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Properties
| Property Name | Value |
|---|
| Product | ca2 :cation antiporter family |
| Orig transcript id | gnl|cribi|Naga_100614g3.1301.mrna |
| Orig protein id | gnl|cribi|Naga_100614g3.1301 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:140472..142509 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5108 ID=rna5108|Name=rna5108|organism=Nannochloropsis gaditana|type=mRNA|length=441bp
ATGCTTTCTGCATCGATATATAGGACCAAAAGTCTGAGAACAGGCGTGTC
TCAGAGTAACGCCTTGAGAGCTGCATATTTCCATCAACGGGCCACTTTAA
GTGTCCTCGGAGAAAGCCAGCATCATAAAGCCAGCATAGGCACAAAACCC
ACGAGTATACACAATAGAGGCCTAATTGACGCCGAAAAATGCCAGCGGGT
CCCAATGTGCGGCGAGAGAGGTCTCCCAGCTCCCCCGTCACCCCCAATTC
GACTCAGCCCCCCGGGGCAGACACAGGATGCAATGGGAACGGTTCCATCG
ACAAAAGTGGAGGGACACGGGACAGGCAGCACAGAGCGCATCGAAAAGGA
TGTACCGCGACGGAGACGGTCTCTCGGCGCGAAAGCAACGAGTCCCTCGA
TGAGTCCCTCTCGTGCTCTACCCCCAAAGTCGCCCTGGTAA back to topprotein sequence of rna5108 >rna5108-protein ID=rna5108-protein|Name=rna5108|organism=Nannochloropsis gaditana|type=polypeptide|length=397bp
FAEMVIGVQALSHGEIRVVQASLLGSILSNLLLITGSCFLVGGIIHKEQR
FNSMAGVANLSLLFLACLALVIPTPIGHTYKLSKAHILLISRVAAFFLLS
MYLQLIVFQLVTHKHLFEGEHQGGGEGEEEEDVEGGNGKVRVIQAGYRLS
IQLILPPSLLPSLPPPSLPPQTVLTLNVEPAFPPSLSGLPAEPFHCPHHT
HYVCDAVGLSHSQHTHSGSCDAAAGTLEEVDDGDEDHVDLGLWGSMAGLL
VVALIVSFFSNLVVTSIDGMSDAYGMSKTFVGVILLPLVGNATEHMTAVT
VAAKNRMELAMGIAVGSSTQIALLVIPSLTLAGWALGQDMTLEFPPIEII
ALIMSLIVVQPVLLNAQSNWLLGSLLITAYGFCGFAFFFEKPPLPGE back to topmRNA from alignment at CM002465.1:140472..142509+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5108 ID=rna5108|Name=rna5108|organism=Nannochloropsis gaditana|type=mRNA|length=2038bp|location=Sequence derived from alignment at CM002465.1:140472..142509+ (Nannochloropsis gaditana)
TTTGCAGAGATGGTGATCGGCGTTCAGGCCCTCTCTCACGGAGAGATCCG
CGTCGttcaagcctccctcctgggctCCATCCTCTCGAATTTGTTGTTGA
TCACGGGCTCGTGTTTTTTGGTGGGCGGGATTATCCACAAGGAACAGCGC
TTCAACAGCATGGCTGGGGTGGCTaatctctccctcttgttcTTGGCCTG
TCTGGCCCTGGTCATCCCCACGCCCATCgggtgcgggagggagggcggga
gggagggcgggaacaGACAGGGCAGGAACAGGCAGGGTAgataggaggga
aagagacgaATCGAGGGGCACAACGCCATGTTTTCCAACCTTAAAGGATC
AATCAGGACGCCCATggccccccttccgccccttcctccccacccctctc
cctcagaCACACCTACAAGCTCAGCAAGgcccacatcctcctcatctccc
gGGTGgcggctttcttcctcctgtccatGTATTTGCAGCTCATCGTCTTC
