCGCCTGGCCCACCTCTG
GAGAGAAGGAGGGTACTACACGGATTTCAACGTCTTATGGCATCGCCCCT
TTCCCCCCGCGCGCTACTTCGACGTCTCCCTACGTGCCTGTTCGCCGGTC
GACAAGGAAGGCCTTCAAGCGCATGTAAATGCATTGCAGGAATCCTTCAA
TAGGACAGGGAAAGCACCCCCACAGGAAATGCGGATGTCCTTCCCGACAC
CACCCTCGGGAGCCTTTCCGTCGATGCACATGCATTTCTTAAAGCACGAT
CCCGTCCTAGCGTGCGCCATGCTCGGACTGGGGGACCCGGAGAACGAAAA
ATGCTACGCAGAGAGCGACGATTACGGTCGGGAGTGCGTCATCGCCATTA
TGAACAGATGCATCGTCCAAGAGAACACCTTTCTGGCTGAGAAAGAGCTC
TGCGTCATACAGGAACGAAAGTCGCAGAGGCAACTGCCCGCTTCTTCGTC
CTCCTCCTCGCGGGCGCCTTGCCCCCCCTCACACTACAGCACGATGCGCG
TGCGACAAGGCCATATCGTCGAGTGGTTCAATTGCGACCTGAGGGCGGGC
ATGTCACTTCCGTTGGCGGACGATTGGAGGCAGGACCCCCGTGTGATCCG
CTCGCACGCCTTGTGGATGGGCCCGTACGTCAGCATGGGTGTCATCCCCA
CGCCTACCTCCATGTTTCGGTGGGATAACCCTTTCTCCATCCCGTCCACC
CACCCGGACTCCCTGTACGCCCGCGCAACTGCCGACGTGATTGCGTTGCA
CAGTTGGGCTCCTGCACAGTCCTGTCCCAAATTGGGGTTGGAGGCTGGGG
TGCAGAAGGCAGCGGAAGGGAGATGTACCTATTCGGAGTACATCGAGGGC
ACCCGGATCTGTGCGCCGTCGTTCTTTATCCCCGGGGTGCAAAAAGGGGC
GTCGACCTTCCTCTTTGCGAAGTTGAGCCGGCATCCGCAAGTGCTCCAGC
CCATCGCCGGGTCGCAATATAAGGAGGTCGGCACGTATACCACACGCCGG
GAACGGTACCCTTACCGCAGCGAGTTCTTTCCCTATACAGCGCCAGGGGA
ACCTTTCCATGTCGGAGACGCCTCGGTGCCCTACGTTTCCAGCTTGCAGG
CTCCTGAGCTGATTTTGAAAGACAATCCTCGCGCCAAATTTTTGTTTTCC
CTTCGCGATCCAGTGCTTCGTGCCTGGAGCGACTATAGATTCCAGAAACC
TCTTTACAGTACAAAGGGTTGGACCTTCAAGGAGGTCGTTCGAAAAAGCA
TCCAAGAATTGCAGGACTGTTGTGCGCAGATTCCTGAAATTAAGCCCGAA
GATGACCCTCAAGGCAAAAAGGTAGAAAAGGAAAAGTCAGCCAAAAAAGC
TCGGCAGCAAAAGAAGCGAATGAGTCGAGATTTGCGAGAGGAGAATCAAA
ATCACTGCGAAAGATTGGATGCTTACGCCTTTTCTCGCTGCAACCAGTCC
GATCCGGGACGCATCGTTTCTCGAGGTCTGTACGTCATTTTTATCAATCA
TTACCTAGAGCACGTCGCCGCGGACAATTTGCACGTTGTGACAGTAGAAG
AAATGAAGGAAAATCCAGTCATGACCCTCGGTCGCGCGGCCGCTTTTTTG
GAGCTCTGTCCGTACGATTGGAACCGCGAAGACCTCGATCCTGTCCACGT
CACTGGGTACAAGGGACCGGCGAAGGAGGATGGGGGGCTTGACGAGGAGA
TAGAGAGGGAACTCCGGGCGTTCTACCGTCCGTTCAATGCCAGGCTTTAC
GAAGTCCTTGGACGGAATCTAGGGTGGGATAAGGAGGACAGGAACGCGTC
TATGGAAGGGACCGGGAGAAGGTAGGATGTAAGACTAGCAAATACATAAT
ATGTGGAGCTTTGCATGGAAAGGGTACAGCAATTCTACTTTTCTTGACCC
GAAACCATACTTTTGGGCTGCGCACGAGCCGTGAACTACGCTCTGCGGCG
TTGCATTTCACGTAACATGAAGGACGCATACATTGAAGAACAAAAATAAT
CAGCAAGGCACACGTTCGTGACTTTGCCAGCGACGGTAGGAATAGATTTA
GGGGAAAAGTATCAGGAAAGTCCACAGTTGGGCCGAGCGTATTTTTCAAA
AGCAACAACAGGACCTTGCAGACGTTCCATTTCGAATGAATGCACTTCAA
