rna5099, rna5099 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5099
Unique Name	rna5099
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1989
Alignment location	CM002465.1:117740..119999 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100377g3.7561.mrna
Orig protein id	gnl\|cribi\|Naga_100377g3.7561
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:117740..119999 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100377g3	gene4923	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5099	rna5099-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25588.1	cds5087	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:117740..119999+
coding sequence from alignment at CM002465.1:117740..119999+

mRNA sequence

>rna5099 ID=rna5099|Name=rna5099|organism=Nannochloropsis gaditana|type=mRNA|length=1989bp
GTAGTCGTTTTTTGTACAACGGCGCACATGTTTGTAAGGAATCTTGCCAA
TAATCCGATTATGGATCCCAAACATGAATTAAAATGAGGATCTGATGTGA
GATCCGGATACGGATACTACATAATAAAAAACTTGTAGCTCGTATGTTAG
ATTGAATTGTTCATCGTGACGAAGGATGCAAAGAGCTGAAGCTTATCCGA
AACAAGAAAACATAAATAATGGGAAGCAAATGAAAATCCTACACAACGAA
CATGCACACAGCTCTGCAGCGCCCCTGACGAGATGTTGAACGTCCTTGCT
CCGAGCGAATCCCCCTTGAATACCCGCTCAGATGTTGAACATCCCTGTTC
CCACTAAATTCCCCGCAAGCACCGGAGGAAGCTGTTCCGCTGCATCACGC
GGTACCAAAACATGTTGCCAGAATCTTTGAAATCTTTTCGAGGAGTAACC
AATTTGATAGTTGAAGAGTAGTTTAGACCGTTTATTGTGTTTTTGGGACA
CATTTCGCACTGATAGTCACATTAAACATGTACATCAAGGTTATCTAGTT
ATGGCTGGAAATATCCAAACTTGACAATTTCCGCAGGGAATCCCCCAATA
TTTTTTGGGCTCGGTATAGCTCGTTAGAAAAGCCTCAATCCGAAATCCCT
ATACGTAACTGGAGTAAATCAGAAACAGCATTTGGTGACATATGAAAACG
GGTTTCCAAGGAGTTTCCAAGGGGCGTTTCGCTTGCAATTGCTCTGGATT
TTGTGCTTTTTCATGTGCTTAGCGTTCTACGTCGGGGTAAACATTGATAA
GACAGCTTCCGTATAGCACCGGCGGCACGAGAAATCGATTTCTCCATGAC
TGTTTCTTCACTTTCACACGGCGGGGATAGCGTATCTGGATCATTTCGTG
TACTTCAATCGGGCGAGAAATGTCATTTTTTGTAAATGACAAGTGCCACG
AGGTCCTACTCGCATACTCCATGCTCTATGAGACCTTATCCTCACGCATG
ATATATTCACAACTACGACGTGTGAAGACAGCCTACCTTTAAAAACAGTA
AAAACAGGTCCAAATCGATTAAACATGCAGAGCATCGCCCGCTTGCTGTT
CTTTGTTGCCTGTGTTATGACATTACTCACGACAAGCGCGGCCGGCTCCG
CCCACGGACACCGCGAGCTGCGTGGTGGTTTTGCTGGCAATGTCCGTCGC
AACAATCGCGCCGCCCGGGCGGAGATGCGGAGCGATGCCGGAGGGCGTCG
CTTGGAGAATGTGGAGGTCATGACGACGGGGGTCGTCCACCCCCATCGAG
TCTTGCGTGGTGGATTTGCCGGAAACGTCCGTCGCAACAATCGCGCCGCC
CGGGCTGCGATGCGGAGCGATGCCGGAGGACGTCGCCTGTGAGCGTCCTT
ATGAGTCGGTGAAGGGGAAAAAAAGACTGCGGGAATCCCAAGGTTCAAAC
TTTATCCACCCCAATGCCACTCAGGATGTGCTTAAGAAGATATATATGAT
GCATGATTCTATACTACGGAAAAGCTTTTTTGACCGACAGGTGTCGAGAC
GACACGTATTGCCTTTACAAAAATTATGACGTGCACAAATTTGGACTCGA
AACCTATGATTGGCTTTTCACTTGTGCAGAGAGGTGCTCTTGAAGAGGCG
TGTGTGGAATTTGTAGTGTGCGGCGTAGAGCTCCACGTGAATACTACTAA
ACATAGCACAGAAGAAGAAAATCTCGACGATGTGAACATCTTCAATCACC
AGACCGTATGTTGGAGACTGCCTTGCTATTTTTGATTCCTTGGGCACCCT
TCACAACTCCTGATTACCGACTGACATAGCTCTCGGCAAGGGGGGGGGGA
GGAGAAAGGAGTAGGTAAAAATCATTTTCTGTGGGTGAGTGTGAGTTGTC
TGCATGCGCGGTGTGCTGCTTGTTTCATCGTTACCGACTTGTCCAAATCT
CAACCCAAAAAAAAGGAGAAGAAACAAATAAACTTTTCT