CAACTCGTCACCCACAAGCATTTGTTCGAGGGGGAgcaccagggcggggg
ggagggagaggaggaggaggacgtggagggtgGCAACGGCAAGGTGCGTG
TGATTCAGGCAGGATATCGCCTCTCTATCCagctcatcctccctccttcc
ctccttccctccctccctcccccctccctgcccccacaGACCGTCCTGAC
CCTCAACGTGGaacccgccttccctccctccctgtcggGGCTGCCGGCGG
AACCTTTCCACTGCCCGCACCACACCCACTACGTCTGCGACGCCGTGGGC
CTCAGCCACAGCCAGCACACCCACTCCGGCTCCTGcgacgcggcggcggg
gactctggaggaggtggacgacggGGATGAGGACCATGTGGACTTGGGCC
TGTGGGGGTCGATGGCCGGCCTTTTGGTCGTCGCGCTCATCGTCTCATTC
TTCTCCAACCTGGTGGTCACGTCCATCGATGGCATGAGTGATGCGTATGG
GATGAGCAAGACCTTCGTGGGCGTCATTCTCTTGCCGCTGGTGGGAAATG
CCACCGAGCACATGACCGCaggtgagggaaagcggagggagggagggaag
gagggagggcaggctgGGTGGTTCGGCTGGCGGGATAGGACGTGTGTTTG
CTGCACGATGTCTAACGAAGTGCATCCACTTGTCTCTCAAAAACCTTTGG
AAATGAGAACATCTGCTCAGATGGAGCATTTTATAAGGGCTTTGGGGGCC
AGGACTGACGCATttttgggaaaagaaaaacatCACGCCCCCCGACGCGC
GCGGCATGCTCATGTCATGATCTTCCCTGATGCCTTCTCCCTTCATGCGC
CCCGGTCCACAGTCACGGTCGCGGCCAAGAACAGGATGGAGCTGGCGATG
GGCATTGCGGTCGGTAGCTCGACCCAGATCGCCCTCTTGGTCATCCCGTC
CCTCACGCTCGCAGGCTGGGCCTTGGGGCAGGACATGACGCTTGAATTCC
CGCCCATTGAGGTAGGTAACCTCCTTGTGCATCCACATTTCGTACGAAAA
AGACGAAGGCCCCTGGAAAGCccgatccttcctccttgccatgTCAACCT
CTGATCGCTCTGCCCTTTTTTCCACCAGATAATCGCATTGATCATGAGCC
TGATTGTCGTCCAGCCGGTCTTGCTCAACGCGCAATCCAATTGGTTGTTA
GGGTCCTTGCTTATTACCGCCTACGGCTTCTGCGGtttcgccttcttctt
cgagaAGCCACCGTTACCCGGCGAGTAAGATCACGCCGAATACTCTAGGA
GAACGTCAAGGTGACATGTCGACAGGGTAGCAGTCAAAGAGTCTCCACAG
GGTGTTTTGGGAATttaagagggagaaaaaaggaggaaaaaaacgCACAG
AAAAACGCATGGTCCGCGATAAGTAAGTTTGGTCGAGGTGAGCAATAAAC
GTCCCGCGCCTAAATCGTTGTGCAGGGATGTCGCGCTCCCGGAGCGCCAG
TAGTCAAAGCAGAAATTGAAGTGCATTCATTCGAAATG back to topCoding sequence (CDS) from alignment at CM002465.1:140472..142509+ >rna5108 ID=rna5108|Name=rna5108|organism=Nannochloropsis gaditana|type=CDS|length=4776bp|location=Sequence derived from alignment at CM002465.1:140472..142509+ (Nannochloropsis gaditana)
TTTGCAGAGATGGTGATCGGCGTTCAGGCCCTCTCTCACGGAGAGATCCG
CGTCGttcaagcctccctcctgggctCCATCCTCTCGAATTTGTTGTTGA
TCACGGGCTCGTGTTTTTTGGTGGGCGGGATTATCCACAAGGAACAGCGC
TTCAACAGCATGGCTGGGGTGGCTaatctctccctcttgttcTTGGCCTG
TCTGGCCCTGGTCATCCCCACGCCCATCggaCACACCTACAAGCTCAGCA
AGgcccacatcctcctcatctcccgGGTGgcggctttcttcctcctgtcc
atGTATTTGCAGCTCATCGTCTTCCAACTCGTCACCCACAAGCATTTGTT
CGAGGGGGAgcaccagggcgggggggagggagaggaggaggaggacgtgg
