rna5107, rna5107 (mRNA) Nannochloropsis gaditana

Overview
Namerna5107
Unique Namerna5107
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1094
Alignment locationCM002465.1:139476..140358 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101289g1.10589.mrna
Orig protein idgnl|cribi|Naga_101289g1.10589
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:139476..140358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101289g1gene4930Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5107rna5107-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25578.1cds5095Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5107 ID=rna5107|Name=rna5107|organism=Nannochloropsis gaditana|type=mRNA|length=1094bp
TCGACGGGCTCTGCAGCGACCGACGGATCCTGCCCAACGTCGATGGCTTT
GCCGAATACAAGGCTCCCAAGGACGGGCTGGACGTGATGATATGGGCCGG
CTTTGCGGCCAAACACGGGGCGGTCACCGTGACGCAGGGTTTCCTTCTCA
AAGGTAAGCAGGAGAGCGGGGGGGAAGGAAAGGGGAGGGAAAGTGTGGGG
TGTTAAGACTGGGGGGCAGCGAAGGAATGATGGATTTGGATGGTGTCATG
GATGGTGGGAGGCCTCTGTGGGGCTCAAGATCTCTGGCCGTCCTTTCTCT
CTCCCTGGCTTTACCGACTCAACCTGCCCGCCTGTCCTCCCTCCCTCTCT
CCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCAGGTGCCAAGGGCAC
GCGCGCTTTTCCCCCGGGAGTGGTTCCTCCCCCACCCTCTGCCTCCACCA
CCAACGTGGCCAAGAAAGGAGGCGCTGCTGGGAAGACCGGCACAGATCCT
GCCAAGGAGGAAAACGAGGGGCGGCTCCGGGGGGGAATGTAGTCGTATGG
GGGCAGGGATTAGAGAGAAGAAGGAAGAAGGGGGCGGGAGTGTACATGTC
AGGCTGTATACCGACGGCGAAGAATCAAGCACTGTTCGAAGAACATCCAA
CAAAGAGGTGACTCGCGATCAAAGTATAAGAAAAGCTTGAGGGTAGCACG
GAATGGGTTGATGAATTGGGAGGGTCTACGAGGCAGGTTACACAAAAAAA
GAGACGGGACACAATGGAGAAATCCGAAAAGAATATTAGGTAATGTGCAT
GGTAAAAAAGAATAGATGCATCGTGGAACGAAGGATTCGACGGCTGCTAC
CGAGGATCAAGGCCGTTTGAAACGGATAGCACGGATGGTTCAGACCAGCA
CTGTATGATTTCATCATGATCGGTCAGATCGAAAAAAGACTGCAACAAAC
AAGATAGATGTTATCACTTTCGTTCTTTGTGCGCCTCAAGTGTCATCTGC
AATCTTCTGCCTTAGGTGATAGCTCAAGGCGGTACTGCGATGACGACAAA
TATCTGCAGCAGTTACCCCTTGCTTAACTTGATTAGCAATGCTG
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protein sequence of rna5107

>rna5107-protein ID=rna5107-protein|Name=rna5107|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MLSASIYRTKSLRTGVSQSNALRAAYFHQRATLSVLGESQHHKASIGTKP
TSIHNRGLIDAEKCQRVPMCGERGLPAPPSPPIRLSPPGQTQDAMGTVPS
TKVEGHGTGSTERIEKDVPRRRRSLGAKATSPSMSPSRALPPKSPW
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mRNA from alignment at CM002465.1:139476..140358+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5107 ID=rna5107|Name=rna5107|organism=Nannochloropsis gaditana|type=mRNA|length=883bp|location=Sequence derived from alignment at CM002465.1:139476..140358+ (Nannochloropsis gaditana)
ATGCTTTCTGCATCGATATATAGGACCAAAAGTCTGAGAACAGGCGTGTC
TCAGAGTAACGCCTTGAGAGCTGCATATTTCCATCAACGGGCCACTTTAA
GTGTCCTCGGAGAAAGCCAGCATCATAAAGCCAGCATAGGCACGTGCGCA
CGCTAAAGACAGCGCATGATCCTGGCAGGCGGAAAAGAAAACCCACGAGT
ATACACAATAGAGGCCTAATTGACGCCGAAAAATGCCAGCGGGTCCCAAT
GTGCGGCGAGAGAGGTCTCCCAGCTCCCCCGTCACCCCCAATTCGACTCA
GCCCCCCGGGGCAGACACAGGATGCAATGGGAACGGTTCCATCGACAAAA
GTGGAGGGACACGGGACAGGTACGTTCTCAGTGCATTGCTCATGTTCTTA
TTTACATGACTGAATGGACACAAGGAAACAAATGAAAGCATGTGTGCGGG
ATGGGAGAAAGACGGTGATGTGTTGACACGGGAAAGTGATGTGTgttgta
tatatatataaatCGTGGGAGTATGATGCAGGCGATGAAGCCGATggcga
cagggagggatatggagaaggggacgcCACGGGGTGCACCGCATGATGGG
ACAGGACGGAGACGAGAGCTCCTCTTGTTGTAGCGTTCGAGTTGCAAGCA
ACCACCTCCCACAACAGCCACTGAGCGGTCGTGGCACTCAGCCTGGACAC
TCCATTTcctatcccctccccccggggcccgtacctccttcttcccttcc
tttcccctcgtaCTCAGGCAGCACAGAGCGCATCGAAAAGGATGTACCGC
GACGGAGACGGTCTCTCGGCGCGAAAGCAACGAGTCCCTCGATGAGTCCC
TCTCGTGCTCTACCCCCAAAGTCGCCCTGGTAA
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Coding sequence (CDS) from alignment at CM002465.1:139476..140358+