TTTCTGCTTTGA
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protein sequence of rna5110

>rna5110-protein ID=rna5110-protein|Name=rna5110|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MSLLTSVHTMRRSYLTSFLLLLGVTFINLLVLICWTHFSGSTHEPYFHLP
RPWDPASKTAGGAQEGGVSRRTAAVSKEEVVRVFMDFPQSRASWGIAHNR
ALESILSHYPRAEVVVFGNGSK
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mRNA from alignment at CM002465.1:148717..149450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5110 ID=rna5110|Name=rna5110|organism=Nannochloropsis gaditana|type=mRNA|length=734bp|location=Sequence derived from alignment at CM002465.1:148717..149450- (Nannochloropsis gaditana)
CCGTGAGATGTCCCGCATATTCGGAGGGCTTTTTCTGTCTCGTAAGCTGT
AATTTTGCCGCGAAACCCGTATTCAGGTACCGGGAGAGCGCTTTGTCAAA
GATCATGCAGGCAGGATTTGGCATCAGGCGTGAAGACTTGACTTTCGGCA
TACCAAGAATGAGGAACATTAAGTTACGGCATTCGTTTCCTTTTCATCGT
ACATATTACTCAGCACGGTCACGATTCACGGTTTTGTACGCATGCGGGCT
GAAAGCTTCTTCGATCCGGAAACAAGGTGGATGAAAGACATGCATCCAGG
AAGGATCTCGATTTAGTCGACCTGGCAGGCCTTGAGATCCGGCACTCTAC
CTTTGCACATTTCTGATGTCGCTTCTCACATCCGTCCACACAATGAGACG
GTCTTACCTGACGTCTTTCCTCCTCCTGCTGGGCGTGACTTTTATCAACC
TATTGGTACTTATATGCTGGACGCATTTCTCAGGCTCGACGCACGAACCC
TATTTCCATCTGCCACGACCATGGGATCCGGCCTCGAAGACAGCGGGAGG
GGCACAGGAGGGAGGAGTTTCGAGGAGGACGGCAGCAGTATCCAAGGAGG
AGGTCGTCCGCGTGTTCATGGATTTCCCACAGTCGCGGGCGAGTTGGGGC
ATTGCCCACAATCGTGCTTTGGAAAGCATCCTCAGTCATTATCCGCGAGC
GGAAGTGGTGGTTTTTGGTAACGGTTCCAAGTAA
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Coding sequence (CDS) from alignment at CM002465.1:148717..149450-

>rna5110 ID=rna5110|Name=rna5110|organism=Nannochloropsis gaditana|type=CDS|length=369bp|location=Sequence derived from alignment at CM002465.1:148717..149450- (Nannochloropsis gaditana)
ATGTCGCTTCTCACATCCGTCCACACAATGAGACGGTCTTACCTGACGTC
TTTCCTCCTCCTGCTGGGCGTGACTTTTATCAACCTATTGGTACTTATAT
GCTGGACGCATTTCTCAGGCTCGACGCACGAACCCTATTTCCATCTGCCA
CGACCATGGGATCCGGCCTCGAAGACAGCGGGAGGGGCACAGGAGGGAGG
AGTTTCGAGGAGGACGGCAGCAGTATCCAAGGAGGAGGTCGTCCGCGTGT
TCATGGATTTCCCACAGTCGCGGGCGAGTTGGGGCATTGCCCACAATCGT
GCTTTGGAAAGCATCCTCAGTCATTATCCGCGAGCGGAAGTGGTGGTTTT
TGGTAACGGTTCCAAGTAA
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Synonyms
Publications