rna5106, rna5106 (mRNA) Nannochloropsis gaditana

Overview
Namerna5106
Unique Namerna5106
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length903
Alignment locationCM002465.1:136010..137268 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101188g2.6428.mrna
Orig protein idgnl|cribi|Naga_101188g2.6428
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:136010..137268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101188g2gene4929Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25580.1cds5094Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5106rna5106-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5106 ID=rna5106|Name=rna5106|organism=Nannochloropsis gaditana|type=mRNA|length=903bp
CCGGCAGTCCCGGCTGTGTTCGAGGCCGTGGGGGGGGGCTTCGTCGACGG
GCTCTGCAGCGACCGACGGATCCTGCCCAACGTCGATGGCTTTGCCGAAT
ACAAGGCTCCCAAGGACGGGCTGGACGTGATGATATGGGCCGGCTTTGCG
GCCAAACACGGGGCGGTCACCGTGACGCAGGGTTTCCTTCTCAAAGGTGC
CAAGGGCACGCGCGCTTTTCCCCCGGGAGTGGTTCCTCCCCCACCCTCTG
CCTCCACCACCAACGTGGCCAAGAAAGGAGGCGCTGCTGGGAAGACCGGC
ACAGATCCTGCCAAGGAGGAAAACGAGGGGCGGCTCCGGGGGGGAATGTA
GTCGTATGGGGGCAGGGATTAGAGAGAAGAAGGAAGAAGGGGGCGGGAGT
GTACATGTCAGGCTGTATACCGACGGCGAAGAATCAAGCACTGTTCGAAG
AACATCCAACAAAGAGGTGACTCGCGATCAAAGTATAAGAAAAGCTTGAG
GGTAGCACGGAATGGGTTGATGAATTGGGAGGGTCTACGAGGCAGGTTAC
ACAAAAAAAGAGACGGGACACAATGGAGAAATCCGAAAAGAATATTAGGT
AATGTGCATGGTAAAAAAGAATAGATGCATCGTGGAACGAAGGATTCGAC
GGCTGCTACCGAGGATCAAGGCCGTTTGAAACGGATAGCACGGATGGTTC
AGACCAGCACTGTATGATTTCATCATGATCGGTCAGATCGAAAAAAGACT
GCAACAAACAAGATAGATGTTATCACTTTCGTTCTTTGTGCGCCTCAAGT
GTCATCTGCAATCTTCTGCCTTAGGTGATAGCTCAAGGCGGTACTGCGAT
GACGACAAATATCTGCAGCAGTTACCCCTTGCTTAACTTGATTAGCAATG
CTG
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protein sequence of rna5106

>rna5106-protein ID=rna5106-protein|Name=rna5106|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MMDLDGVMDGGRPLWGSRSLAVLSLSLALPTQPARLSSLPLSLPPSLPPS
LPRRCQGHARFSPGSGSSPTLCLHHQRGQERRRCWEDRHRSCQGGKRGAA
PGGNVVVWGQGLERRRKKGAGVYMSGCIPTAKNQALFEEHPTKR
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mRNA from alignment at CM002465.1:136010..137268-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5106 ID=rna5106|Name=rna5106|organism=Nannochloropsis gaditana|type=mRNA|length=1259bp|location=Sequence derived from alignment at CM002465.1:136010..137268- (Nannochloropsis gaditana)
TCGACGGGCTCTGCAGCGACCGACGGATCCTGCCCAACGTCGATGGCTTT
GCCGGTGAGAAGGGCCGGGACGAAGGAACAGGGTGGGAAGTGCCTGGATC
ACAGACGTTGACAGGGGGATCGTATTGGTATTCTATACGTTCTCTCGAGG
CGACTGATCCACCGCCCTCCCCCCCTTCCTCTCCCGCCCCCCCCCCCCCC
CCGTACCCTCCTTCCCCAGAATACAAGGCTCCCAAGGACGGGCTGGACGT
GATGATATGGGCCGGCTTTGCGGCCAAACACGGGGCGGTCACCGTGACGC
AGGGTTTCCTTCTCAAAGGTAAGCAGGAGAGCGGGGGGGAAGGAAAGGGG
AGGGAAAGTGTGGGGTGTTAAGACTGGGGGGCAGCGAAGGAATGATGGAT
TTGGATGGTGTCATGGATGGTGGGAGGCCTCTGTGGGGCTCAAGATCTCT
GGCCGTCCTTTCTCTCTCCCTGGCTTTACCGACTCAACCTGCCCGCCTGT
CCTCCCTCCCTCTCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCGC
AGGTGCCAAGGGCACGCGCGCTTTTCCCCCGGGAGTGGTTCCTCCCCCAC
CCTCTGCCTCCACCACCAACGTGGCCAAGAAAGGAGGCGCTGCTGGGAAG
ACCGGCACAGATCCTGCCAAGGAGGAAAACGAGGGGCGGCTCCGGGGGGG
AATGTAGTCGTATGGGGGCAGGGATTAGAGAGAAGAAGGAAGAAGGGGGC
GGGAGTGTACATGTCAGGCTGTATACCGACGGCGAAGAATCAAGCACTGT
TCGAAGAACATCCAACAAAGAGGTGACTCGCGATCAAAGTATAAGAAAAG
CTTGAGGGTAGCACGGAATGGGTTGATGAATTGGGAGGGTCTACGAGGCA
GGTTACACAAAAAAAGAGACGGGACACAATGGAGAAATCCGAAAAGAATA
TTAGGTAATGTGCATGGTAAAAAAGAATAGATGCATCGTGGAACGAAGGA
TTCGACGGCTGCTACCGAGGATCAAGGCCGTTTGAAACGGATAGCACGGA
TGGTTCAGACCAGCACTGTATGATTTCATCATGATCGGTCAGATCGAAAA
AAGACTGCAACAAACAAGATAGATGTTATCACTTTCGTTCTTTGTGCGCC
TCAAGTGTCATCTGCAATCTTCTGCCTTAGGTGATAGCTCAAGGCGGTAC
TGCGATGACGACAAATATCTGCAGCAGTTACCCCTTGCTTAACTTGATTA
GCAATGCTG
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Coding sequence (CDS) from alignment at CM002465.1:136010..137268-

>rna5106 ID=rna5106|Name=rna5106|organism=Nannochloropsis gaditana|type=CDS|length=435bp|location=Sequence derived from alignment at CM002465.1:136010..137268- (Nannochloropsis gaditana)
ATGATGGATTTGGATGGTGTCATGGATGGTGGGAGGCCTCTGTGGGGCTC
AAGATCTCTGGCCGTCCTTTCTCTCTCCCTGGCTTTACCGACTCAACCTG
CCCGCCTGTCCTCCCTCCCTCTCTCCCTTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCGCAGGTGCCAAGGGCACGCGCGCTTTTCCCCCGGGAGTGGTTC
CTCCCCCACCCTCTGCCTCCACCACCAACGTGGCCAAGAAAGGAGGCGCT
GCTGGGAAGACCGGCACAGATCCTGCCAAGGAGGAAAACGAGGGGCGGCT
CCGGGGGGGAATGTAGTCGTATGGGGGCAGGGATTAGAGAGAAGAAGGAA
GAAGGGGGCGGGAGTGTACATGTCAGGCTGTATACCGACGGCGAAGAATC
AAGCACTGTTCGAAGAACATCCAACAAAGAGGTGA
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Synonyms
Publications