agggtgGCAACGGCAAGGTGCGTGTGATTCAGGCAGGATATCGCCTCTCT
ATCCagctcatcctccctccttccctccttccctccctccctcccccctc
cctgcccccacaGACCGTCCTGACCCTCAACGTGGaacccgccttccctc
cctccctgtcggGGCTGCCGGCGGAACCTTTCCACTGCCCGCACCACACC
CACTACGTCTGCGACGCCGTGGGCCTCAGCCACAGCCAGCACACCCACTC
CGGCTCCTGcgacgcggcggcggggactctggaggaggtggacgacggGG
ATGAGGACCATGTGGACTTGGGCCTGTGGGGGTCGATGGCCGGCCTTTTG
GTCGTCGCGCTCATCGTCTCATTCTTCTCCAACCTGGTGGTCACGTCCAT
CGATGGCATGAGTGATGCGTATGGGATGAGCAAGACCTTCGTGGGCGTCA
TTCTCTTGCCGCTGGTGGGAAATGCCACCGAGCACATGACCGCagTCACG
GTCGCGGCCAAGAACAGGATGGAGCTGGCGATGGGCATTGCGGTCGGTAG
CTCGACCCAGATCGCCCTCTTGGTCATCCCGTCCCTCACGCTCGCAGGCT
GGGCCTTGGGGCAGGACATGACGCTTGAATTCCCGCCCATTGAGATAATC
GCATTGATCATGAGCCTGATTGTCGTCCAGCCGGTCTTGCTCAACGCGCA
ATCCAATTGGTTGTTAGGGTCCTTGCTTATTACCGCCTACGGCTTCTGCG
GtttcgccttcttcttcgagaAGCCACCGTTACCCGGCGAGTAATTTGCA
GAGATGGTGATCGGCGTTCAGGCCCTCTCTCACGGAGAGATCCGCGTCGt
tcaagcctccctcctgggctCCATCCTCTCGAATTTGTTGTTGATCACGG
GCTCGTGTTTTTTGGTGGGCGGGATTATCCACAAGGAACAGCGCTTCAAC
AGCATGGCTGGGGTGGCTaatctctccctcttgttcTTGGCCTGTCTGGC
CCTGGTCATCCCCACGCCCATCggaCACACCTACAAGCTCAGCAAGgccc
acatcctcctcatctcccgGGTGgcggctttcttcctcctgtccatGTAT
TTGCAGCTCATCGTCTTCCAACTCGTCACCCACAAGCATTTGTTCGAGGG
GGAgcaccagggcgggggggagggagaggaggaggaggacgtggagggtg
GCAACGGCAAGGTGCGTGTGATTCAGGCAGGATATCGCCTCTCTATCCag
ctcatcctccctccttccctccttccctccctccctcccccctccctgcc
cccacaGACCGTCCTGACCCTCAACGTGGaacccgccttccctccctccc
tgtcggGGCTGCCGGCGGAACCTTTCCACTGCCCGCACCACACCCACTAC
GTCTGCGACGCCGTGGGCCTCAGCCACAGCCAGCACACCCACTCCGGCTC
CTGcgacgcggcggcggggactctggaggaggtggacgacggGGATGAGG
ACCATGTGGACTTGGGCCTGTGGGGGTCGATGGCCGGCCTTTTGGTCGTC
GCGCTCATCGTCTCATTCTTCTCCAACCTGGTGGTCACGTCCATCGATGG
CATGAGTGATGCGTATGGGATGAGCAAGACCTTCGTGGGCGTCATTCTCT
TGCCGCTGGTGGGAAATGCCACCGAGCACATGACCGCagTCACGGTCGCG
GCCAAGAACAGGATGGAGCTGGCGATGGGCATTGCGGTCGGTAGCTCGAC
CCAGATCGCCCTCTTGGTCATCCCGTCCCTCACGCTCGCAGGCTGGGCCT
TGGGGCAGGACATGACGCTTGAATTCCCGCCCATTGAGATAATCGCATTG
ATCATGAGCCTGATTGTCGTCCAGCCGGTCTTGCTCAACGCGCAATCCAA
TTGGTTGTTAGGGTCCTTGCTTATTACCGCCTACGGCTTCTGCGGtttcg
ccttcttcttcgagaAGCCACCGTTACCCGGCGAGTAATTTGCAGAGATG
GTGATCGGCGTTCAGGCCCTCTCTCACGGAGAGATCCGCGTCGttcaagc
ctccctcctgggctCCATCCTCTCGAATTTGTTGTTGATCACGGGCTCGT
GTTTTTTGGTGGGCGGGATTATCCACAAGGAACAGCGCTTCAACAGCATG
GCTGGGGTGGCTaatctctccctcttgttcTTGGCCTGTCTGGCCCTGGT
