rna5103, rna5103 (mRNA) Nannochloropsis gaditana

Overview
Namerna5103
Unique Namerna5103
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length492
Alignment locationCM002465.1:122763..123230 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100492g1.10042.mrna
Orig protein idgnl|cribi|Naga_100492g1.10042
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:122763..123230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100492g1gene4926Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5103rna5103-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25582.1cds5091Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5103 ID=rna5103|Name=rna5103|organism=Nannochloropsis gaditana|type=mRNA|length=492bp
ATTGGCCTTTGTCCCTGTCAGATCGACCCGGACTTCGCGGACCGACCGGC
GCCTCCCCCGGGCGCCAAGAGCGAGGCTCCTTACTATGACTTCGACGCGC
GCGACGACTCCTACGAGGAGGACGAGGAGGAAGACCTGGAGGACATGGCG
GAACCTATTTGTGACTTTACCTACCAGGACAAGACTTTCACGGTGATGAA
GTTCGTACAACCCTATTTCGTGGTGGGCGAGCGGGAAGCAGGGAAGGAGG
GGGCGTGGGAGCTTCTGGTGGGCGATAAGGCGGAGCAGGTGTTTGATTGG
GTCCTGGAGAGCGGTGAGTGCGGCAATCCCCCTCGTTTCCTTTCCTTCCC
CGTGGTGTCCACGACGACGTTTCCCTCTGGGTTCCTTTTCTCTTCTTTCC
CTCTCTTTTTCTGATTTTTCCTCCTCCCAGCCCCCTTCCGTCGACCTTCT
GTATAGAGGCCGCGTCCCTTCCATCTCGGGAGGGTCACTCCC
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protein sequence of rna5103

>rna5103-protein ID=rna5103-protein|Name=rna5103|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MTTNRYIEGSGRRGNEEERHQRRARQARETSRQSLSSRRRANMWTLVRKK
CASKYPSVQASSCDELDQLQHPFPTPSFSISTPPRLTP
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mRNA from alignment at CM002465.1:122763..123230+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5103 ID=rna5103|Name=rna5103|organism=Nannochloropsis gaditana|type=mRNA|length=468bp|location=Sequence derived from alignment at CM002465.1:122763..123230+ (Nannochloropsis gaditana)
ATGACAACCAATAGATACATAGAGGGGAGCGGTCGGAGgggcaacgagga
ggaaagacatcAGCGGAGGGCCCGGCAGGCGAGAGAAACGTCGtgagggc
agaggaggcaaaggggaaagggtagGGGAAAGCGCGCCGGTGGGAAGGAT
GAAAGACATCAAGAAACAAATTGGTTGTTACCTGTTTTTCCTAAATTTGA
GGTTGGATTTGTAATCCTCGACTTTGGTGAAAGTGTCAAGTAGGCGTAAG
GTGGCACCCTAATTgcccatttttttccccgcaATGAGAGCAGCCGTCAA
TCCTTGTCGTCAAGAAGACGCGCCAACATGTGGACCCTCGTTAGGAAGAA
ATGTGCGTCAAAATACCCGTCTGTTCAGGCATCCTCATGCGACGAACTCG
ACCAATTGCAGCATCCTttccccacgccttcctttTCTATTTCTACCCCC
CCCCGACTTACTCCCTAG
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Coding sequence (CDS) from alignment at CM002465.1:122763..123230+

>rna5103 ID=rna5103|Name=rna5103|organism=Nannochloropsis gaditana|type=CDS|length=534bp|location=Sequence derived from alignment at CM002465.1:122763..123230+ (Nannochloropsis gaditana)
ATGACAACCAATAGATACATAGAGGGGAGCGGTCGGAGgggcaacgagga
ggaaagacatcAGCGGAGGGCCCGGCAGGCGAGAGAAACGTCCCGTCAAT
CCTTGTCGTCAAGAAGACGCGCCAACATGTGGACCCTCGTTAGGAAGAAA
TGTGCGTCAAAATACCCGTCTGTTCAGGCATCCTCATGCGACGAACTCGA
CCAATTGCAGCATCCTttccccacgccttcctttTCTATTTCTACCCCCC
CCCGACTTACTCCCTAGATGACAACCAATAGATACATAGAGGGGAGCGGT
CGGAGgggcaacgaggaggaaagacatcAGCGGAGGGCCCGGCAGGCGAG
AGAAACGTCCCGTCAATCCTTGTCGTCAAGAAGACGCGCCAACATGTGGA
CCCTCGTTAGGAAGAAATGTGCGTCAAAATACCCGTCTGTTCAGGCATCC
TCATGCGACGAACTCGACCAATTGCAGCATCCTttccccacgccttcctt
tTCTATTTCTACCCCCCCCCGACTTACTCCCTAG
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Synonyms
Publications