>rna5107 ID=rna5107|Name=rna5107|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at CM002465.1:139476..140358+ (Nannochloropsis gaditana)
ATGCTTTCTGCATCGATATATAGGACCAAAAGTCTGAGAACAGGCGTGTC
TCAGAGTAACGCCTTGAGAGCTGCATATTTCCATCAACGGGCCACTTTAA
GTGTCCTCGGAGAAAGCCAGCATCATAAAGCCAGCATAGGCACAAAACCC
ACGAGTATACACAATAGAGGCCTAATTGACGCCGAAAAATGCCAGCGGGT
CCCAATGTGCGGCGAGAGAGGTCTCCCAGCTCCCCCGTCACCCCCAATTC
GACTCAGCCCCCCGGGGCAGACACAGGATGCAATGGGAACGGTTCCATCG
ACAAAAGTGGAGGGACACGGGACAGGCAGCACAGAGCGCATCGAAAAGGA
TGTACCGCGACGGAGACGGTCTCTCGGCGCGAAAGCAACGAGTCCCTCGA
TGAGTCCCTCTCGTGCTCTACCCCCAAAGTCGCCCTGGTAAATGCTTTCT
GCATCGATATATAGGACCAAAAGTCTGAGAACAGGCGTGTCTCAGAGTAA
CGCCTTGAGAGCTGCATATTTCCATCAACGGGCCACTTTAAGTGTCCTCG
GAGAAAGCCAGCATCATAAAGCCAGCATAGGCACAAAACCCACGAGTATA
CACAATAGAGGCCTAATTGACGCCGAAAAATGCCAGCGGGTCCCAATGTG
CGGCGAGAGAGGTCTCCCAGCTCCCCCGTCACCCCCAATTCGACTCAGCC
CCCCGGGGCAGACACAGGATGCAATGGGAACGGTTCCATCGACAAAAGTG
GAGGGACACGGGACAGGCAGCACAGAGCGCATCGAAAAGGATGTACCGCG
ACGGAGACGGTCTCTCGGCGCGAAAGCAACGAGTCCCTCGATGAGTCCCT
CTCGTGCTCTACCCCCAAAGTCGCCCTGGTAAATGCTTTCTGCATCGATA
TATAGGACCAAAAGTCTGAGAACAGGCGTGTCTCAGAGTAACGCCTTGAG
AGCTGCATATTTCCATCAACGGGCCACTTTAAGTGTCCTCGGAGAAAGCC
AGCATCATAAAGCCAGCATAGGCACAAAACCCACGAGTATACACAATAGA
GGCCTAATTGACGCCGAAAAATGCCAGCGGGTCCCAATGTGCGGCGAGAG
AGGTCTCCCAGCTCCCCCGTCACCCCCAATTCGACTCAGCCCCCCGGGGC
AGACACAGGATGCAATGGGAACGGTTCCATCGACAAAAGTGGAGGGACAC
GGGACAGGCAGCACAGAGCGCATCGAAAAGGATGTACCGCGACGGAGACG
GTCTCTCGGCGCGAAAGCAACGAGTCCCTCGATGAGTCCCTCTCGTGCTC
TACCCCCAAAGTCGCCCTGGTAA
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Synonyms
Publications