protein sequence of rna5099

>rna5099-protein ID=rna5099-protein|Name=rna5099|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MWNGTRGTVGISRILRRTTFSMKSILFPRLYPIPSAHPPQTELDASLDAL
AEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAV
TEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAGGQ
FCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDA
KCPGARAALESKCATA

mRNA from alignment at CM002465.1:117740..119999+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5099 ID=rna5099|Name=rna5099|organism=Nannochloropsis gaditana|type=mRNA|length=2260bp|location=Sequence derived from alignment at CM002465.1:117740..119999+ (Nannochloropsis gaditana)
ATACCGAGCCCAAAAAATATTGGGGGATTCCCTGCGGAAATTGTCAAGTT
TGGATATTTCCAGCCATAACTAGATAACCTTGATGTACATGTTTAATGTG
ACTATCAGTGCGAAATGTGTCCCAAAAACACAATAAACGGTCTAAACTAC
TCTTCAACTATCAAATTGGTTACTCCTCGAAAAGATTTCAAAGATTCTGG
CAACATGTTTTGGTACCGCGTGATGCAGCGGAACAGCTTCCTCCGGTGCT
TGCGGGGAATTTAGTGGGAACAGGGATGTTCAACATCTGAGCGGGTATTC
AAGGGGGATTCGCTCGGAGCAAGGACGTTCAACATCTCGTCAGGGGCGCT
GCAGAGCTGTGTGCATGTTCGTTGTGTAGGATTTTCATTTGCTTCCCATT
ATTTATGTTTTCTTGTTTCGGATAAGCTTCAGCTCTTTGCATCCTTCGTC
ACGATGAACAATTCAATCTAACATACGAGCTACAAGTTTTTTATTATGTA
GTATCCGTATCCGGATCTCACATCAGATCCTCATTTTAATTCATGTTTGG
GATCCATAATCGGATTATTGGCAAGATTCCTTACAAACATGTGCGCCGTT
GTACAAAAAACGACTACCAAAATTGAAAGCCCAATCACACACTCATTTAT
GTTTGTACCACATCTAATCACGCAAAGCAAACCTTTCAAAAAAACCTCTT
CAACTATGCTCTTCAACAAGTCCTACATGGCCTCCATGAGCCTCCTTATG
TTTGCCGCCGGGGCTGCTGCCACCGAGACGCTTACCCTTCGGGGCTTACA
AGCCGCTGCCACTCCCATGGTGGCGCGCTCGTGCAATGCGGTGAGTGTAA
AATAAATGTTCAAAAGAGTCTTTGATTTCTCTTTTCAAAATGTGGAATGG
TACAAGAGGAACAGTCGGTATCAGTCGGATCCTTCGTCGCACAACTTTCT
CAATGAAAagcatcctctttcctcgtctATACCCTATCCCTTCCGCTCAC
CCGCCGCAGACTGAGTTGGACGCCAGCCTCGACGCACTGGCAGAGGACGC
CAAATGTGGGGCGGTATGGACTACGTTTTCGGACACCATCAGCACCGCTG
AGTTCAACCTGATGCCCCTGGCGGGCCAGGTCAAGGTAGGGACGTGGAAA
GCCGAGAACTTGTGAGAGGAAATTGGAAACTCTGTGACAGGAAATGACGA
GCTGCTATGCTTTCCCAATCTAGGATCGCCTCAGAATATTCTTGACGTGG
CTGGTATTTTCCCACCCTGAATCCACACCTCTGACCTTCACTGtgctccc
cttttccttatCCTCCAGGCGTTGGAAGCCTTCTGCGCGACCCCCTGTGG
GCCCAGCTTCGACAAGGCCGTGACCGAATGGCGCAATTGGTGCGACAGCA
AAAAGGCGACCTTCACTCCCATGGACGACGttgacgaggatgaggacgag
gacgaggacatgcCGGTCACCTTTGATGGCTTTGTAGCCGAGTTTGGGTG
CTCCAAATCCGCTGGCGGTCAATTCTGTGCCCAGTTGGTCATGGCGGAGA
TCGCGGCCAAGCCCGACGACTTGGAGACGAAATGCGATTACTACAGCAGC
TGCTGTTTTGGCGAGTTGAACCGCATCGTCAAGGTCACGGACCTCGAGAG
CCGAGCCTCTGCATTGGATGCCAAATGCCCGGGAGCACGCGCCGCGCTCG
AGAGCAAGTGCGCGACGGCCTAAGCAAACAGTGGCAACAGGGTGCGATAA
GGGAAATGTTGACACCATCAAGATGTCAACCAGACAATATCCCTCGCACG
CGGCCTCTTACTATGCTGCTCTATGGGTTTACAGAACTGATTTATATATT
TTCTATTTATATCTATATTGCAAGCTACGAAGACGTGATGTTTTCGTGGG
CTCTCGCGTCCATTTTTCCCCATTAAGTCAGCCTTATATGTAGAAAGTAA
GACAAGGAGACATCCTGGGGAGGAGCGGTGTGCGATAAAATTCTTGTGTG
AAACAATTGAAGCgcctgcacgaggaggaaagaaagttgTTTATTATTTA
TACGTAGCCATATTTGGGATTGAATGTGGAGTTGTGAAGGAAATAACCCA
AAATTATTGTTCTTAGCTCACTGTAAGcattgttttcttttcaccTATCA
TGTTGTACGGATGCCAACATAAATGGCTTGGCAGGAGGGATGGTCACAGA
GGCCTGGGTGAGTACATTACATGTTAGGATCAAATACGGGAAGGGAATGA
AGATATCTGG