CATCCCCACGCCCATCggaCACACCTACAAGCTCAGCAAGgcccacatcc
tcctcatctcccgGGTGgcggctttcttcctcctgtccatGTATTTGCAG
CTCATCGTCTTCCAACTCGTCACCCACAAGCATTTGTTCGAGGGGGAgca
ccagggcgggggggagggagaggaggaggaggacgtggagggtgGCAACG
GCAAGGTGCGTGTGATTCAGGCAGGATATCGCCTCTCTATCCagctcatc
ctccctccttccctccttccctccctccctcccccctccctgcccccaca
GACCGTCCTGACCCTCAACGTGGaacccgccttccctccctccctgtcgg
GGCTGCCGGCGGAACCTTTCCACTGCCCGCACCACACCCACTACGTCTGC
GACGCCGTGGGCCTCAGCCACAGCCAGCACACCCACTCCGGCTCCTGcga
cgcggcggcggggactctggaggaggtggacgacggGGATGAGGACCATG
TGGACTTGGGCCTGTGGGGGTCGATGGCCGGCCTTTTGGTCGTCGCGCTC
ATCGTCTCATTCTTCTCCAACCTGGTGGTCACGTCCATCGATGGCATGAG
TGATGCGTATGGGATGAGCAAGACCTTCGTGGGCGTCATTCTCTTGCCGC
TGGTGGGAAATGCCACCGAGCACATGACCGCagTCACGGTCGCGGCCAAG
AACAGGATGGAGCTGGCGATGGGCATTGCGGTCGGTAGCTCGACCCAGAT
CGCCCTCTTGGTCATCCCGTCCCTCACGCTCGCAGGCTGGGCCTTGGGGC
AGGACATGACGCTTGAATTCCCGCCCATTGAGATAATCGCATTGATCATG
AGCCTGATTGTCGTCCAGCCGGTCTTGCTCAACGCGCAATCCAATTGGTT
GTTAGGGTCCTTGCTTATTACCGCCTACGGCTTCTGCGGtttcgccttct
tcttcgagaAGCCACCGTTACCCGGCGAGTAATTTGCAGAGATGGTGATC
GGCGTTCAGGCCCTCTCTCACGGAGAGATCCGCGTCGttcaagcctccct
cctgggctCCATCCTCTCGAATTTGTTGTTGATCACGGGCTCGTGTTTTT
TGGTGGGCGGGATTATCCACAAGGAACAGCGCTTCAACAGCATGGCTGGG
GTGGCTaatctctccctcttgttcTTGGCCTGTCTGGCCCTGGTCATCCC
CACGCCCATCggaCACACCTACAAGCTCAGCAAGgcccacatcctcctca
tctcccgGGTGgcggctttcttcctcctgtccatGTATTTGCAGCTCATC
GTCTTCCAACTCGTCACCCACAAGCATTTGTTCGAGGGGGAgcaccaggg
cgggggggagggagaggaggaggaggacgtggagggtgGCAACGGCAAGG
TGCGTGTGATTCAGGCAGGATATCGCCTCTCTATCCagctcatcctccct
ccttccctccttccctccctccctcccccctccctgcccccacaGACCGT
CCTGACCCTCAACGTGGaacccgccttccctccctccctgtcggGGCTGC
CGGCGGAACCTTTCCACTGCCCGCACCACACCCACTACGTCTGCGACGCC
GTGGGCCTCAGCCACAGCCAGCACACCCACTCCGGCTCCTGcgacgcggc
ggcggggactctggaggaggtggacgacggGGATGAGGACCATGTGGACT
TGGGCCTGTGGGGGTCGATGGCCGGCCTTTTGGTCGTCGCGCTCATCGTC
TCATTCTTCTCCAACCTGGTGGTCACGTCCATCGATGGCATGAGTGATGC
GTATGGGATGAGCAAGACCTTCGTGGGCGTCATTCTCTTGCCGCTGGTGG
GAAATGCCACCGAGCACATGACCGCagTCACGGTCGCGGCCAAGAACAGG
ATGGAGCTGGCGATGGGCATTGCGGTCGGTAGCTCGACCCAGATCGCCCT
CTTGGTCATCCCGTCCCTCACGCTCGCAGGCTGGGCCTTGGGGCAGGACA
TGACGCTTGAATTCCCGCCCATTGAGATAATCGCATTGATCATGAGCCTG
ATTGTCGTCCAGCCGGTCTTGCTCAACGCGCAATCCAATTGGTTGTTAGG
GTCCTTGCTTATTACCGCCTACGGCTTCTGCGGtttcgccttcttcttcg
agaAGCCACCGTTACCCGGCGAGTAA back to top
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