Coding sequence (CDS) from alignment at CM002465.1:117740..119999+

>rna5099 ID=rna5099|Name=rna5099|organism=Nannochloropsis gaditana|type=CDS|length=1302bp|location=Sequence derived from alignment at CM002465.1:117740..119999+ (Nannochloropsis gaditana)
ATGTGGAATGGTACAAGAGGAACAGTCGGTATCAGTCGGATCCTTCGTCG
CACAACTTTCTCAATGAAAagcatcctctttcctcgtctATACCCTATCC
CTTCCGCTCACCCGCCGCAGACTGAGTTGGACGCCAGCCTCGACGCACTG
GCAGAGGACGCCAAATGTGGGGCGGTATGGACTACGTTTTCGGACACCAT
CAGCACCGCTGAGTTCAACCTGATGCCCCTGGCGGGCCAGGTCAAGGCGT
TGGAAGCCTTCTGCGCGACCCCCTGTGGGCCCAGCTTCGACAAGGCCGTG
ACCGAATGGCGCAATTGGTGCGACAGCAAAAAGGCGACCTTCACTCCCAT
GGACGACGttgacgaggatgaggacgaggacgaggacatgcCGGTCACCT
TTGATGGCTTTGTAGCCGAGTTTGGGTGCTCCAAATCCGCTGGCGGTCAA
TTCTGTGCCCAGTTGGTCATGGCGGAGATCGCGGCCAAGCCCGACGACTT
GGAGACGAAATGCGATTACTACAGCAGCTGCTGTTTTGGCGAGTTGAACC
GCATCGTCAAGGTCACGGACCTCGAGAGCCGAGCCTCTGCATTGGATGCC
AAATGCCCGGGAGCACGCGCCGCGCTCGAGAGCAAGTGCGCGACGGCCTA
AATGTGGAATGGTACAAGAGGAACAGTCGGTATCAGTCGGATCCTTCGTC
GCACAACTTTCTCAATGAAAagcatcctctttcctcgtctATACCCTATC
CCTTCCGCTCACCCGCCGCAGACTGAGTTGGACGCCAGCCTCGACGCACT
GGCAGAGGACGCCAAATGTGGGGCGGTATGGACTACGTTTTCGGACACCA
TCAGCACCGCTGAGTTCAACCTGATGCCCCTGGCGGGCCAGGTCAAGGCG
TTGGAAGCCTTCTGCGCGACCCCCTGTGGGCCCAGCTTCGACAAGGCCGT
GACCGAATGGCGCAATTGGTGCGACAGCAAAAAGGCGACCTTCACTCCCA
TGGACGACGttgacgaggatgaggacgaggacgaggacatgcCGGTCACC
TTTGATGGCTTTGTAGCCGAGTTTGGGTGCTCCAAATCCGCTGGCGGTCA
ATTCTGTGCCCAGTTGGTCATGGCGGAGATCGCGGCCAAGCCCGACGACT
TGGAGACGAAATGCGATTACTACAGCAGCTGCTGTTTTGGCGAGTTGAAC
CGCATCGTCAAGGTCACGGACCTCGAGAGCCGAGCCTCTGCATTGGATGC
CAAATGCCCGGGAGCACGCGCCGCGCTCGAGAGCAAGTGCGCGACGGCCT
AA

Synonyms

Publications